G162269


Basic Information

Item Value
gene id G162269
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 534193 ~ 535481 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU219681
cctgatcacattcacacagttacacattcatacctggaagctgccaagtaccaccacagtctgatctgatcacattcatactggaagctgcccagtaccaccacagtctgacctgatcacattcatactggaagctgcccagtaccaccacagtctgatctgatcacattcatacctggaagctgcccagtaccaccacagtctgacctgatcacattcatactggaagctgcccagtaccaccacagtctgacctgatcacattcatacctggaagctgcccagtacaaccacagtctgacctgatcacattcataccttgaagctgcccagtaccaccacagtctgatctgctggcc
>TU219683
cctgatcacattcacacagttacacattcatacctggaagctgccaagtaccaccacagtctgatctgatcacattcatactggaagctgcccagtaccaccacagtctgacctgatcacattcatactggaagctgcccagtaccaccacagtctgacctgatcacattcatacctgtaagctgcccagtaccaccacagtctgacctgatcacattcatacctggaagctgcccagtacaaccacagtctgatctgatcacattcatacctggaagctgcccactaccaccacagtctgatcacATTcctactggaagctgcccagtaccaccacagtctgacctgatcacattcatacctggaagctgcccagtaccaccacagtctgatctgaccacattcatacctggaagctgcccagtaccaccacagtctgatctgatcacattcatactggaagctgcccagtaccaccacagtctgatctgatcacattcatacctggaagctgcccagtaccaccacagtctgacctgatcacattcatacctggaagctgcccagtacaaccacagtctgacctgatcacattcataccttgaagctgcccagtaccaccacagtctgatctgctggcc
>TU219685
cctgatcacattcacacagttacacattcatacctggaagctgccaagtaccaccacagtctgatctgatcacattcatactggaagctgcccagtaccaccacagtctgacctgatcacattcatactggaagctgcccagtaccaccacagtctgacctgatcacattcatacctgtaagctgcccagtaccaccacagtctgacctgatcacattcatacctggaagctgcccagtacaaccacagtctgatctgatcacattcatacctggaagctgcccactaccaccacagtctgatcacATTcctactggaagctgcccagtaccaccacagtctgacctgatcacattcatacctggaagctgcccagtaccaccacagtctgatctgaccacattcatactggaagctgcccagtaccaccacagtctgacctgatcacattcatacctggaagctgcccagtacaaccacagtctgacctgatcacattcataccttgaagctgcccagtaccaccacagtctgatctgctggcc

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219681 False 359 lncRNA 0.50 3 534193 535481
TU219683 True 641 lncRNA 0.50 4 534193 535481
TU219685 False 545 lncRNA 0.50 3 534193 535481

Neighbor

gene id symbol gene type direction distance location
slc23a1 NA coding downstream 71725 437951 ~ 462468 (-)
mat2b mat2b coding downstream 106427 392067 ~ 427766 (-)
LOC120544159 NA coding downstream 167944 362006 ~ 366249 (-)
LOC120544162 NA coding downstream 214578 312392 ~ 319615 (-)
LOC120544147 NA coding downstream 339838 185412 ~ 194355 (-)
pfdn1 pfdn1 coding upstream 24863 560344 ~ 568709 (-)
tmprss15 NA coding upstream 55553 591034 ~ 632939 (-)
LOC120544220 NA coding upstream 101173 636654 ~ 663746 (-)
LOC120544137 NA coding upstream 158784 694265 ~ 727005 (-)
LOC120544167 NA coding upstream 243087 778568 ~ 783234 (-)
G162265 NA non-coding downstream 53426 480473 ~ 480767 (-)
G162258 NA non-coding downstream 71309 462678 ~ 462884 (-)
G162252 NA non-coding downstream 136014 397823 ~ 398179 (-)
LOC120544187 NA non-coding downstream 155507 371982 ~ 378686 (-)
G162242 NA non-coding downstream 177667 356211 ~ 356526 (-)
G162261 NA non-coding upstream 16917 552398 ~ 592059 (-)
G162262 NA non-coding upstream 56287 591768 ~ 600857 (-)
G162293 NA non-coding upstream 141184 676665 ~ 683561 (-)
G162295 NA non-coding upstream 171978 707459 ~ 708067 (-)
G162278 NA non-coding upstream 220240 755721 ~ 826383 (-)
pwwp2a pwwp2a,slc23a1,LOC102781148,LOC103395589 other downstream 32089 471092 ~ 502104 (-)
LOC120544212 LOC101481373,LOC102305685,LOC102212117 other downstream 377378 101803 ~ 156815 (-)
ndufa2 ndufa2 other downstream 433486 94635 ~ 100707 (-)
G162166 NA other downstream 510756 21716 ~ 23437 (-)
LOC120544218 LOC103373995,LOC103459907,LOC105918498 other upstream 8223 543704 ~ 558922 (-)
ttc1 ttc1 other upstream 34754 570235 ~ 578849 (-)
G162311 rps14,RPS14,LOC100194652 other upstream 251290 786771 ~ 794731 (-)
LOC120544221 NA other upstream 293614 829095 ~ 844858 (-)
chm chm,LOC104936337,LOC106675663,LOC101479632,LOC108251494 other upstream 324451 859932 ~ 890410 (-)

Expression


Co-expression Network