LOC120544212 (LOC101481373,LOC102305685,LOC102212117)


Basic Information

Item Value
gene id LOC120544212
gene name LOC101481373,LOC102305685,LOC102212117
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 101803 ~ 156815 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU219544
GTACCTGCAGTCAGtaccacacactacacactacacactacacactacactacacaccacACCACTGGTCCCGCTGCAGCTGGACCGAGCTGCACAAGTACCTGCATAAATACGACTGTCTCCGTGACGACCCGTTCCAACACGATTGGCCGGCTCAGCCTCCGTTGCCGGGGTTTCACTACTCCATGGACCAACAGTGTCGCTTCGACTTCGGACCAGGATACAGCCTCTGTACTGCaTACGCGAGCATCGAGCCCTGCAGGCAGCTGTGGTGCAGCGAGTACAGCAACCCGTTCTACTGTAAGACCAAGAAAGGCCCGCCGCTGGACGGGACCAAGTGTGGACCGGGGAAGCACTGCTTTAAAGGTCTCTGCATGAAGCTGACCCCCAACCTGCTGAGACAGGACGGCGGCTGGGGGGCGTGGAGCGCGTGGGGCGCCTGCTCCCGGACCTGCGGGGGCGGAGTCCAGTTCCGGTCCCGGCGCTGCGACAGCCCAGCTCCAGCCAACGGGGGGCGCACCTGCTTCGGAAACAGCTACGAGTTCACGCTGTGCAGCCGGGACGAGTGTCCCCCGCTCACTGACTTCAGAGAGGATCAGTGTAAAGTCTGGAATCCATTTTTCGAACATGAAGGAAAAAAACATCACTGGCTGCCGTACCAACACCCTGACC
>TU219564
ACTCAGCAGCTCTCCGTCCAGcagtctgtctctcagtctgtctctcagtccagcagtctgtctctcagtctgtctctcagtcCAGCAGTCTGTCTCTCAATCTGTCTCTCCGTCCAGCAGtctgtctctccgtctgtctctccgtctgtctctccGTCCAGcagtctgtctctcagtctgtctctcagtctgtccctcagtctgtctctccgtctgtctctccgtctctgtctgtctctctcagaaTGGACCAGGTTCATTATGGATTATTGATTCTTGTGTTTCTGCTGCAGATGGACTGTTTACCCTCCGTTTACATCACTGACAACTCAGATTCTCTCCATCAGGTTCTGTCAGAGTTCGCTGTCGTTCGTCCAATCAGA
>XM_039777828.1
ctcagtctgtctctcagtctgtccctcagtctgtctctccgtctgtctctccgtctctgtctgtctctctcagaaTGGACCAGGTTCATTATGGATTATTGATTCTTGTGTTTCTGCTGCAGATGGACTGTTTACCCTCCGTTTACATCACTGACAACTCAGATTCTCTCCATCAGGTTCTGTCAGAGTTCGCTGTCGTTCGTCCAATCAGACCCCCCCCACCGGGGGCGGCGTTCCCGCCCTTCCCGCCcgcgagaaaaaaaaagccccccccccccccggcgcCCCCGGAGGGCCCCCCCCCGGAGGCCCCGCCACTGTCGGtcctccctccttttttttgAGTGGGGGCCTGCGTGTTCTACAATCGACGGTGCTTACGGCGGCTGCAGCTGATTCTGCGTCCCAACGCGCGCCTCGTGGCCCCCGCTGCCTCCGTGGAGTGGTGGGAGGAGTCAGGGCGCAAACGCtcgcagccaatcacagacaccGGCTGCTTCTACAGCGGAGAGGTGGCCGACATGGAGGACACGGCTGTCGCCGTTAGCAACTGTGATGGGCTGGCCGGGATGATCCGGACGGGTCAGGAGGAGTTCTTCATCGAGCCGTTGGATCGCCGGAGGacaggaagagaagaagaagaggaagaagaggaagaagaagaagaaggaggaagaCAGCACATCGTTTATCGCTCCTCAGCCATCATTAACAAACACTCGGCCAATCAAACAGCAGCTGACTTCCTGCTAGGTCCTCTGTTAGGGTCTCTGAACTTGACCCAGAAGGTGTCGGGGTCCAGATCCAGACCAGCTCGGCGCCGGCGCTATGCTGAAGAGGCTGAACTGTTAAACATCGAGGTCCTGTTAGCCGTGGACTACTCTGTTCTTCTCTTCCACGGACGAGACCACATTCAGAAATACCTTCTGACATTCATGAACATAGTTAACGAGATCTATCAGCATCATTCTCTGGGAGCCAACATCAACGTTGTTCTCGTCAAAATCATCATGTTGTCTCCATCCAAGTCCCAGGAGCTGATCTCTGTGGGGAACGCCCAGAAGAGTTTGGAGAACGTCTGTGGATGGTCGTACCTGCAGCAGAGAGACCAGAGCCACGCCCAGCAGCACGACCACGCCATCTACCTCACCAGGCAGGAGTTCGGGCCCTCGGGCATGCAGGgttaTGCTCCAGTTACAGGAATGTGTCACTTGCATCGGAGCTGCGTCCTGGTCTTTGAAGACGGGTTTTCCTCGGCCTTCGTAGCGGCTCATGAAACAGGACACGtCTGGACCGAGCTGCACAAGTACCTGCATAAATACGACTGTCTCCGTGACGACCCGTTCCAACACGATTGGCCGGCTCAGCCTCCGTTGCCGGGGTTTCACTACTCCATGGACCAACAGTGTCGCTTCGACTTCGGACCAGGATACAGCCTCTGTACTGCaTACGCGAGCATCGAGCCCTGCAGGCAGCTGTGGTGCAGCGAGTACAGCAACCCGTTCTACTGTAAGACCAAGAAAGGCCCGCCGCTGGACGGGACCAAGTGTGGACCGGGGAAGCACTGCTTTAAAGGTCTCTGCATGAAGCTGACCCCCAACCTGCTGAGACAGGACGGCGGCTGGGGGGCGTGGAGCGCGTGGGGCGCCTGCTCCCGGACCTGCGGGGGCGGAGTCCAGTTCCGGTCCCGGCGCTGCGACAGCCCAGCTCCAGCCAACGGGGGGCGCACCTGCTTCGGAAACAGCTACGAGTTCACGCTGTGCAGCCGGGACGAGTGTCCCCCGCTCACTGACTTCAGAGAGGATCAGTGTAAAGTCTGGAATCCATTTTTCGAACATGAAGGAAAAAAACATCACTGGCTGCCGTACCAACACCCTGACCTCTCCCCCCAGTCCAAGGAGACAGGCGCCGTGGTGTCCATGGACAGAATGGTGCATGATGGGACACCGTGTTCCTACGGAGACGCCCACAGCGTCTGTGTGCGGGGAGACTGTGAGCATGTAGGCTGTGACGGCCAGATAGCGTCCGACCAGCAGGAGGACAGATGTGGAGTGTGTGGAGGAGATAACTCCAACTGTAAGATCGTTAAAGGAAACTTCACCCGCAGCACCAAGAAACAAGGTTACCTAAAGATCCTGGAGATCCCCAAAGGAGCGCGACACCTTCTGGTCCAGGAGTTCAGAGAGACACCTCACATCCTGGCGATGACCAACCTGGAGACGGGTCACGTCTTCCTCAACGATGAACACGAGCTCCCAGAATCCCGTGTGGTGATCGAGAAAGGCGTGGCGTGGGAGTACAGCAACAGCGAGGAGGCGGAGTCTATCCAGACCACCGGGCCGCTGCAGTACGGAGTCCTGCTCATGGTCCGTTCCCATGGCGACTCCAAGGTGACGGTGTCCTATAAGTACGTGATCCAGGACGGTCTGCGGTCGTCACTGGAGTCCAACCTGCTGCAGGAGGACGCCGTCTTCTACGAGTGGGCGCTAAAGAAGTGGTCGGTCTGCTCCAAGCCCTGCGGAGGAGGGAAACAGTACACGAGGTTCGGCTGCAGGAGGAAGGCCGACGGGAAGATGGTCCCGAGGACGTTCTGCTCCAACATCAACAAGCCCAGAGCCATCAGCCGCAGCTGCAACACGGACGCCTGCAGCTCACCACGCTGGGTGAGCGGGCCGTGGGAGGACTGCAGCGCCTCCTGTGGTCAGACGGGGTGGCAGCGCCGCTGGGTCAGCTGCCAGCAGGCGTCTGCCGACGGACAGTCCAGCACGGGACAGTCCAGCACGGGACAGTCCAGCACGGACCAGCAGGCATCCAGCGCGGACCAGCAGGCTTCCAGCGCGGGACAGGGACAGCAGGCATCCGGCGCGGGACAGCAGACACGCTCAGTGAACAGcaaactgtgtggaggagagcGACCGGAAGGGAAACGAACCTGCAACCGTTTCCTCTGCCCCGCTGCCTGGCGGGCCGGACCCTGGACACCGTGTTCGGTGTCCTGTGGGAACGGGACCCAGGAGCGCCAGGTTGCGTGTTTGAGTCCCGACGGTTCAGCACGAAACTGCAGCGACCCTCGACCAATCACAACCCGCGCCTGCCAGCCCCCTCCCTGCAGCGgtgaCCAGAGGAACTCCATCATCCAGTGGTTGTCTCGTTCTAACTCTGACTTCACTCCCAACATCTCCTCCAGGCAGCGTTGCCGCGGTGACCGCTCTGTGTTTTGCCGGATGGAGGTGTTGACTCGGTACTGCTCCATCGCCGGATACCGTCAGATGTGCTGCAAGTCCTGCAGCCATGGCAACTTCAGCAGCAGCATCCCGCCCAGCGCCAACAGCAGTTCCTGGAGTGTAACCATGGAGACGATGACTTCAGCATCCGCCATCATCGTCAGCACCCCACCCCCCAGCGTCACCATGACTCCGCCCCCCAGCATCACTGTAGCTCCGCCTCCCAGCGTCACCATGACTCCGCCCCCCAGCGTCACCGTGACTCCGCCCCCCAGTGTCACCGTGACTCCGCCCCCAACCAGCCAGAGCAGCACCGACTTTGTGTACGTGGAGTACGAGGATTATGGCGACATTTCATCCTACAAGGATCCTTCTGTCCCCTCTGACACTCCTCATATTGGCACTACTAGTACTACAAGTCATCTGAGAGAAACTGCTTCGAAAACTCCCCTTCCCACAATGCATCCTGCTACAGTTCCCGTGGTAACTGCTGAGGATCAGAGTCCCTGGACGTCTGCCGTCCCAGAGTTCCCCACAACGACCACTTCTACAACTACAAGACGTACAAGAAAAACTGCTCCGCCACATTTATTCAAGAAGAAAACTCCCACAATGCCGCGTGGGAAAACTACCGATCCCACAATGCATCCTGCTACAGTTCCCGTAGTAACCGCTGTAACATCTGCCATCCGAGAGTTCCCCACGACGACCGCTTCCACAACTACAAAACGTACGAGAAAAACTGCTCCGCCACATTTATTCAAGAGGAAAACTACAGCTCCCACAATGCACCCTGCTACAGTTCCAGTGGTAACTGCTGTGGCAGCAATCTTTAACGCCACTTCTTCCCCGAACACGCCACTAGAGGGGCGGGGCCTGTCAGGGGGGCGGAGCCTGGAGCCGGCGCTGTCTAAGCGGGAGAACAACTCCGTTGACGAGGTCCCGTATCGGATCGTGGGATTGGACGGCGGCGACGGGCGGGGACAGCAGAACTACTTTGTGCCGCGGCGCACCCCTCCGCTCCGCGAGCGAACGCAAAACAAACGCATCCAGCAGCTTCTGAACGAGAAGCGGCACCGAGAGGGCAGGACGCACGCCGCACGCACATGAACATACACAGGGCGCTCGCTCGTTAGGACGCATGTGCAGCTTGCTCGCTTCCTGCTAACGAGCTCTTAACGAGGAGCAGACTGCCAACGTTAACGAGCTCTTAACGAGGAGCAGACTGCAGAGCCGACAACACAAACCACcccaatagacctttttcacggtagacatgttgacatgtcatagtaggaacagcacaggtgtattaaaccattactgatggctgcattccacttaggagaggcc

Function

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219544 False 672 TUCP 0.60 6 124348 137387
TU219564 False 383 lncRNA 0.51 2 151459 156815
XM_039777828.1 True 4577 mRNA 0.59 26 101803 156644

Neighbor

gene id symbol gene type direction distance location
LOC120544147 NA coding upstream 28597 185412 ~ 194355 (-)
LOC120544162 NA coding upstream 155577 312392 ~ 319615 (-)
LOC120544159 NA coding upstream 205191 362006 ~ 366249 (-)
mat2b mat2b coding upstream 235252 392067 ~ 427766 (-)
slc23a1 NA coding upstream 281136 437951 ~ 462468 (-)
G162169 NA non-coding downstream 18974 81511 ~ 82829 (-)
G162168 NA non-coding downstream 64278 36462 ~ 37525 (-)
G162206 NA non-coding upstream 63321 220136 ~ 220441 (-)
G162218 NA non-coding upstream 91857 248672 ~ 249157 (-)
G162221 NA non-coding upstream 93397 250212 ~ 252990 (-)
G162185 NA non-coding upstream 105818 262633 ~ 264470 (-)
G162186 NA non-coding upstream 163431 320246 ~ 320818 (-)
ndufa2 ndufa2 other downstream 1096 94635 ~ 100707 (-)
G162166 NA other downstream 78366 21716 ~ 23437 (-)
pwwp2a pwwp2a,slc23a1,LOC102781148,LOC103395589 other upstream 314277 471092 ~ 502104 (-)
LOC120544218 LOC103373995,LOC103459907,LOC105918498 other upstream 386889 543704 ~ 558922 (-)
ttc1 ttc1 other upstream 413420 570235 ~ 578849 (-)
G162311 rps14,RPS14,LOC100194652 other upstream 629956 786771 ~ 794731 (-)
LOC120544221 NA other upstream 672280 829095 ~ 844858 (-)

Expression


Co-expression Network