G162339 (LOC101480504,LOC102303547,LOC102200625,LOC103372378)


Basic Information

Item Value
gene id G162339
gene name LOC101480504,LOC102303547,LOC102200625,LOC103372378
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 1019296 ~ 1024528 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU219785
tgtaatataactTGATAAAACAGATGTAACCATGGAGACATGTCATCAGTATGTCCTCTGACAGTCACTGTGTGTTGTGATGAACAGATGGAGACGCCGCGGAGCCAGAAAACAGCTTCAAGAAGGCGCCGAAAGACAAAGACGACAGCCTGttgcccctccccctcctcaaACCGACCTATGAGAAGCTGCCGCTCGCCTCTCAGCCGCTGTCAGTCAACCACGCTAACCCCCCCTTTGCTCAGTTCCTATTGGCCGAGGGTCTATCCTCCATGGAGACGCTGCTCACCAACATACAGGgtcTCCTGAAGGTGGCGCTAGAGAGCTCCCGCTCTCAGAGCAAACAGAGCCAGCTGGAGAGGAAAGAGTTAAAGCTgcagctggagagagagagagacgctcGCCACACACTGCAGAGACAACTCAGCTCAGAGCTGCAGTctacagTGTGGATCCAGCGGCGGctgaagaaagagaagaaggcgAAGAGGAAGCTGCAGGAAGAGTT
>TU219786
tgtctgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaggggtcTCCTGAAGGTGGCGCTAGAGAGCTCCCGCTCTCAGAGCAAACAGAGCCAGCTGGAGAGGAAAGAGTTAAAGCTgcagctggagagagagagagacgctcGCCACACACTGCAGAGACAACTCAGCTCAGAGCTGCAGTctacaggtaacacacacacacacacacacacacacacagacacacagagacacacacacacatacacacacagacacacacacacacacacacacacacacacacacacacacacacacagacagacagacagacagacagacacacagacacacagacacacacacacagacatacagacacacacacagacagacacacacacagacacacacacagacacaacacagagacacacacacacatacacacagacacacacacggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacatacagacacacacacagacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacagacacacagacacacacacagacacacacagacacaaacacacacacacacacacagacagacagacagacacacacacacacacacacagacagacagacagacagacacacacacaaacacacacacagacagacagacagacagacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219785 False 508 lncRNA 0.54 4 1021448 1024528
TU219786 True 867 lncRNA 0.50 3 1019296 1022904

Neighbor

gene id symbol gene type direction distance location
LOC120544177 NA coding downstream 35568 983394 ~ 983728 (-)
LOC120544156 NA coding downstream 203707 806151 ~ 815589 (-)
LOC120544167 NA coding downstream 236062 778568 ~ 783234 (-)
LOC120544137 NA coding downstream 292291 694265 ~ 727005 (-)
LOC120544220 NA coding downstream 355550 636654 ~ 663746 (-)
LOC120544169 NA coding upstream 98851 1123379 ~ 1126081 (-)
nipal4 NA coding upstream 198320 1222848 ~ 1243164 (-)
ins ins,LOC108250678,LOC103130811,LOC106937878,LOC103476384 coding upstream 219998 1244526 ~ 1246965 (-)
LOC120544175 NA coding upstream 393539 1418067 ~ 1422208 (-)
LOC120544170 NA coding upstream 462875 1487403 ~ 1490956 (-)
G162343 NA non-coding downstream 5952 1013009 ~ 1013344 (-)
G162338 ik,LOC106511818 non-coding downstream 9211 989158 ~ 1010085 (-)
G162322 NA non-coding downstream 116094 902893 ~ 903202 (-)
G162320 NA non-coding downstream 120936 877634 ~ 898360 (-)
G162280 NA non-coding downstream 129487 861390 ~ 889809 (-)
G162354 NA non-coding upstream 103858 1128386 ~ 1129003 (-)
G162357 NA non-coding upstream 124275 1148803 ~ 1161187 (-)
G162363 NA non-coding upstream 144266 1168794 ~ 1169404 (-)
G162377 NA non-coding upstream 217259 1241787 ~ 1242195 (-)
G162378 NA non-coding upstream 217991 1242519 ~ 1250290 (-)
chm chm,LOC104936337,LOC106675663,LOC101479632,LOC108251494 other downstream 128886 859932 ~ 890410 (-)
LOC120544221 NA other downstream 174438 829095 ~ 844858 (-)
G162311 rps14,RPS14,LOC100194652 other downstream 224565 786771 ~ 794731 (-)
ttc1 ttc1 other downstream 440447 570235 ~ 578849 (-)
LOC120544218 LOC103373995,LOC103459907,LOC105918498 other downstream 460374 543704 ~ 558922 (-)
G162352 NA other upstream 92545 1117073 ~ 1118688 (-)
G162358 NA other upstream 168274 1192802 ~ 1310616 (-)
G162359 NA other upstream 171585 1196113 ~ 1201434 (-)
G162396 NA other upstream 333658 1358186 ~ 1358523 (-)
G162398 NA other upstream 357233 1381761 ~ 1424401 (-)

Expression


Co-expression Network