G162338 (ik,LOC106511818)


Basic Information

Item Value
gene id G162338
gene name ik,LOC106511818
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 989158 ~ 1010085 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU219778
tcaacctccaacacctgcttttcgatgatgttcacgtcgcataattacgtcacttcataacgttcccatggcaacaggggaaaatggctgaacgtaaatgcggggattatgaaatcatgcaagcaccgcatattttgcgcggaaatcggcaatttatgcggcgaaagtgcgccatatttgaaaaaatgcgcccccACATGAATATgaagactttggctgattatgcgttgaattatgagatcacataatcacgtttttctggagggactgaatattGAAATCCAGATCATTTAAAACAATTacttgttgacttctggaaagatgttgcaattactgaacttaaaaaacagtgaaatatgttaaataaatcaacagtaaaaacacatacaactgtgaactTTACCtaaatacttttcctatttaaactttactttttcagtttactgtaaaaCGTAATGAGCTGAAAAATAGTTTCTCTCGATTATTCTGTGATCATCtcttttgtgatcattgggagccgaaatgataatcacgattacatttcgattaattgcacagtacagggttcatacgcattttaaccaatacttctccatgacttttcggcaaatttccatgactaagtgttcctgaaaatgtcagtcgacattctcCAATAAGAATACagatctgtgttaaagtttcccctcagaggtttaaatataaatgaatgataatgtctgtggttcatagATGGATTCTTCATATCTCTCCCTGAATACAACGCTGAGGTTAAGACCAGgtggaaatacatttattaatcacatattattatgctgtgttaaaaacaataccatgacttttccaaaactttctgggtctttttaagTTTCCagaacctttccaggcctggaatttgcattgtttaaattccataactttcccagtttttttcaaaacgtatatGAACCCTTACAGCCCTATTTTAATCCCAGCTCTAGTAATCGTAGTGAACTCACCGCGCTGATCTTCTTCCACTGGCGGTCCAGCTCTGCCTTCTCATTGGTCTCTTTGAAGCGGCGAGTCTTCCTGCCTTCGGACATCTTGATGCCGTACTGGAAGGCAGCCTTGGGCAGGGCCTCCTTGTTGTTCATGTAATCAGAGTACTCCTCCTGGGTATCAAAGTCCCAGCGGCCCAGAGGACCCTTCTTATTAccCTGGTCCATCTTACTGTAGTCCACCTCTTCATCACTGTCCACAGCCAGGTCGTCCAtcGTAGCAGGGTAACACTCAGCGTATGAGTTGGATCCTCCAAAGAAGTCTCCCAACTGTTCTTTACCGTCTCTCCTCTGAGAACCAGGTTCCTGGCCCGGCCATTGGCTGCCGACTGCTCCGGCAAACTTCTCGTTGATGATCTTGATCTGCTCTCTGACTGATGCTggacCTGTATCCACCTCCAGGacCTGGTGGTCATCTCCTCTGGGCTTCTCAAAGTAGCTGTGTCTTCTGTTCttgtcctcctctctctctctctccttctccttctctcgttctctctccctctctctctccctgtctcgctccctctctctctcccggtCTCTCTCTcggtgtctgtctttgtctttgggAGGTTTGGAGGACGAGCCGGCAGACGGGATGTAGTCCCCGATGTcctcaaaaaaactgagatcagccTCTGGAGCTCTCTTATCGTCCAGTTTacCTTTGTCCTTCTTCTTGATCTTCTTGTGTCGGGTTCCCTGTCGGAGATACGACAGGATCTGGGTCAGCTTCGAGATCACGATGTCGTTGGTGGTGAGAGTCGTCTgagcCTCCATGCTGGGACAGTCGGCCTTGCTGCGGATCAGAGTGGTGGGGATGTCGGTGTCGGTGAACTCATCGTCCAGGTCCACCACGTAGGCCATCCTGCCGGGCAGGAAGAGCTCGTTCCTCTCCACCACGCCGGTCCTGAACACCACGCGGTAGATGTTCCTGCCGAGACGAGTCTTAAACTCGATCTTCTCCTCTGGCTCCACGTCTTTCTTGGCCTCTTTCTGGACTTTCTCCAtcatgtcttcttcttctctctctttactggTGATTTCAGCTctcacCTTCTGCAGCAGAGCGAAGTCCAGACCTTTCACCAAGTGAGTGTGCTCCATGTCACCTCCCAAAAACTTAGACTCCTGGATCAGCTGACGAcgcttctctgctgcagactTATCTGCCTCAGCAGTGGGTCCTACAGCCCTGTAGTTAGCGGTGGTGCTGATGAGCTCTGTCTCTTCGTAGTCCTTGTTGACTccgtctcttctctctctggctcGGTCTCGGTACTTCTCCgccagctctctctctcgctccatCTCCTGCTGACGTAGCTTAGCATAGTAGctcttcttcttccttcgcCTCGCTGCAGGATCCTCATCCTCGTTGTAGTCCTTGGGCATTTCATGGTGTCTGGACTTGGAGGGGGGGGCCGAGGATGGCGTTGCCCTCGGCGTCATCAGCAGCTTCCTGAAGTCATCGTTGGTCAGTTTGGACTGAGCAGCTGATCTGTGGTCGTCCACCTCATGGCCTTCAGGAGCCAGAGGGTTGGAGTAACTCTCAGTCTCAGGCATCTCGGCGGAGTTTCAGCGCTTCTTCTTCGGTCTGAAGAGGAGCCGTTACCCGTTACCCgtcacacacaacaacaccaccaccacctcagaGTTAGTTAGTTTGTTCGGTGTGAGTTTATCTGCGCTGCTAGCCTGTTAGCTTCTTCCTTCTGCGTGTTGTTATTATTCCGCACCggaacttcttcttcttctttttttaatttccgGAGGTCTAGATGCCTTTACGGCACATTGCTGCCTCCCACA
>TU219779
ACAGTGATAGTGaaagtgtggaggaggaggaagagtaaAGGGTCACCTGGTGGTCATCTCCTCTGGGCTTCTCAAAGTAGCTGTGTCTTCTGTTCttgtcctcctctctctctctctccttctccttctctcgttctctctccctctctctctccctgtctcgctccctctctctctcccggtCTCTCTCTcggtgtctgtctttgtctttgggAGGTTTGGAGGACGAGCCGGCAGACGGGATGTAGTCCCCGATGTcctcaaaaaaactgagatcagccTCTGGAGCTCTCTTATCGTCCAGTTTacCTTTGTCCTTCTTCTTGATCTTCTTGTGTCGGGTTCCCTGTCGGAGATACGACAGGATCTGGGTCAGCTTCGAGATCACGATGTCGTTGGTGGTGAGAGTCGTCTgagcCTCCATGCTGGGACAGTCGGCCTTGCTGCGGATCAGAGTGGTGGGGATGTCGGTGTCGGTGAACTCATCGTCCAGGTCCACCACGTAGGCCATCCTGCCGGGCAGGAAGAGCTCGTTCCTCTCCACCACGCCGGTCCTGAACACCACGCGGTAGATGTTCCTGCCGAGACGAGTCTTAAACTCGATCTTCTCCTCTGGCTCCACGTCTTTCTTGGCCTCTTTCTGGACTTTCTCCAtcatgtcttcttcttctctctctttactggTGATTTCAGCTctcacCTTCTGCAGCAGAGCGAAGTCCAGACCTTTCACCAAGTGAGTGTGCTCCATGTCACCTCCCAAAAACTTAGACTCCTGGATCAGCTGACGAcgcttctctgctgcagactTATCTGCCTCAGCAGTGGGTCCTACAGCCCTGTAGTTAGCGGTGGTGCTGATGAGCTCTGTCTCTTCGTAGTCCTTGTTGACTccgtctcttctctctctggctcGGTCTCGGTACTTCTCCgccagctctctctctcgctccatCTCCTGCTGACGTAGCTTAGCATAGTAGctcttcttcttccttcgcCTCGCTGCAGGATCCTCATCCTCGTTGTAGTCCTTGGGCATTTCATGGTGTCTGGACTTGGAGGGGGGGGCCGAGGATGGCGTTGCCCTCGGCGTCATCAGCAGCTTCCTGAAGTCATCGTTGGTCAGTTTGGACTGAGCAGCTGATCTGTGGTCGTCCACCTCATGGCCTTCAGGAGCCAGAGGGTTGGAGTAACTCTCAGTCTCAGGCATCTCGGCGGAGTTTCAGCGCTTCTTCTTCGGTCTGAAGAGGAGCCGTTACCCGTTACCCgtcacacacaacaacaccaccaccacctcagaGTTAGTTAGTTTGTTCGGTGTGAGTTTATCTGCGCTGCTAGCCTGTTAGCTTCTTCCTTCTGCGTGTTGTTATTATTCCGCACCggaacttcttcttcttctttttttaatttccgGAGGTCTAGATGCCTTTACGGCACATTGCTGCCTCCCACA
>TU219780
ggGAGCTTTAATAACGCAGAATAAGTCAAAGGTTGGTTTCATTGATGTTTAATGATGATGTAATAACTTCAGATATCTCAGAGATCAGGTTTCACTTTAACATGTTTGACTGAATGTAAAAACTAGAGAAGCTGACCGACGGTCACAGTCCACCTGTAACTATTAATCTATTAATCTAATAAACTAATAATCTAATAAACTAATAATCTAATAAACTAATAATCTAATAAACTAATAATAACAGAGAGATAACAGGGACGTCCTGTTGGCAGCAGCAGCTTCAGTACTTGGGCCTCTTCACGTCCAccCCGTCAGCCTccatcttcttcctcttctctatgatCGCGCTGATCTTCTTCCACTGGCGGTCCAGCTCTGCCTTCTCATTGGTCTCTTTGAAGCGGCGAGTCTTCCTGCCTTCGGACATCTTGATGCCGTACTGGAAGGCAGCCTTGGGCAGGGCCTCCTTGTTGTTCATGTAATCAGAGTACTCCTCCTGGGTATCAAAGTCCCAGCGGCCCAGAGGACCCTTCTTATTAccCTGGTCCATCTTACTGTAGTCCACCTCTTCATCACTGTCCACAGCCAGGTCGTCCAtcGTAGCAGGGTAACACTCAGCGTATGAGTTGGATCCTCCAAAGAAGTCTCCCAACTGTTCTTTACCGTCTCTCCTCTGAGAACCAGGTTCCTGGCCCGGCCATTGGCTGCCGACTGCTCCGGCAAACTTCTCGTTGATGATCTTGATCTGCTCTCTGACTGATGCTggacCTGTATCCACCTCCAGGacCTGGTGGTCATCTCCTCTGGGCTTCTCAAAGTAGCTGTGTCTTCTGTTCttgtcctcctctctctctctctccttctccttctctcgttctctctccctctctctctccctgtctcgctccctctctctctcccggtCTCTCTCTcggtgtctgtctttgtctttgggAGGTTTGGAGGACGAGCCGGCAGACGGGATGTAGTCCCCGATGTcctcaaaaaaactgagatcagccTCTGGAGCTCTCTTATCGTCCAGTTTacCTTTGTCCTTCTTCTTGATCTTCTTGTGTCGGGTTCCCTGTCGGAGATACGACAGGATCTGGGTCAGCTTCGAGATCACGATGTCGTTGGTGGTGAGAGTCGTCTgagcCTCCATGCTGGGACAGTCGGCCTTGCTGCGGATCAGAGTGGTGGGGATGTCGGTGTCGGTGAACTCATCGTCCAGGTCCACCACGTAGGCCATCCTGCCGGGCAGGAAGAGCTCGTTCCTCTCCACCACGCCGGTCCTGAACACCACGCGGTAGATGTTCCTGCCGAGACGAGTCTTAAACTCGATCTTCTCCTCTGGCTCCACGTCTTTCTTGGCCTCTTTCTGGACTTTCTCCAtcatgtcttcttcttctctctctttactggTGATTTCAGCTctcacCTTCTGCAGCAGAGCGAAGTCCAGACCTTTCACCAAGTGAGTGTGCTCCATGTCACCTCCCAAAAACTTAGACTCCTGGATCAGCTGACGAcgcttctctgctgcagactTATCTGCCTCAGCAGTGGGTCCTACAGCCCTGTAGTTAGCGGTGGTGCTGATGAGCTCTGTCTCTTCGTAGTCCTTGTTGACTccgtctcttctctctctggctcGGTCTCGGTACTTCTCCgccagctctctctctcgctccatCTCCTGCTGACGTAGCTTAGCATAGTAGCTGCAACGACAAGGCAACACGTCAGGGACGAACACACCGATTGGTCAGTTTCAACACTAAGTTCTTATATTAGTTCTTATTTTAAATCCCC
>TU219782
ggGAGCTTTAATAACGCAGAATAAGTCAAAGGTTGGTTTCATTGATGTTTAATGATGATGTAATAACTTCAGATATCTCAGAGATCAGGTTTCACTTTAACATGTTTGACTGAATGTAAAAACTAGAGAAGCTGACCGACGGTCACAGTCCACCTGTAACTATTAATCTATTAATCTAATAAACTAATAATCTAATAAACTAATAATCTAATAAACTAATAATCTAATAAACTAATAATAACAGAGAGATAACAGGGACGTCCTGTTGGCAGCAGCAGCTTCAGTACTTGGGCCTCTTCACGTCCAccCCGTCAGCCTccatcttcttcctcttctctatgatCGCGCTGATCTTCTTCCACTGGCGGTCCAGCTCTGCCTTCTCATTGGTCTCTTTGAAGCGGCGAGTCTTCCTGCCTTCGGACATCTTGATGCCGTACTGGAAGGCAGCCTTGGGCAGGGCCTCCTTGTTGTTCATGTAATCAGAGTACTCCTCCTGGGTATCAAAGTCCCAGCGGCCCAGAGGACCCTTCTTATTAccCTGGTCCATCTTACTGTAGTCCACCTCTTCATCACTGTCCACAGCCAGGTCGTCCAtcGTAGCAGGGTAACACTCAGCGTATGAGTTGGATCCTCCAAAGAAGTCTCCCAACTGTTCTTTACCGTCTCTCCTCTGAGAACCAGGTTCCTGGCCCGGCCATTGGCTGCCGACTGCTCCGGCAAACTTCTCGTTGATGATCTTGATCTGCTCTCTGACTGATGCTggacCTGTATCCACCTCCAGGacCTGGTGGTCATCTCCTCTGGGCTTCTCAAAGTAGCTGTGTCTTCTGTTCttgtcctcctctctctctctctccttctccttctctcgttctctctccctctctctctccctgtctcgctccctctctctctcccggtCTCTCTCTcggtgtctgtctttgtctttgggAGGTTTGGAGGACGAGCCGGCAGACGGGATGTAGTCCCCGATGTcctcaaaaaaactgagatcagccTCTGGAGCTCTCTTATCGTCCAGTTTacCTTTGTCCTTCTTCTTGATCTTCTTGTGTCGGGTTCCCTGTCGGAGATACGACAGGATCTGGGTCAGCTTCGAGATCACGATGTCGTTGGTGGTGAGAGTCGTCTgagcCTCCATGCTGGGACAGTCGGCCTTGCTGCGGATCAGAGTGGTGGGGATGTCGGTGTCGGTGAACTCATCGTCCAGGTCCACCACGTAGGCCATCCTGCCGGGCAGGAAGAGCTCGTTCCTCTCCACCACGCCGGTCCTGAACACCACGCGGTAGATGTTCCTGCCGAGACGAGTCTTAAACTCGATCTTCTCCTCTGGCTCCACGTCTTTCTTGGCCTCTTTCTGGACTTTCTCCAtcatgtcttcttcttctctctctttactggTGATTTCAGCTctcacCTTCTGCAGCAGAGCGAAGTCCAGACCTTTCACCAAGTGAGTGTGCTCCATGTCACCTCCCAAAAACTTAGACTCCTGGATCAGCTGACGAcgcttctctgctgcagactTATCTGCCTCAGCAGTGGGTCCTACAGCCCTGTAGTTAGCGGTGGTGCTGATGAGCTCTGTCTCTTCGTAGTCCTTGTTGACTccgtctcttctctctctggctcGGTCTCGGTACTTCTCCgccagctctctctctcgctccatCTCCTGCTGACGTAGCTTAGCATAGTAGctcttcttcttccttcgcCTCGCTGCAGGATCCTCATCCTCGTTGTAGTCCTTGGGCATTTCATGGTGTCTGGACTTGGAGGGGGGGGCCGAGGATGGCGTTGCCCTCGGCGTCATCAGCAGCTTCCTGAAGTCATCGTTGGTCAGTTTGGACTGAGCAGCTGATCTGTGGTCGTCCACCTCATGGCCTTCAGGAGCCAGAGGGTTGGAGTAACTCTCAGTCTCAGGCATCTCGGCGGAGTTTCAGCGCTTCTTCTTCGGTCTGAAGAGGAGCCGTTACCCGTTACCCgtcacacacaacaacaccaccaccacctcagaGTTAGTTAGTTTGTTCGGTGTGAGTTTATCTGCGCTGCTAGCCTGTTAGCTTCTTCCTTCTGCGTGTTGTTATTATTCCGCACCggaacttcttcttcttctttttttaatttccgGAGGTCTAGATGCCTTTACGGCACATTGCTGCCTCCCACA
>TU219783
acacacacacacacacagaagatctTAAAGTACAGATACATGTATGACtcagtgtttatgtgtgtgtgtctctgtgtctttatgtgagtgtgtctgtgtctctgtgtttgtatgtgtgtctgtgtgtatgtgtctgtctgtgtgtgtgtgtatgtgtctgtctgtgtgtgagtgtatgtgtctgtctgcctgtgtgtgtgtgtgtgtgtgtttgtatcttaCGTAGCAGGGTAACACTCAGCGTATGAGTTGGATCCTCCAAAGAAGTCTCCCAACTGTTCTTTACCGTCTCTCCTCTGAGAACCAGGTTCCTGGCCCGGCCATTGGCTGCCGACTGCTCCGGCAAACTTCTCGTTGATGATCTTGATCTGCTCTCTGACTGATGCTggacCTGTATCCACCTCCAGGacCTGGTGGTCATCTCCTCTGGGCTTCTCAAAGTAGCTGTGTCTTCTGTTCttgtcctcctctctctctctctccttctccttctctcgttctctctccctctctctctccctgtctcgctccctctctctctcccggtCTCTCTCTcggtgtctgtctttgtctttgggAGGTTTGGAGGACGAGCCGGCAGACGGGATGTAGTCCCCGATGTcctcaaaaaaactgagatcagccTCTGGAGCTCTCTTATCGTCCAGTTTacCTTTGTCCTTCTTCTTGATCTTCTTGTGTCGGGTTCCCTGTCGGAGATACGACAGGATCTGGGTCAGCTTCGAGATCACGATGTCGTTGGTGGTGAGAGTCGTCTgagcCTCCATGCTGGGACAGTCGGCCTTGCTGCGGATCAGAGTGGTGGGGATGTCGGTGTCGGTGAACTCATCGTCCAGGTCCACCACGTAGGCCATCCTGCCGGGCAGGAAGAGCTCGTTCCTCTCCACCACGCCGGTCCTGAACACCACGCGGTAGATGTTCCTGCCGAGACGAGTCTTAAACTCGATCTTCTCCTCTGGCTCCACGTCTTTCTTGGCCTCTTTCTGGACTTTCTCCAtcatgtcttcttcttctctctctttactggTGATTTCAGCTctcacCTTCTGCAGCAGAGCGAAGTCCAGACCTTTCACCAAGTGAGTGTGCTCCATGTCACCTCCCAAAAACTTAGACTCCTGGATCAGCTGACGAcgcttctctgctgcagactTATCTGCCTCAGCAGTGGGTCCTACAGCCCTGTAGTTAGCGGTGGTGCTGATGAGCTCTGTCTCTTCGTAGTCCTTGTTGACTccgtctcttctctctctggctcGGTCTCGGTACTTCTCCgccagctctctctctcgctccatCTCCTGCTGACGTAGCTTAGCATAGTAGctcttcttcttccttcgcCTCGCTGCAGGATCCTCATCCTCGTTGTAGTCCTTGGGCATTTCATGGTGTCTGGACTTGGAGGGGGGGGCCGAGGATGGCGTTGCCCTCGGCGTCATCAGCAGCTTCCTGAAGTCATCGTTGGTCAGTTTGGACTGAGCAGCTGATCTGTGGTCGTCCACCTCATGGCCTTCAGGAGCCAGAGGGTTGGAGTAACTCTCAGTCTCAGGCATCTCGGCGGAGTTTCAGCGCTTCTTCTTCGGTCTGAAGAGGAGCCGTTACCCGTTACCCgtcacacacaacaacaccaccaccacctcagaGTTAGTTAGTTTGTTCGGTGTGAGTTTATCTGCGCTGCTAGCCTGTTAGCTTCTTCCTTCTGCGTGTTGTTATTATTCCGCACCggaacttcttcttcttctttttttaatttccgGAGGTCTAGATGCCTTTACGGCACATTGCTGCCTCCCACA

Function

symbol description
ik Acts upstream of or within heart contraction. Predicted to be active in nucleus. Is expressed in central nervous system; gut; and pharyngeal arch 3-7 skeleton. Orthologous to human IK (IK cytokine).

NR:

description
PREDICTED: protein Red

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219778 True 2855 lncRNA 0.48 18 989158 1008478
TU219779 False 1459 lncRNA 0.54 12 989158 1004351
TU219780 False 1815 lncRNA 0.50 16 994606 1010085
TU219782 False 2200 lncRNA 0.51 20 989158 1010085
TU219783 False 1823 lncRNA 0.52 15 989158 1006316

Neighbor

gene id symbol gene type direction distance location
LOC120544177 NA coding downstream 5430 983394 ~ 983728 (-)
LOC120544156 NA coding downstream 173569 806151 ~ 815589 (-)
LOC120544167 NA coding downstream 205924 778568 ~ 783234 (-)
LOC120544137 NA coding downstream 262153 694265 ~ 727005 (-)
LOC120544220 NA coding downstream 325412 636654 ~ 663746 (-)
LOC120544169 NA coding upstream 113294 1123379 ~ 1126081 (-)
nipal4 NA coding upstream 212763 1222848 ~ 1243164 (-)
ins ins,LOC108250678,LOC103130811,LOC106937878,LOC103476384 coding upstream 234441 1244526 ~ 1246965 (-)
LOC120544175 NA coding upstream 407982 1418067 ~ 1422208 (-)
LOC120544170 NA coding upstream 477318 1487403 ~ 1490956 (-)
G162322 NA non-coding downstream 85956 902893 ~ 903202 (-)
G162320 NA non-coding downstream 90798 877634 ~ 898360 (-)
G162280 NA non-coding downstream 99349 861390 ~ 889809 (-)
G162318 NA non-coding downstream 116171 843521 ~ 872987 (-)
G162281 NA non-coding downstream 124766 800378 ~ 864392 (-)
G162343 NA non-coding upstream 2924 1013009 ~ 1013344 (-)
G162340 NA non-coding upstream 4346 1014431 ~ 1061398 (-)
G162339 LOC101480504,LOC102303547,LOC102200625,LOC103372378 non-coding upstream 9211 1019296 ~ 1024528 (-)
G162354 NA non-coding upstream 118301 1128386 ~ 1129003 (-)
G162357 NA non-coding upstream 138718 1148803 ~ 1161187 (-)
chm chm,LOC104936337,LOC106675663,LOC101479632,LOC108251494 other downstream 98748 859932 ~ 890410 (-)
LOC120544221 NA other downstream 144300 829095 ~ 844858 (-)
G162311 rps14,RPS14,LOC100194652 other downstream 194427 786771 ~ 794731 (-)
ttc1 ttc1 other downstream 410309 570235 ~ 578849 (-)
LOC120544218 LOC103373995,LOC103459907,LOC105918498 other downstream 430236 543704 ~ 558922 (-)
G162352 NA other upstream 106988 1117073 ~ 1118688 (-)
G162358 NA other upstream 182717 1192802 ~ 1310616 (-)
G162359 NA other upstream 186028 1196113 ~ 1201434 (-)
G162396 NA other upstream 348101 1358186 ~ 1358523 (-)
G162398 NA other upstream 371676 1381761 ~ 1424401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G184061 NA non-coding CI01000040 null 961089 ~ 964946 (+)