LOC120574429 (LOC105009787)


Basic Information

Item Value
gene id LOC120574429
gene name LOC105009787
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14998773 ~ 15000144 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_852
TATGATTTTCATCTACACTAATAATACATTGAATCAATTTAAGACATTTGCCTTTACAGAAGACAAAACTAATTAAATGAGAGACACCATGCAGATTAAAGCAAAGCTCCTCCTCCTGTCAGTCCCTCTCAGTTTCAGTGTTGTATTAAGTTGCTCCTCCAGCACCACCTCTCCTCATCCTCCAACCCCTCTCATCTGTCAGCAGTAAGCTCACTTTCCAAGTCACAAGGCCATTCTCAGCACACACTGCCAACATGCTGGGGACCCTCTGCACTCTCATCACTGCTCTAACATGTGTGAGTGGTGTGACCGTGGTGACACAGAAGCCTCCTGTTGTCACGGTGAGGAAAGGAGAGACAGCCACCATGGACTGTAACCTGGGGACTGTTACTACCCATGTTGCTTACTGGTATAAACAGATTCCAGGAGGAGTTCCTCAGTTTATGTTGTATTTTCATCACGCCGATAGCTCTCAACCTATGGCTCTAGTTTCTCCTCTCCAAAGTTCACATCTAATCATCAGTCAACATCAGATTATCGTCCagttattaaagtgatgacgtttggtatcatttcgggcatgtAA

Function

NR:

description
PREDICTED: Ig heavy chain V region S43 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_852 True 586 V_gene_segment 0.44 3 14998773 15000144

Neighbor

gene id symbol gene type direction distance location
LOC120573908 tspan10 coding downstream 23374 14973352 ~ 14975399 (-)
ccdc137 ccdc137 coding downstream 29296 14964295 ~ 14969477 (-)
btbd17b LOC103373589,LOC104944234 coding downstream 44500 14950264 ~ 14954273 (-)
LOC120575070 map2k6,LOC103373127,LOC100697168,LOC103392800,LOC102787166 coding downstream 48696 14936968 ~ 14950077 (-)
LOC120575176 NA coding downstream 124141 14869942 ~ 14874632 (-)
baiap2a baiap2,LOC103361233,LOC100696811 coding upstream 44815 15044959 ~ 15100591 (-)
LOC120574279 LOC103361235,LOC100701199,LOC102782133,LOC102300456 coding upstream 101837 15101981 ~ 15106625 (-)
hs3st3b1a LOC104940293,LOC103361242,LOC104959450,LOC101483888,LOC100697618 coding upstream 334218 15334362 ~ 15346560 (-)
LOC120574947 rnf222 coding upstream 391594 15391738 ~ 15393203 (-)
LOC120574866 acsf2,LOC102294907 coding upstream 404776 15404920 ~ 15415610 (-)
G155047 NA non-coding downstream 13409 14985134 ~ 14985364 (-)
G155039 NA non-coding downstream 34927 14963233 ~ 14963846 (-)
G155025 NA non-coding downstream 103149 14895379 ~ 14895624 (-)
G154948 LOC104962285,LOC104925065 non-coding downstream 334102 14627750 ~ 14664671 (-)
G155106 NA non-coding upstream 156285 15156429 ~ 15162435 (-)
G155126 NA non-coding upstream 311936 15312080 ~ 15313592 (-)
G155151 NA non-coding upstream 368085 15368229 ~ 15404569 (-)
G155232 LOC104918633,LOC103356299,LOC102214648,LOC102291995,LOC101464722,LOC100701808 non-coding upstream 526805 15526949 ~ 15527605 (-)
G155234 LOC106925874,LOC103468796,LOC106529779,LOC106946608 non-coding upstream 541413 15541557 ~ 15544017 (-)
ush1ga LOC104944226,LOC103373181,LOC103392806,LOC106949104,LOC104925058,LOC103140944 other downstream 109291 14879627 ~ 14889482 (-)
LOC120575102 fam104b,LOC103373210,LOC101470236,LOC107083185,LOC102083140 other downstream 141193 14851939 ~ 14857580 (-)
LOC120574214 bahcc1,LOC106528540,LOC108241329,LOC107083174 other downstream 170534 14795646 ~ 14828239 (-)
LOC120574213 NA other downstream 207995 14765734 ~ 14790778 (-)
LOC120574989 LOC108241285,LOC103373333,LOC106518659 other downstream 454779 14533682 ~ 14543994 (-)
LOC120573849 LOC106675063,LOC102783976,LOC102313472,LOC102290019,LOC102295680 other upstream 2869 15003013 ~ 15008712 (-)
LOC120573850 LOC106674513,LOC106098575 other upstream 9654 15009798 ~ 15010340 (-)
LOC120574278 LOC104940298,LOC103361237,LOC102197797,LOC102781856,LOC104946382 other upstream 106613 15106757 ~ 15139853 (-)
metrnla metrnl,LOC102778978 other upstream 442980 15443124 ~ 15449517 (-)
tecra LOC103367165,LOC101076261,LOC106932487,LOC104960308,LOC108241336,LOC106529633,LOC103151989 other upstream 717703 15717847 ~ 15724422 (-)

Expression


Co-expression Network