G162940


Basic Information

Item Value
gene id G162940
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 3090272 ~ 3090937 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU220693
actgatgtctctacatactactctctactgatgtctctctacatactactctctactgctgtctctctacatactactctctactgttgtctctctacatactactctctaccgttgggtctaacgttagaggTAAAAGTGACTGTTTTtatcaaaggagtctggtggctttgaagagttAACGCAGAcataacggcttcagttccccgtcgtaAAGTATGCAGAACAAAACCCCCCctttgtttatttaaaccagTTTATACCAGTTTGAACTGGTTTATGCTATGGTATTAATTATTAAAGGTCTTTTAAGACATCTAACCTGCAGGAAATACCCATCTCCAGCCACCAAGTCCTTCACCCCTATCTGCATGAACCATGTTTGGATCGGACTACATGTTGGAAATGTCATTTCTTTGCATCTTAAAAAGTACGTTTACACCCATCAGCCTCCGGTTTTAAATGTTCAGTCGACAGTGTTTgtcagcggtggaaagtaactaagtacatgtactccagtactgtctgtacttcagtccaaatgttgagttacttgtactttacttgagtctttc
>TU220695
actgatgtctctacatactactctctactgctgtctctctacatactactctctactgttgtctctctacatactactctctaccgttgggtctaacgttagaggTAAAAGTGACTGTTTTtatcaaaggagtctggtggctttgaagagttAACGCAGAcataacggcttcagttccccgtcgtaAAGTATGCAGAACAAAACCCCCCctttgtttatttaaaccagTTTATACCAGTTTGAACTGGTTTATGCTATGGTATTAATTATTAAAGGTCTTTTAAGACATCTAACCTGCAGGAAATACCCATCTCCAGCCACCAAGTCCTTCACCCCTATCTGCATGAACCATGTTTGGATCGGACTACATGTTGGAAATGTCATTTCTTTGCATCTTAAAAAGTACGTTTACACCCATCAGCCTCCGGTTTTAAATGTTCAGTCGACAGTGTTTgtcagcggtggaaagtaactaagtacatgtactccagtactgtctgtacttcagtccaaatgttgagttacttgtactttacttgagtctttc

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU220693 True 575 lncRNA 0.40 2 3090272 3090937
TU220695 False 547 lncRNA 0.40 2 3090272 3090937

Neighbor

gene id symbol gene type direction distance location
ncbp3 LOC102780188 coding downstream 4055 3070070 ~ 3086217 (-)
LOC120543768 NA coding downstream 152520 2924482 ~ 2937752 (-)
LOC120543771 NA coding downstream 191810 2873229 ~ 2898462 (-)
LOC120543770 NA coding downstream 205703 2882355 ~ 2884569 (-)
LOC120544248 NA coding downstream 221942 2855026 ~ 2868330 (-)
LOC120575705 NA coding upstream 256683 3347620 ~ 3354553 (-)
trnad-guc_8 NA coding upstream 314250 3405187 ~ 3405258 (-)
trnav-aac_3 NA coding upstream 315093 3406030 ~ 3406102 (-)
trnav-cac NA coding upstream 318869 3409806 ~ 3409878 (-)
trnav-cac_1 NA coding upstream 325429 3416366 ~ 3416438 (-)
G162939 NA non-coding downstream 575 3087921 ~ 3089697 (-)
LOC120543774 NA non-coding downstream 54520 3029974 ~ 3035752 (-)
G162922 NA non-coding downstream 175703 2914009 ~ 2914569 (-)
G162906 NA non-coding downstream 225046 2824866 ~ 2865226 (-)
G162938 NA non-coding upstream 10515 3101452 ~ 3534641 (-)
G162930 NA non-coding upstream 14125 3105062 ~ 3114875 (-)
G162945 NA non-coding upstream 43449 3134386 ~ 3135006 (-)
G162950 NA non-coding upstream 70028 3160965 ~ 3215972 (-)
G162954 NA non-coding upstream 72546 3163483 ~ 3165886 (-)
G162910 NA other downstream 260678 2827089 ~ 2829594 (-)
LOC120543939 NA other downstream 438869 2342150 ~ 2651403 (-)
LOC120544171 NA other downstream 1198849 1887629 ~ 1891423 (-)
G162787 NA other downstream 1253770 1835969 ~ 1836502 (-)
G162399 NA other downstream 1649454 1437253 ~ 1440818 (-)
LOC120544249 alg8 other upstream 87830 3178767 ~ 3233282 (-)
LOC120544311 LOC101470105,LOC107380983,LOC102214284 other upstream 95033 3185970 ~ 3198248 (-)
G163259 NA other upstream 779388 3870325 ~ 3874115 (-)
rnasekb rnasek,LOC107554319,LOC101475670 other upstream 1056926 4147863 ~ 4157624 (-)
LOC120544555 siah2,LOC101471392,LOC102786130 other upstream 1190836 4281773 ~ 4821872 (-)

Expression


Co-expression Network