G162878


Basic Information

Item Value
gene id G162878
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 2570566 ~ 2570799 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU220595
TTCAGAGGAGGATGCCTCATAATCAGGGTCCTCCTCAACATTATCCTCAGTCTCGGACACATTCTCCTCTATGTCACTTTCAGTGTCAAAGAGCTGTGACAAAACTTCACTGACAGAAAACCGTTTCTTGCAGGCCATTTTCAAATGAAAGTGAGTGTACAGAGAGAGCACATCGCGCACCAAGAGAAATGGTTTAGAAGGCAGCGGTGCCTGCGTGTGAGCTTTTATATGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220595 True 234 lncRNA 0.46 1 2570566 2570799

Neighbor

gene id symbol gene type direction distance location
LOC120543944 NA coding downstream 83447 2476851 ~ 2487119 (-)
LOC120544242 NA coding downstream 189351 2379567 ~ 2381215 (-)
ncf1 NA coding downstream 326479 2235522 ~ 2244087 (-)
trnae-cuc_26 NA coding downstream 340471 2230024 ~ 2230095 (-)
trnay-gua_44 NA coding downstream 363358 2207120 ~ 2207208 (-)
pcf11 pcf11 coding upstream 243262 2814061 ~ 2855055 (-)
LOC120544248 NA coding upstream 284227 2855026 ~ 2868330 (-)
LOC120543771 NA coding upstream 302430 2873229 ~ 2898462 (-)
LOC120543770 NA coding upstream 311556 2882355 ~ 2884569 (-)
LOC120543768 NA coding upstream 353683 2924482 ~ 2937752 (-)
G162875 NA non-coding downstream 48618 2519840 ~ 2521948 (-)
G162874 NA non-coding downstream 54550 2515732 ~ 2516016 (-)
G162873 NA non-coding downstream 61277 2508997 ~ 2509289 (-)
G162866 NA non-coding downstream 125298 2428273 ~ 2445268 (-)
G162860 NA non-coding downstream 191950 2368495 ~ 2378616 (-)
G162879 NA non-coding upstream 12670 2583469 ~ 2583703 (-)
G162884 NA non-coding upstream 34181 2604980 ~ 2605597 (-)
G162893 NA non-coding upstream 65877 2636676 ~ 2636912 (-)
G162902 NA non-coding upstream 110079 2680878 ~ 2681733 (-)
G162903 NA non-coding upstream 111008 2681807 ~ 2682207 (-)
LOC120544171 NA other downstream 679143 1887629 ~ 1891423 (-)
G162787 NA other downstream 734064 1835969 ~ 1836502 (-)
G162399 NA other downstream 1129748 1437253 ~ 1440818 (-)
G162398 NA other downstream 1146165 1381761 ~ 1424401 (-)
G162396 NA other downstream 1212043 1358186 ~ 1358523 (-)
G162910 NA other upstream 256290 2827089 ~ 2829594 (-)
LOC120543772 NA other upstream 467124 3037923 ~ 3095474 (-)
LOC120544249 alg8 other upstream 607968 3178767 ~ 3233282 (-)
LOC120544311 LOC101470105,LOC107380983,LOC102214284 other upstream 615171 3185970 ~ 3198248 (-)
G163259 NA other upstream 1299526 3870325 ~ 3874115 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G54855 NA non-coding NC_047597.1 CM018543.1 29262760 ~ 29263429 (-)