Gene
RNA
| Item | Value |
|---|---|
| gene id | G164031 |
| gene name | ttc3,LOC103371649 |
| gene type | non-coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053127.1 |
| NCBI id | CM020924.1 |
| chromosome length | 37730433 |
| location | 8411409 ~ 8412657 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| ttc3 | Predicted to enable metal ion binding activity and transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm. Orthologous to human TTC3 (tetratricopeptide repeat domain 3). |
| description |
|---|
| PREDICTED: E3 ubiquitin-protein ligase TTC3-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU222312 | True | 1225 | lncRNA | 0.47 | 2 | 8411409 | 8412657 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:dkey-183i3.6 | NA | coding | downstream | 78339 | 8315778 ~ 8333070 (-) |
| trnal-caa_12 | NA | coding | downstream | 118891 | 8292407 ~ 8292518 (-) |
| rab24 | rab24 | coding | downstream | 133320 | 8259787 ~ 8278089 (-) |
| fgfr4 | fgfr4,LOC103363329 | coding | downstream | 315336 | 8074947 ~ 8096073 (-) |
| trnad-guc_16 | NA | coding | downstream | 429338 | 7982000 ~ 7982071 (-) |
| vps26c | dscr3 | coding | upstream | 15759 | 8428416 ~ 8441204 (-) |
| kcnj15 | kcnj15 | coding | upstream | 32461 | 8445118 ~ 8449262 (-) |
| slc37a2 | slc37a2 | coding | upstream | 165413 | 8578070 ~ 8594221 (-) |
| ccdc15 | LOC104960196 | coding | upstream | 182830 | 8595487 ~ 8603766 (-) |
| psmg1 | psmg1,LOC102782103 | coding | upstream | 192039 | 8604696 ~ 8614450 (-) |
| G164042 | NA | non-coding | downstream | 9065 | 8400979 ~ 8402344 (-) |
| G164038 | NA | non-coding | downstream | 20664 | 8388362 ~ 8390745 (-) |
| G164027 | NA | non-coding | downstream | 43321 | 8366403 ~ 8368088 (-) |
| G164021 | NA | non-coding | downstream | 67763 | 8343399 ~ 8343646 (-) |
| G164017 | kctd7,LOC102776841 | non-coding | downstream | 69765 | 8335596 ~ 8341644 (-) |
| G164085 | NA | non-coding | upstream | 49821 | 8462478 ~ 8462795 (-) |
| G164079 | NA | non-coding | upstream | 87108 | 8499765 ~ 8510059 (-) |
| G164175 | LOC101484903,LOC104947545,LOC103360243 | non-coding | upstream | 215140 | 8627797 ~ 8630886 (-) |
| G164188 | NA | non-coding | upstream | 308453 | 8721110 ~ 8724296 (-) |
| G164193 | NA | non-coding | upstream | 322722 | 8735379 ~ 8737503 (-) |
| rabgef1 | rabgef1,LOC102778478 | other | downstream | 30834 | 8368495 ~ 8380575 (-) |
| G164022 | kctd7,LOC102776841 | other | downstream | 58904 | 8346828 ~ 8352505 (-) |
| LOC120543652 | LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849 | other | downstream | 524321 | 7861453 ~ 7887088 (-) |
| wwc1 | wwc1 | other | downstream | 1013284 | 7330914 ~ 7398125 (-) |
| G163767 | NA | other | downstream | 1125144 | 7257138 ~ 7286265 (-) |
| smg8 | smg8,LOC102779993 | other | upstream | 38920 | 8451577 ~ 8465799 (-) |
| trim37 | trim37,LOC102780947 | other | upstream | 99517 | 8512174 ~ 8543503 (-) |
| G164179 | NA | other | upstream | 225057 | 8637714 ~ 8639161 (-) |
| plekhb1 | LOC107387206,LOC100711952 | other | upstream | 1696499 | 10109156 ~ 10127607 (-) |
| LOC120543909 | NA | other | upstream | 2050554 | 10463211 ~ 10489164 (-) |
