LOC120543652 (LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849)


Basic Information

Item Value
gene id LOC120543652
gene name LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 7861453 ~ 7887088 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU222170
GTCTGGTAAACACCCTGAGGATTCTGACCGACTTGGGATTGGAATGGGAATCGGTCGACTGCGCCATCGTACGTCTGGTCTGCGACACCATCTCCTCGCGCTCCGCCGATCTCTGTGCTGCAGCCCTGGCAACCATCACCAACCGTATCCGTACCAACCGCGGGCTGAGCCATCTGAAGACCACCGTGGGGGTGGACGGGACAGTCTACAGAAAACACCCCAAGTTCAGCGAGAAGCTCCGGGCGACGGTGCGCCGCCTCGCCCCCGAGTGTGACATCACCTTCCTGGTCTCGGAGGACGGCAGCGGGAAGGGCGCTGCCATGGTGACGGCCGTGGCGCTGCGGCTGGCTCGCCAGTCCCGGCTGTTAGAGGACAGTGACGGTGAGgtcagggaggaagaggaagatgaaTAAAGAGTGGAGAGAGGATGCAGATGATACCCAACATGTCTTCTGTTTTTAAAGCTCGCAGTGTTCTCATTCAGCACATTttgttaatattatattatttaaagctatagtgcgtagtttctgtcgccccatgaggaattctaagcaatgacaacaacactgtaggcgcgtccacatgatacaagccttctatGACCGCACAccgccccctcccccctccacacagttgctagtagccaaggaggacatggaggattaaaaaaagcatgatggactcttcagaagaggtcattatcttcactcgagtttctgcgcgggaaagtcgccggacgccacaatatTCTGAACATAACcatactgagaaacacagagagagttgtgtggagctgatagtcttaattagctttgtagcaactcatttggcaatggcttgaatgtaacgggtgttcattaatatcaaaaagttacgcactaaagctttaatattatatttaagTTAGTTTTGCTCCTCTAAAACAGTGAGTCAAACTTCAGCTAGTGTTTTCATTTTACTGTTACAAACTCATTTTAATGGCATTTAAACATTTAGGGCCCTATATCTCACACCCAGCGCAGCACACAGcccaacgcaagtgtcttttctagtttaagaccgacgcagttgtcaatttcccgtccagcacccACGTCGATTAAATAGCAAAtacacctgcgcccatctgtgcgcccatgggcgtgctggtcttacagggaggtgtgttcaggtgcattttgggcgtattgctatcttgaggcagcgggaagtgatcgcgccattgaccaacaaaaacctggtctaaagtcaatagcgcagcatctcattgttattttaacagagcatcagtaaaatgctcctaggctcgtgcacagcgcgcgcacactatgcttgttacacacacagggacacacagcagcacacaaacatgcaaaagatggcaaataaaaaatattacggtgcaaatcctccatcttaatagcaatgctccaaggtacaacgcgcctggcttttaaagggaatgggagatgatctctgattggtttattgcatgttacgtccaaaacacacctatgaattaatgaagacactaagtacaactcttttgaaccatgcgcctggaccctttttttccgccttcaaaccagcaaaagtggatttggacacgctcTAAACGTACCTGCGACATGCGCTTCACGCTGtgtgcttagatcgttaaaatagggccctaaaggTTCCCTGTGGCGTTTTAGATCTCTAAGAGCCCTACGGTGCTGTTTTTTCAAAAAGTCCAAATTTGGGCAACGGGTGTAGGGGAGCTAAAGCTGAGGTGGAATGAGGAAGGAGAAACCACATTGGCTGGATGTGTCATTGGTCATTTTCACATAGTCTTCATACCTCAACTATACTGAACAAATCTAAACTATACTTggatttttacattatttttgtaTAAATGAAATGAAGTACCTTGATTTCTTTGGTATTTAATATACTGGATTACcaatttttaaataaagagCTATTTTATGGGAGA
>XM_039776793.1
CGCGCCTGTCTGCTCCGAAAACAAACGCACAGCTCGCCTCTTCACGTTGCAACATAATTGCTGCAGATGAAGTGTGTGTAAACGCAAACTGACGTCTCACTCTTTTCTCATTCATAAAGGCGGTGGACTCATGTCAGTCTGAGCAGCGCAGAACAACGAAATTTGGAACAGCATATCTACTCCATTTCACCCTGAGACCCTCTGCTTTCGTTGTAAAGGACCACCAGAGGGCCACTGAACCCCAGATTTGAAACCATAAGCAGCACAGAGGCAAACACCAGGAACAGCACACAGATTTCCAAGAAGGCCAAAATGAACGGTGATACCCCAGCCCTGCACCTGGATGGCATCCCTCCAGACACGCTCCGTAAGgtgcaGCCGTACCTGGAGCCATTCCAGCTGTCTCAGGCGAAGCTGCTGGAGGTGTCTGCCCGGCTGAACAAGGATATGGTTCTAGGTTTGGGGAAAACCACTCACCACAGGGCGGCCGTCAAGATGCTGCCCACCTTCGTCAGGGCCACACCAGACGGGACGGAGAAAGGTGACTTCTTGGCGTTGGATCTCGGTGGAACAAACTTCCGAGTGCTTCACGTCCgtgtggtggaggaggagcagaAAGTGCTGAAGATGGACAGCCAGATCTGTGccatcccgaaggaaattatGCTGGGAACTGGAGAACAGTTGTTCGACCACATCGCCGCCTGTCTCGGTGATTTCCTCGTCTCTCAGAATCTGAAGGGACAAACTCTTCCTCTGGGCTTCACCTTCTCCTTCCCCTGCGAACAAAAAGAAATAGACAAGAGCATCCTGATCCGCTGGACCAAAGGCTTCAACTGCTCCGGAGTGGAGGGCAAAGATGTGGTGAAGTTACTGAAAGAGGCCATTCACAGGAGAGGGgactATGATATAGGCTCAGTTGCCATGGTGAACGACACAGTGGGCACGATGATGAGCTGCGGCTACAAAGACCAGAGCTGCGAGATCGGCATGATCATCGGGACGGGAACCAACGCCTGCTACATGGAGGAGATGAGGAACGTGAAGCGCGTGGAGGGCGAGGACGGGCGGATGTGCATCAACACGGAGTGGGGGGGCTTCGGAGACGACGGCTCCCTGAAAGACATCCAGACGGAGTTTGACGTGGTGGTGGACAAGACGTCTATCAACCCCGGCGTCCACATCTTTGAGAAGATGATCAGCGGCATGTATCTGGGAGAAATCGTTCGGCTGCTGCTGGTGAGGCTGGCGAAGGACAAGCTGCTGTTTAAGGGACGGACATCGGAGGCGCTGCGGACCCCGTATACATTTGAGACCAAGTTCATCTCTGAGATTGAGGATCTGGTAAACACCCTGAGGATTCTGACCGACTTGGGATTGGAATGGGAATCGGTCGACTGCGCCATCGTACGTCTGGTCTGCGACACCATCTCCTCGCGCTCCGCCGATCTCTGTGCTGCAGCCCTGGCAACCATCACCAACCGTATCCGTACCAACCGCGGGCTGAGCCATCTGAAGACCACCGTGGGGGTGGACGGGACAGTCTACAGAAAACACCCCAAGTTCAGCGAGAAGCTCCGGGCGACGGTGCGCCGCCTCGCCCCCGAGTGTGACATCACCTTCCTGGTCTCGGAGGACGGCAGCGGGAAGGGCGCTGCCATGGTGACGGCCGTGGCGCTGCGGCTGGCTCGCCAGTCCCGGCTGTTAGAGGACAGTGACGGTGAGgtcagggaggaagaggaagatgaaTAAAGAGTGGAGAGAGGATGCAGATGATACCCAACATGTCTTCTGTTTTTAAAGCTCGCAGTGTTCTCATTCAGCACATTttgttaatattatattatttaaagctatagtgcgtagtttctgtcgccccatgaggaattctaagcaatgacaacaacactgtaggcgcgtccacat

Function

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0006096 glycolytic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004396 hexokinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222170 True 1981 lncRNA 0.47 2 7861453 7866111
XM_039776793.1 False 1926 mRNA 0.55 12 7862847 7887088

Neighbor

gene id symbol gene type direction distance location
zgc:77151 NA coding downstream 14650 7802217 ~ 7846803 (-)
dbn1 dbn1 coding downstream 78660 7626700 ~ 7782793 (-)
nop16 NA coding downstream 390366 7458764 ~ 7471087 (-)
rars1 rars coding downstream 539666 7290596 ~ 7321787 (-)
LOC120575570 ddc,LOC102780833 coding downstream 1465126 6381059 ~ 6396327 (-)
LOC120543650 NA coding upstream 20332 7907420 ~ 7948944 (-)
uimc1 NA coding upstream 66929 7954017 ~ 7980904 (-)
trnad-guc_16 NA coding upstream 94912 7982000 ~ 7982071 (-)
fgfr4 fgfr4,LOC103363329 coding upstream 187859 8074947 ~ 8096073 (-)
rab24 rab24 coding upstream 372699 8259787 ~ 8278089 (-)
G163896 NA non-coding downstream 59253 7799900 ~ 7802200 (-)
G163894 NA non-coding downstream 64941 7795319 ~ 7796512 (-)
LOC120544008 NA non-coding downstream 409957 7441243 ~ 7451496 (-)
G163865 NA non-coding downstream 443231 7417210 ~ 7418222 (-)
G163862 NA non-coding downstream 489720 7371265 ~ 7371733 (-)
LOC120543653 NA non-coding upstream 95980 7983068 ~ 7984196 (-)
G163956 NA non-coding upstream 177688 8064776 ~ 8065199 (-)
G163958 NA non-coding upstream 265993 8153081 ~ 8153347 (-)
G164006 pgrmc1 non-coding upstream 395290 8282378 ~ 8287662 (-)
G164017 kctd7,LOC102776841 non-coding upstream 448508 8335596 ~ 8341644 (-)
wwc1 wwc1 other downstream 463328 7330914 ~ 7398125 (-)
G163767 NA other downstream 575188 7257138 ~ 7286265 (-)
LOC120544563 NA other downstream 3111023 4735214 ~ 4750430 (-)
LOC120544552 LOC104935312,LOC100692486,LOC101485649,LOC106922321,LOC102232317,LOC102292363 other downstream 3166837 4606736 ~ 4694616 (-)
LOC120544568 LOC104932967,LOC104935308 other downstream 3368102 4491005 ~ 4493351 (-)
G164022 kctd7,LOC102776841 other upstream 459740 8346828 ~ 8352505 (-)
rabgef1 rabgef1,LOC102778478 other upstream 481407 8368495 ~ 8380575 (-)
smg8 smg8,LOC102779993 other upstream 564489 8451577 ~ 8465799 (-)
trim37 trim37,LOC102780947 other upstream 625086 8512174 ~ 8543503 (-)
G164179 NA other upstream 750626 8637714 ~ 8639161 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G230883 NA non-coding CI01000054 null 2105736 ~ 2108602 (-)
eurasian perch (Perca fluviatilis) G192942 NA non-coding NC_053130.1 CM020927.1 10959214 ~ 10962849 (+)
mexican tetra (Astyanax mexicanus) G193110 NA non-coding NC_035918.1 CM008321.1 27138083 ~ 27139236 (-)