LOC120544555 (siah2,LOC101471392,LOC102786130)


Basic Information

Item Value
gene id LOC120544555
gene name siah2,LOC101471392,LOC102786130
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 4281773 ~ 4821872 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU221326
TCGGCTGGCTGCGGGCTGTCCCTGCACCACACGGAGAAACCGGACCACGAGGAGGTGTGTGAGTTCAGGCCGTACACCTGTCCGTGTCCCGGGGCGACCTGCAAGTGGCACGGCTCTCTGGAGGCCGTCATGCCGCACCTGATGCACGCGCACAAGTCCATCACCACGCTGCAGGGTGAGGACATAGTCTTCCTGGCGACAGACATCAACCTGCCCGGCGCGGTGGACTGGGTGATGATGCAGTCCTGTTTCAGCCACCACTTCATGCTGGTGCTGGAGAAGCAGGAGAAGTACGAGGGCCACCAGCAGTTCTTCGCCGTCGTGCTGCTCATCGGCACGCGCAAGCAGGCCGAGAACTTCGCCTACCGCCTCGAGCTCAACGGCAACCGGCGCCGGCTGACCTGGGAGGCCACGCCGCGCTCCATCCACGACGGCGTGGCCGCCGCCATCATGAACAGCGACTGCCTGGTGTTCGAC
>XM_039778420.1
TTGATACAAACCGACAGCCGCCATGTTTTGTCTCAAGGGGAGAGCCAGACACTCAAGGCACGTAGCAGCAGCGGGAGGAGCGAGCGACGTCGTCCGGTAGTAAACAGTAGATGACGTTACCACTCGCCCGGCAGTTCACAGGAAACGGACCGGAGCTGGAAGATATGAGCCGTCCGTCCCCAGACGGAGCCGGTGGTGGTGGAGGACTCGGGGCCGGGAAAGTGGGCGGAGGAAAGCACGGAGGAGCCGCGGCGGCTGTTACGGGAGTAGCCGCCGGAGTGAGCACCGTGGCCGGGTCCGCTGTCCTTTCCCCTTCCCCCGCTGTGTCTCTGTCGCTCGGTCTACCGGGGCAGTCCCCGGAGCTCACGGCGCTGTTCGAGTGCCCGGTATGCTTCGACTATGTCCTGCCGCCCATCCTGCAGTGCCAGGCGGGTCACCTGGTGTGCAACCTGTGCCGCCAGAAGCTGAGCTGCTGTCCGACCTGCCGAGGCCCGCTCACCCCGAGCATCCGGAACCTGGCCATGGAGAAGGTGGCGTCCACTCTGCCGTTCCCCTGCAAGtaCTCGTCGGCTGGCTGCGGGCTGTCCCTGCACCACACGGAGAAACCGGACCACGAGGAGGTGTGTGAGTTCAGGCCGTACACCTGTCCGTGTCCCGGGGCGACCTGCAAGTGGCACGGCTCTCTGGAGGCCGTCATGCCGCACCTGATGCACGCGCACAAGTCCATCACCACGCTGCAGGGTGAGGACATAGTCTTCCTGGCGACAGACATCAACCTGCCCGGCGCGGTGGACTGGGTGATGATGCAGTCCTGTTTCAGCCACCACTTCATGCTGGTGCTGGAGAAGCAGGAGAAGTACGAGGGCCACCAGCAGTTCTTCGCCGTCGTGCTGCTCATCGGCACGCGCAAGCAGGCCGAGAACTTCGCCTACCGCCTCGAGCTCAACGGCAACCGGCGCCGGCTGACCTGGGAGGCCACGCCGCGCTCCATCCACGACGGCGTGGCCGCCGCCATCATGAACAGCGACTGCCTGGTGTTCGAC

Function

symbol description
siah2 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Involved in negative regulation of apoptotic process; regulation of circadian rhythm; and ubiquitin-dependent protein catabolic process. Acts upstream of or within cellular protein catabolic process and negative regulation of canonical Wnt signaling pathway. Located in cytosol and nucleoplasm.

NR:

description
E3 ubiquitin-protein ligase Siah2

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08742 SIAH2; E3 ubiquitin-protein ligase SIAH2

RNA

RNA id representative length rna type GC content exon number start site end site
TU221326 False 477 TUCP 0.65 2 4281773 4286796
XM_039778420.1 True 1043 mRNA 0.65 3 4281773 4821872

Neighbor

gene id symbol gene type direction distance location
LOC120544550 LOC101067509,LOC102791768 coding downstream 21614 4249126 ~ 4260159 (-)
LOC120544557 LOC104931097,LOC103374139,LOC102075861 coding downstream 73780 4198358 ~ 4207993 (-)
LOC120543691 NA coding downstream 144739 4127789 ~ 4137034 (-)
LOC120543692 NA coding downstream 156960 4112869 ~ 4124813 (-)
LOC120543678 NA coding downstream 395900 3868758 ~ 3885873 (-)
LOC120544239 LOC104943257 coding upstream 158547 4980419 ~ 4981366 (-)
LOC120544283 NA coding upstream 231483 5053355 ~ 5054317 (-)
LOC120544284 NA coding upstream 240163 5062035 ~ 5062985 (-)
LOC120544286 NA coding upstream 251884 5073756 ~ 5074691 (-)
LOC120544289 NA coding upstream 260638 5082510 ~ 5083454 (-)
G163300 NA non-coding downstream 2461 4183991 ~ 4279312 (-)
G163330 NA non-coding downstream 7406 4218862 ~ 4274367 (-)
LOC120544582 NA non-coding downstream 9615 4267381 ~ 4272158 (-)
G163326 NA non-coding downstream 46254 4233868 ~ 4235519 (-)
G163333 NA non-coding downstream 63273 4218122 ~ 4218500 (-)
G163444 NA non-coding upstream 67763 4889635 ~ 4889841 (-)
G163447 NA non-coding upstream 80191 4902063 ~ 4902317 (-)
G163450 NA non-coding upstream 121304 4943176 ~ 4943391 (-)
G163456 NA non-coding upstream 333965 5155837 ~ 5156159 (-)
G163460 NA non-coding upstream 374789 5196661 ~ 5197174 (-)
rnasekb rnasek,LOC107554319,LOC101475670 other downstream 124149 4147863 ~ 4157624 (-)
G163259 NA other downstream 407658 3870325 ~ 3874115 (-)
LOC120544249 alg8 other downstream 1048491 3178767 ~ 3233282 (-)
LOC120544311 LOC101470105,LOC107380983,LOC102214284 other downstream 1083525 3185970 ~ 3198248 (-)
LOC120543772 NA other downstream 1186299 3037923 ~ 3095474 (-)
G163767 NA other upstream 2435266 7257138 ~ 7286265 (-)
wwc1 wwc1 other upstream 2509042 7330914 ~ 7398125 (-)
LOC120543652 LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849 other upstream 3039581 7861453 ~ 7887088 (-)
G164022 kctd7,LOC102776841 other upstream 3524956 8346828 ~ 8352505 (-)
rabgef1 rabgef1,LOC102778478 other upstream 3546623 8368495 ~ 8380575 (-)

Expression


Co-expression Network