G162854 (LOC103354655,LOC102298752,LOC102215500)


Basic Information

Item Value
gene id G162854
gene name LOC103354655,LOC102298752,LOC102215500
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 2251581 ~ 2347693 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU220567
ctgattatttacatggagtctggtggagtttggtgatggtgatttcggggctgtttcatgttaaactaaaatgatcttactctttaactaaaaggtctatctctgtagggatccatcccataatgttgtcagacacttagaataataatctgagtctgtcagcagctgcAGGTAAATGTTGCTCTGAACAAAAGAACCGAATGTTCGTGTTGAGTATTTGTAGAAATAAAAGCAGTCTGGCTTCACATGGCTGCGTCCCAGAATCCTCCTGGTTATTACTGCTATCATGTATACACCATAGAAAAATACTTTAGGGAACAAAAACTTTAGCTTCACTTTTAGGGATTTTACTGTTACGATAAGAGTGGTCTGCAGCAGCATGTTCTTAAATAGATTGattcagtgtatgtgtgttgtgtgtgtgtgtgtgcgtctgtgtgtgtgtgtgtttgtgtgtgtgtgcgtgtgtg
>TU220570
atatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatgtgtgtgtgtatgtgtgtgtgtgtgtatgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgcgtgcgtgtgtgtgtgtgtgcatgtgtacaaCATGAAATATATAAAGTGAATGGCACAGCGTTTCTTTTTGTTTCGGCAGTGAAAATGAAGTGTTCATGCATCTACCTATTGTTTacgtgtttgcgtgtgtgtgtgtgtttgtgtgctttgtgtgtgtgtgtgtgtatatgtatgtgtatgtgcgcACTTTGCTCCTGTATTTCCCGGTGGTCAGTGTTTGGGTGACCCTCCAGCTGCCTGGGTGCAGTTGAGCTTCCTGAATCCAGGCAGGGTGACTCGTCTGTGGGTGTAGATGTCCCGGTCGGAGCCCTGGTTCATCCGTTTGACCAGGTTCTTCTCGTACAGCAGAGGGTGGTAGGCGCCGAGCGTGCAGGCCGCGTCGTAGAAGCGCTGGTAGTAATGACAGAGCTCCGTCTTCCTGCGGGACGGCAGGAACTC

Function

NR:

description
PREDICTED: beta-galactoside alpha-2,6-sialyltransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220567 False 470 lncRNA 0.40 3 2251581 2284347
TU220570 True 582 lncRNA 0.50 2 2283050 2347693

Neighbor

gene id symbol gene type direction distance location
ncf1 NA coding downstream 7494 2235522 ~ 2244087 (-)
trnae-cuc_26 NA coding downstream 21486 2230024 ~ 2230095 (-)
st6gal1 st6gal1,LOC103354655 coding downstream 25125 2186780 ~ 2226456 (-)
LOC120544242 NA coding upstream 31874 2379567 ~ 2381215 (-)
LOC120543944 NA coding upstream 129158 2476851 ~ 2487119 (-)
pcf11 pcf11 coding upstream 466368 2814061 ~ 2855055 (-)
LOC120544248 NA coding upstream 507333 2855026 ~ 2868330 (-)
LOC120543771 NA coding upstream 525536 2873229 ~ 2898462 (-)
G162852 NA non-coding downstream 12597 2238284 ~ 2238984 (-)
G162824 NA non-coding downstream 20151 2148225 ~ 2231430 (-)
G162860 NA non-coding upstream 20802 2368495 ~ 2378616 (-)
G162866 NA non-coding upstream 80580 2428273 ~ 2445268 (-)
G162873 NA non-coding upstream 161304 2508997 ~ 2509289 (-)
G162874 NA non-coding upstream 168039 2515732 ~ 2516016 (-)
G162875 NA non-coding upstream 172147 2519840 ~ 2521948 (-)
LOC120544171 NA other downstream 360158 1887629 ~ 1891423 (-)
G162787 NA other downstream 415079 1835969 ~ 1836502 (-)
G162399 NA other downstream 810763 1437253 ~ 1440818 (-)
G162398 NA other downstream 827180 1381761 ~ 1424401 (-)
G162396 NA other downstream 893058 1358186 ~ 1358523 (-)
G162910 NA other upstream 479396 2827089 ~ 2829594 (-)
LOC120543772 NA other upstream 690230 3037923 ~ 3095474 (-)
LOC120544249 alg8 other upstream 831074 3178767 ~ 3233282 (-)
LOC120544311 LOC101470105,LOC107380983,LOC102214284 other upstream 838277 3185970 ~ 3198248 (-)
G163259 NA other upstream 1522632 3870325 ~ 3874115 (-)

Expression


Co-expression Network