LOC120544552 (LOC104935312,LOC100692486,LOC101485649,LOC106922321,LOC102232317,LOC102292363)


Basic Information

Item Value
gene id LOC120544552
gene name LOC104935312,LOC100692486,LOC101485649,LOC106922321,LOC102232317,LOC102292363
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 4606736 ~ 4694616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU221460
CGGGGTTCAAGCCTGAACTACAGACACAAGTATCTGCGATCAGAAATGTTCACTTTAGACTTTTTGGAGAGTTAAACTGTGATTGATGATGAGAAAACATTTCAGAAACGGCATATTATTTTAGTATTCttcatattttgaatattttggCCTGAGCAGCGATGCCTAAGGGTCCCAACGTGTTtagtcactcagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacagagaaacacacacacacacacacacacacacacaacaacgTTCTCTGCAAGTACAATTACTGATCACTGCTCTCTTTGAATTTTGAgcgttttatttaattttttagcatttgagAAAACGTGTGAATGGTTTAAAGGTACCGTGACTCAGCGTAGACACACAGTCTCTGACTACCCATCAACACACCTTCCTCTAATATTACTCACAATTATTCATCATTTcagctttgtttttttactgaaaaataAGGTATAACTTCATATACACGAGGTTTCTTGACCATGAACTCCAAAAAATAAGAAACTTTAGTGGTTAGAAGTTGGTGTTGGTGGTAGTGGAAGTGAGAAAATGTGTCTAAAACATtgcaaaaagggacaaaaatgtcagaaagtgtCAAAGTCAACGAAAAAAATcgtcaaaaatgtgttttaaaagggTTAAtctgtaatcttctgcatgtgtgtgttgctgtgtgtccctgtgtgtgttacaagcatagtgtgtgtccctgtgtgtgttacaagcatagtgtgtgtgcgctgtgtaCGAGCCTagcagcattttactaatgctctgttaaaataacaatgaaatgctgcgttattgactttagaccaggtttttgttggtcaatggtgccatcacttcccgctgcaTCAAGATAACaattctcccagaatgcacctgaacacacctccctgtaagaccagcgcgcccagaatgtacctgaacacacctccctgtaagaccagcacgcccagaatgtacctgaacacacctccctgtatgaccagcacgcccagaatgcacctgaacacacctccctgtaagaccagcacgcccagaatgcacctgaacacacctccctgtaagaccg
>TU221464
GCTGAATCTGtttagctgttgtgtgtgtgtggcgcgtgtGCTGGCGTGTGTGTAGAAACactggctctgattggctaccaTGAAACATGACTCTGCCTTAGCCAATCATAATCGCTTACCTCGTTATTAACCCACCTCCTCACTAGCTGCGAGCCAGGGGTGCGTTCGGATTACACTTTATTCAATCAGTGCCTAGTAACGCACCGCATTTAACGTCCAGTAACGGTAACGGCGCTGTAACGAcgggaaaagtaattagttagatCACCCCGTTACTGAAAACATAACGCCGTTACCTGACGCCGTTCTTTTAAACGGCGTTATTCCAAACACTGGTGTTTGTGTCGGAGCAGCGCTCTCTGTCTACTTTCAGAGAGGACAggctccTTCAACAAAGATCTCCATCCTCCTCCTACTTTATTTAAAGTTATATTCTGGTTGGGATACTTCAACAGCTGCCTGAACCCCATCATCTACCCCTGCTACAGCCGCGAGTTCAAGCAGgcgTTCATCAGGATCCTGCGCTGCCGCTGGAAGAGGAAGCGCCAGGGCTGGCAGGCGTACTACAACTACCGGCGCCAAGAGGGCTCGCACGCCACGTCCATCCTGAACGGCAGCCAGCAGACGCTGGCGTCCGTCGGCCCCAGCCCGCGCTGCGTGGCCTCCAGGCTCCGCCCCCCCTCCTCCAGGCTCCGCCCCGCGTCCACGCTCGCCGAGGGTCCCGGGACGCCAGGGCTCGGCACGGGCGCAGACAGAAGCGCTAACTGATATACACACAGCCTGCCGCTCACAGGAAGTGGCtgttctttttaaaaacacGCACAGGTGTCACCGATGACATCACGAGACGCTCTGCTCGCTCACGGAGGAGACGGAGGAGTGTTAGGACCGTCCTCGGCATCGAACCTCCGGCTGTGCTCGGCGCATTCTCGGCCTAaaccctttttaaaatgtctatatcagaaatatgggtttctttttaatcacattacccacaaactctcacacacacacacactcacacaatcacgcacacacacagacagacatacagacatacacacacacacacacacacagacacagagacacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>XM_039778415.1
agagagagagagagagagtctctcGTGAGAGAAAGATGAATTTtcgtgtctctttttttcttgtcttaaCTCGGAACTTTCCCACATTAAACACGTGGACCATAAAAGGACACAGAGATCCGTGACCCGCTACTGAAGCAGCCGTTTAACCCGAGGAGGAGCTCCAACGGCCGGCACGAGGCTTGTTTGTTTGACCGCGCGGGGACACCGAGCTGACCCGATCCTacacctgctgctgctctcgCGCCTCCCGCGTAAACCGAGCCCGGCACGAGCTGCTCCTCTCAGCCATGGGGTTAAATCTCAAACATGAGCGCTATCATCAGGTTCACTTTTTACGGATTTTTACCGGAAAACATTCGGATTTTTTAAACGTTAAAGAGCCGCGAGGACCGTTAAACTGCTGCTGAGACACTGAAGAGAAAACACGGAGATTATAGCTGCTGGATCTGTCAAAGTAGGTCCTAACGGTCACGGtccagtttgtttttaattaaatatttatggTTTTAAGTTAATTTAAACGAAAATAACCGTGAagaaaccgtttttttttttaaacacatagaTTATAGCTGGTGAATCTGTCAAAGTAGGTCCTAATGGTCACAGtccagtttgttttttaatgaaatatgtATGGTTTCAAGTTAATTTAAACGAAAATAACTGTGAggaaaccgtttttttttttaacacagattattgctgctgaatctgtcaaaGTAACTGTCCCAgtacatttcttttaaattaaataaggtagcctacaaaaaaaataaaataaataaataaaccgttttttttttttaaacacggAGATTAGCTGCTGTCTTTGTCCCATAATCTCTCAAAGTAAcggttattttttcttcttctattagCCTAAATAGGCATTTTCCATGGTTTAAAGTGAATGTGGAAGAAAACAACCGTTAAgaaaccgtttttttttctctctgctatAATGAGTCTGTGGACTAACGGCTCCTCCGCGGATCTTAACGTCACTATGAGTCTGTGGACTAACGGCTCCTCCGCGGATATTGACGCCGGGACTCAGCGTCAACCGCCCGGCTCCAACTCCTCCAACAGCACCAACGGCTCCCGGCACGACGCCGCCCCGCTGGACCTGAGTCGGGCGGTGCCGGTGGGCATGGTGCTGGCTTTCTTCATCATGTTCGCCATCGTGGGGAACATCCTGGTAATCCTGTCGGTGGTTTGTAACCGACACCTGCGGATCCCGACCAACTACTTCATCATCAACCTGGCCATCGCGGACCTGCTGCTGGGAACCACCGTGCTGCCGGTTTCCGCCACGCTGGAGGTCCTGGATTACTGGGTGTTTGGGCGGATCTTCTGTGACATCTGGGCAGCTGTGGACGTGCTGTGCTGCACGGCGTCCATCATGTCTCTGTGCGTCATCTCCATCGACCGATACATCGGCGTGCGCTACCCGCTGCAGTACCCCACCATCGTCACCGAGAAGCGGGCGCTGCTCGCCATGCTGGGCGTCTGGATCCTCTCCATCGTCATCTCCATCGGCCCGCTGCTGGGCTGGAAGCAGACGCCATCACAGGACGCCACCGAGTGCGCCATCACCCAGGAGCCGTTCTACGCCCTCTTCTCGTCGCTCGGCTCCTTCTACATCCCGCTGGCCGTGATCCTCGCCATGTACTTCCGCGTCTACGTCGTGGCCAAACGCACCACCAAGAACCTGGAGGCCGGCATGATGAAGGAGCGCATGGCGGACTCCAACGAGCTCACCATGCGGATCCACTGCCGCAGCCAGCAGATCCAGGAGCTGTGCCCCGCCAACGCCAACGCCAACGCCGGGGGCGGGGCTTCGGCCGCACGCAGCTCGCTCACCGTCAAGCTGCTCAAGTTCTCCCGGGAGAAGAAGGCCGCCAAGACGCTGGGCGTGGTGGTGGGCATGTTCATCCTCTGCTGGCTGCCCTTCTTCCTGGTGCTGCCCATCGgctccTTCAACAAAGATCTCCATCCTCCTCCTACTTTATTTAAAGTTATATTCTGGTTGGGATACTTCAACAGCTGCCTGAACCCCATCATCTACCCCTGCTACAGCCGCGAGTTCAAGCAGgcgTTCATCAGGATCCTGCGCTGCCGCTGGAAGAGGAAGCGCCAGGGCTGGCAGGCGTACTACAACTACCGGCGCCAAGAGGGCTCGCACGCCACGTCCATCCTGAACGGCAGCCAGCAGACGCTGGCGTCCGTCGGCCCCAGCCCGCGCTGCGTGGCCTCCAGGCTCCGCCCCCCCTCCTCCAGGCTCCGCCCCGCGTCCACGCTCGCCGAGGGTCCCGGGACGCCAGGGCTCGGCACGGGCGCAGACAGAAGCGCTAACTGATATACACACAGCCTGCCGCTCACAGGAAGTGGCtgttctttttaaaaacacGCACAGGTGTCACCGATGACATCACGAGACGCTCTGCTCGCTCACGGAGGAGACGGAGGAGTGTTAGGACCGTCCTCGGCATCGAACCTCCGGCTGTGCTCGGCGCATTCTCGGCCTAaaccctttttaaaatgtctatatcagaaatatgggtttctttttaatcacattacccacaaactctcacacacacacacactcacacaatcacgcacacacac

Function

NR:

description
PREDICTED: alpha-1A adrenergic receptor isoform X1

GO: NA

KEGG:

id description
K22790 Octbeta; octopamine receptor beta

RNA

RNA id representative length rna type GC content exon number start site end site
TU221460 False 1148 lncRNA 0.42 2 4640511 4676792
TU221464 False 1145 lncRNA 0.54 4 4606736 4660942
XM_039778415.1 True 2637 mRNA 0.53 5 4641837 4694616

Neighbor

gene id symbol gene type direction distance location
LOC120544576 LOC107723971,LOC107375340,LOC107690788,LOC107579420 coding downstream 2093 4604055 ~ 4604643 (-)
LOC120544567 si:ch1073-153i20.5,si:ch73-368j24.13,LOC103462478,LOC107386469,LOC102204254,LOC103381127 coding downstream 3741 4601695 ~ 4602995 (-)
LOC120544579 LOC107375340,LOC107690788,LOC107719248,LOC107579420 coding downstream 111849 4494519 ~ 4494887 (-)
LOC120544570 LOC104935308,LOC104932967 coding downstream 132711 4473257 ~ 4474025 (-)
LOC120544559 NA coding downstream 137802 4468200 ~ 4468934 (-)
LOC120544564 NA coding upstream 22404 4717020 ~ 4750395 (-)
LOC120544239 LOC104943257 coding upstream 285803 4980419 ~ 4981366 (-)
LOC120544283 NA coding upstream 358739 5053355 ~ 5054317 (-)
LOC120544284 NA coding upstream 367419 5062035 ~ 5062985 (-)
LOC120544286 NA coding upstream 379140 5073756 ~ 5074691 (-)
G163390 LOC104935308,LOC104932967 non-coding downstream 23149 4564029 ~ 4583587 (-)
G163377 NA non-coding downstream 25833 4559504 ~ 4580903 (-)
G163376 NA non-coding downstream 27066 4577538 ~ 4579670 (-)
G163317 NA non-coding downstream 186167 4341560 ~ 4420569 (-)
G163328 NA non-coding downstream 194965 4345573 ~ 4411771 (-)
trnad-guc_9 NA non-coding upstream 62045 4756661 ~ 4756732 (-)
trnad-guc_10 NA non-coding upstream 63822 4758438 ~ 4758509 (-)
trnag-gcc_2 NA non-coding upstream 66810 4761426 ~ 4761496 (-)
trnag-gcc_3 NA non-coding upstream 67446 4762062 ~ 4762132 (-)
trnag-gcc_4 NA non-coding upstream 68016 4762632 ~ 4762702 (-)
LOC120544568 LOC104932967,LOC104935308 other downstream 113385 4491005 ~ 4493351 (-)
taf9 NA other downstream 163174 4441989 ~ 4443562 (-)
G163334 NA other downstream 302688 4302566 ~ 4304048 (-)
rnasekb rnasek,LOC107554319,LOC101475670 other downstream 449112 4147863 ~ 4157624 (-)
G163259 NA other downstream 732621 3870325 ~ 3874115 (-)
LOC120544563 NA other upstream 40598 4735214 ~ 4750430 (-)
G163767 NA other upstream 2562522 7257138 ~ 7286265 (-)
wwc1 wwc1 other upstream 2636298 7330914 ~ 7398125 (-)
LOC120543652 LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849 other upstream 3166837 7861453 ~ 7887088 (-)
G164022 kctd7,LOC102776841 other upstream 3652212 8346828 ~ 8352505 (-)

Expression


Co-expression Network