G163624


Basic Information

Item Value
gene id G163624
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 5650699 ~ 5653658 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU221777
AAAGATCGCTTATAATTGgagaatcgattattttaaGACAGCCCTATTAATTGCAAAATAAATCTGGATTGAAGTTGCAGATTTTCGTCATTATCAACTCTCCAACAAAACGACAGATATTTCATCAGTCGGCACACTTGAGCGATACATTTTGCGGAGTTGGAGAATGATGCTTATATCGTTTTTTCCAATTATAAGTAGAACAAGTTCTGCAGATAGACACTTCATTTTAACCTTAGAAATCCATACAGCCGAGACATAAGTGAGCGCTGAAATGGAAAAAGCTAAGTGATATTACGTCAGTCACCTTTTTATTCAGCATGGTCACAATCCTGACTTTGCACTCCTGATAGAAGAGCGTAgagtttttaatgtattttgggGTTTCTGTGTCTTTTCTCCCCTAGCGTTCTAGCTCCACTCCAGGACAGCTTCTACATTATTGTAGAATTGTTAAGGCTACGTTTGCATGgctacgttttggtttgaaaatgaATATATTCTGCtacatttccccctctcattccccctgctctgacgtttccccctctcgttccccctgctctggcgtttccgagcccctaaaccggagacatttggaaactcttctgacccgttttggtttggaatccgCTGGGTTGTGTTGCAGACGGCTGCCagcggagacctttggcaacaccgacGCCAACGTTTTGCcacctgattgggtcttatcggtTACAACGTCTCGTTTTCTGAGActaaagctactaacgttacaaTGGCCACTACCAGCAGTGGGCAGAGTCTACACGCTACTTCCTGTTTTTGTCCAGTTTAACAGAATGTTGAGgagatattttggtttgggcTTGTTAGTTTAAATGGAGATTAGTTATTCTACTGGACATAAAAACACtggacataaaaacacaaaaaagatcgcttttggctcaaaacttaacgtttaaaaaccaaaacatagcgatgtaaatgtagcctgagtCGCTGATGTTTCGGCTACAGGACCAAACTGAACGCCCATCTAAACCTTTCCACAGCCGGGTTCCTCTTTACGTTTCCTGcacttcttccttttctttgtcCATTTTTAAACACTGTTTTTCGGGGCAATGTGCGTCAGCGTCCTGTCCAATCTGAGGACTTTATTGGAAAGGACTATTGTGACTGTTTAATGCGAACACTGTACTCGTGTAGAGGACTGAATGCACAGGGCAACATGTTGGGCTGAAATGCAGCACTGGTTTAATGGTTTAACTGATGTCAAAGCGTGAATGAACGTCGGTGCCATTACTGTGTTCTACACAAACTCCCATCTTTACAGAATCATTCATCTGAGCTTTGATCAACAGTCAATGCAGAAATAGACCTTAAACGATCGCTGCGGGGAAAAGTATTGCCCAACATGTTGCTAACTGTATCCCTTGAAGTAGAGTTTGTAATTGTGAAAGCTtctttgggttttttttgttttttggggggggttatCAGAGTACATAGTACCTGTCCTTTCCATTGCACTTGACATGTTTTTATGACATCGGACAGTAACTTGGGTCGAGTCtcaagcccagttcagaccaaagattctgcgacgagacgagttgaaacttgtAACGCatcggtctgcagcgttctgaaacctgccagcTCACACTGATGCGAAAAGACGGTATATCACCTGCATAGAAACGACTCTCtgtacttccgttctaacttcTGACTTTTCGTGGACAGTCCCCTTTAATTAACTGTACAGTAAAAGGAGCAGCTTTCACCTCTACGGCTAAAGCCGGACTTAATGGTTGTGCAgaggctccacacagagctttcaccgtagagaagtaagtggcctgaagtctatacttgtgcgttggtgtgtgcgtcgatctctttaagagaatagtagggccggcatgtgtgtgtgtgcgtggggagtgtgtggtagagcgagtgagagagtgacggcgattatcttcAGAGCGAGTTGGGACTCTAGAGTCcaagtgagagaaccaaagagtctcctctgttctttctgaccacggtgggagatctggagcaggaagaAGTTAAcactctccttgatctcatgttgttgacggagaaggagaaccaggaaatgaggagggtgaaatgcaacgctaccaagccacggccgagcgacgtgcgtcgccgcgacgtgtagttaaattttttgagaGGTCCGcctcaggctacggcgtagggtcggtATCTCCTTGTAactacgtacgtagccacggctAAATTTCCAGCTGTAGTGCCCGACCAGTTGTAAATAGGCAtcctaaaaatataaattacattACGTGTATAATTAAAGCAGCCCTAAGCATAATGGAGTAAGACATACAAACATGTGGCACCCAACTGAAGCAGGCACAAACAAGCGCAAGCACAGATGATGACAAGGCATCAACGCAGTTCATGCAGTAAAGACAATACGAaggagaaaagggaaaagaaaagagagcaaAGAAAAGACAAGTCTCATCGCGAATCTTTGGCCTGAACTGGAACCTTGAATggttactgtttatttactggTTGCTTTATTCCAGCTGTTGTGGTAACGTATTAAAACCTCTCGTTACTGTGAATCATCGACATGAAAACCTCCTCGATCGGCATTCGACAGCGTGAACATCCAGTTCCAAGTAtacaaacacatttcttttgTTGTGTTCCCACAGTTTTTGGAACTGCGCTGCCAtttgtttgttgctgttttaaattacttttcatTTAAGTGGCGAATTTTCGGACTACAATTCGGCGAGCGATGTAGAGAAATCTCTTTACACGCAAGTGACTCTGGATGTGTAGGGGAGTGTACATTTTGTAtctcatacaaaaaaaaaatatccaatatttttttctactgaCATTGCAACTGTAAAAGTGTATTTAGATATTTTACAAAACTGTACAATTAAACT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221777 True 2960 lncRNA 0.43 1 5650699 5653658

Neighbor

gene id symbol gene type direction distance location
LOC120575590 sap30l,sp30l,LOC105890504 coding downstream 142411 5490062 ~ 5508288 (-)
serpinf1 serpinf1 coding downstream 335141 5295961 ~ 5315558 (-)
LOC120544303 NA coding downstream 461672 5186003 ~ 5189027 (-)
LOC120544302 LOC104931089,LOC104947899 coding downstream 476432 5173314 ~ 5174267 (-)
LOC120544301 LOC104947899,LOC104931089 coding downstream 480675 5169071 ~ 5170024 (-)
LOC120575636 LOC100711410,LOC102305690,LOC102207837,LOC103358844,LOC106960860,LOC102785365 coding upstream 4749 5658407 ~ 5814142 (-)
LOC120575637 NA coding upstream 145380 5799038 ~ 5803339 (-)
LOC120575643 LOC103353475 coding upstream 418560 6072218 ~ 6181961 (-)
LOC120544211 NA coding upstream 633248 6286906 ~ 6290324 (-)
gemin5 LOC102786240 coding upstream 675189 6328847 ~ 6363792 (-)
G163585 NA non-coding downstream 16636 5633351 ~ 5634063 (-)
G163561 NA non-coding downstream 212886 5434433 ~ 5437813 (-)
G163523 NA non-coding downstream 246647 5343653 ~ 5404052 (-)
G163625 NA non-coding upstream 29495 5683153 ~ 5683413 (-)
G163643 NA non-coding upstream 508926 6162584 ~ 6163275 (-)
G163689 NA non-coding upstream 601726 6255384 ~ 6255652 (-)
G163688 NA non-coding upstream 629711 6283369 ~ 6290858 (-)
G163694 NA non-coding upstream 648026 6301684 ~ 6301977 (-)
LOC120544555 siah2,LOC101471392,LOC102786130 other downstream 828827 4281773 ~ 4821872 (-)
G163315 NA other downstream 830200 4334843 ~ 4820499 (-)
LOC120544563 NA other downstream 900269 4735214 ~ 4750430 (-)
LOC120544552 LOC104935312,LOC100692486,LOC101485649,LOC106922321,LOC102232317,LOC102292363 other downstream 956083 4606736 ~ 4694616 (-)
LOC120544568 LOC104932967,LOC104935308 other downstream 1157348 4491005 ~ 4493351 (-)
G163767 NA other upstream 1603480 7257138 ~ 7286265 (-)
wwc1 wwc1 other upstream 1677256 7330914 ~ 7398125 (-)
LOC120543652 LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849 other upstream 2207795 7861453 ~ 7887088 (-)
G164022 kctd7,LOC102776841 other upstream 2693170 8346828 ~ 8352505 (-)
rabgef1 rabgef1,LOC102778478 other upstream 2714837 8368495 ~ 8380575 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016092 CU633991.2 non-coding NC_007113.7 CM002886.2 3412076 ~ 3416207 (-)