rabgef1 (rabgef1,LOC102778478)


Basic Information

Item Value
gene id rabgef1
gene name rabgef1,LOC102778478
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 8368495 ~ 8380575 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU222314
CAGAAGCGAAGAGGACTGTTTTAGTAGCCTACTCCTGATCGGTGAGAACATATTATAGCATCATGAGTCAACGGACGGAGCGCCGGGGGGGGATACACGTGGACCAGTCGGACCTGTTGTGCAATAAGGGATGCGGTTATTATGGCAACGCGGCATGGCAGGGCCTGTGCTCAAAGTGCTGGAGGGAGGAGTACCAGCGGGTACGACAGAAACAGATCCAGGACGACTGGGCCTTGGCAGAAAAGTTGCAGCGGGAGGAGGAGGCTGCATATGCCAGTAGTCAGGGATCACAGACACAGTCCACAGCAGCACAACCACAGCCGGGGGGGCGCGCCTCTCTGGGACCCTTCTCCAAGTTTGAGGAGAAGAAGACCAACGAGAAGACACGGAAAGTGACCACAGTTAAGAAGTTCTTCAGCCCTTCGTCACGCACTGCTAACAAGAAAGAAAACCAAGAGGGCAAGTCACCCAGTCCGTCAATTAGCCGCCATGCCAGCTTCGAGACAGACCAAGTGTCCAAGGACTTTGTGGACTTCTTGAAAAACCTCCAGAAGCCCGGCCGGGAAATCCATAAGCAGTGCCGAGCCTTCATTGTCAACATGTCAAACAAGAAGGATCTGGGTGCTGACGAGCTGTCGGAGTGCGTTCAGGATTTCTACCAAAACTTGTCCGACCGCTTGATGGGTCACTTTAAAGG
>XM_039777953.1
CTCATGGTTCCGTCATCTCACTCTCATAACAGAAGCGAAGAGGACTGTTTTAGTAGCCTACTCCTGATCGGTGAGAACATATTATAGCATCATGAGTCAACGGACGGAGCGCCGGGGGGGGATACACGTGGACCAGTCGGACCTGTTGTGCAATAAGGGATGCGGTTATTATGGCAACGCGGCATGGCAGGGCCTGTGCTCAAAGTGCTGGAGGGAGGAGTACCAGCGGGTACGACAGAAACAGATCCAGGACGACTGGGCCTTGGCAGAAAAGTTGCAGCGGGAGGAGGAGGCTGCATATGCCAGTAGTCAGGGATCACAGACACAGTCCACAGCAGCACAACCACAGCCGGGGGGGCGCGCCTCTCTGGGACCCTTCTCCAAGTTTGAGGAGAAGAAGACCAACGAGAAGACACGGAAAGTGACCACAGTTAAGAAGTTCTTCAGCCCTTCGTCACGCACTGCTAACAAGAAAGAAAACCAAGAGGGCAAGTCACCCAGTCCGTCAATTAGCCGCCATGCCAGCTTCGAGACAGACCAAGTGTCCAAGGACTTTGTGGACTTCTTGAAAAACCTCCAGAAGCCCGGCCGGGAAATCCATAAGCAGTGCCGAGCCTTCATTGTCAACATGTCAAACAAGAAGGATCTGGGTGCTGACGAGCTGTCGGAGTGCGTTCAGGATTTCTACCAAAACTTGTCCGACCGCTTGATGGGTCACTTTAAAGGTTGGTTTAGAGAACTTTCTCACCCGGCGTTACACTGGGTGACCATCCAGATGCTGTGCGTGTCTATGGATGAAGAAATCCCTGAAGTCTCTGAGAATGTGGTCAAAGCAATAACAGATATCATTGAGATGGACTCGAAGAGGGTTCCTCGGGACAAACTTGGGTGCATCACGCACTGCAGTAAACAGATCTTCAGTGCCATCAGGACCACCAAGAACGAGCCGGCCTCAGCTGACGACTTTCTCCCCGCGCTCATTTACATCGTGCTCAAAGCTAACCCTCCTCGACTTCAGTCCAACATCCAGTACATCACCCGCTTCTGTAACCCCAGCAGGCTGATGAGCGGAGAGGATGGATACTACTTCACCAACCTGtgctgtGCAGTGGCCTTTATCGAAAAGTTGGACGCCCAGTCTCTCAACCTTTCCCCAGAGGAATTTGAGCGCTACATGTCAGGCCAAGCCTCGCCGCGATGCAACAGCTCGGAGGGCGACTGGGCCCACGCCGACCAGGCACCAACCGCCACCAACCCGGTCCTGGCTCAGCTCAATCACAACCTGGAGGTGCTGTCGGGCCTCAGCAGCCGGCAGGAGTCGCTGATGGAGGCCGCTCGCAGTCTGCAGGCCGACCTCCTCTCCTGGCCCCAGAGCGTGCAGCGGGAGGTCAACGGCATCCTGGAAAAATACCCGCTAGAGGTTCTGTCTCGCACCGTTTCCGCCATCGATGCCAACAACGTGGACAATGACAACCTGCCACCGCCCCTCACGCCCCAGGTGTTTGCTGGGTAGTGGAGTCTACAAAGGGAGGGAAGACATTTCACAAACACCAACggtactcctgctttgaaaagGCAGCTTTTTGAGTTTGATGGTAACATCCCATACGCACTAATCTGCTGAATACTTTGGAGCTTCTTCTGCACTTTAAACTGTGTGAACTTATTGTCAGTTAGCAAGCTAGTTAGCTTGGAGAGCTTATTTTTCCTGTCTTTAGTAACTATTTATTAAACGAAGCAATGCACAGGCCTGGGAGCACGGCAGTTTGCTAGCACGTTAGCAGCTACAATGCTACACATACACTTTGCCGCTTTCTGGGGTGACCGAGTCTTTATGGTTATCGGATCGTCTGTAAAGCTCTCcgctgccactgctgctgtttcatcACAGTTGCTTATTGACCAGTTTCTGGTTTGTCTGAAAAAATAATAGCAAGTATAATCTGCTGCATGTTGGTGTGTCTGTTTAGGGCCAGTTGGACTTTTTTTTGAAAccttttaatcatttttatatTACCCCcctataatttttatttttttccctttttttccattttcatttattgtccttttatttaagtctttttttccccccttttttaatatttttttctattttcatttattttcctttttaattattttttccctttttaatttttttctattgaagctttttcccttctttttttttcattttcattttttccttttttactcCAATACAATTTTGTCTGACTTTTATCGCAACGCTGTCCGATTTCTTGCTGTGTGTAATATGTTGTGTAGTATTTTTCTGCTGTAACACATTcaggagaaacacacagaacCACACTGGAACATATTTCTCATCATCGTCGAGAGgcctttcattttctattttcataAACACACTGTTTTAACGTTGAACTGTGTTTTTAGAATTCACTGTATTTTGGCAGGCTTTTGCATTTTCACCTATACAATGAATGAAACtattaataatgtattttaagtatttaagatttattttgtCATTGTGCGATGTACTACTGTATAATATCGGGTGTAAAAACATGCTGGTGGTGTCTGATTGCCTGTTGAAACACTGCTGCCCAAcggctgcttttgtttttgtgttgattCATTAGCTTGAAAATCTTTTTAGTATTTTTATTCAGTGACTAGCATTGAATTAAAAGCACATAAAAGCCTGTAAAA

Function

symbol description
rabgef1 Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human RABGEF1 (RAB guanine nucleotide exchange factor 1).

NR:

description
PREDICTED: rab5 GDP/GTP exchange factor

GO: NA

KEGG:

id description
K20131 RABGEF1; Rab5 GDP/GTP exchange factor

RNA

RNA id representative length rna type GC content exon number start site end site
TU222314 False 697 TUCP 0.54 5 8375892 8380546
XM_039777953.1 True 2700 mRNA 0.46 8 8368495 8380575

Neighbor

gene id symbol gene type direction distance location
si:dkey-183i3.6 NA coding downstream 35425 8315778 ~ 8333070 (-)
trnal-caa_12 NA coding downstream 75977 8292407 ~ 8292518 (-)
rab24 rab24 coding downstream 90406 8259787 ~ 8278089 (-)
fgfr4 fgfr4,LOC103363329 coding downstream 272422 8074947 ~ 8096073 (-)
trnad-guc_16 NA coding downstream 386424 7982000 ~ 7982071 (-)
vps26c dscr3 coding upstream 47841 8428416 ~ 8441204 (-)
kcnj15 kcnj15 coding upstream 64543 8445118 ~ 8449262 (-)
slc37a2 slc37a2 coding upstream 197495 8578070 ~ 8594221 (-)
ccdc15 LOC104960196 coding upstream 214912 8595487 ~ 8603766 (-)
psmg1 psmg1,LOC102782103 coding upstream 224121 8604696 ~ 8614450 (-)
G164027 NA non-coding downstream 407 8366403 ~ 8368088 (-)
G164021 NA non-coding downstream 24849 8343399 ~ 8343646 (-)
G164017 kctd7,LOC102776841 non-coding downstream 26851 8335596 ~ 8341644 (-)
G164006 pgrmc1 non-coding downstream 80833 8282378 ~ 8287662 (-)
G163958 NA non-coding downstream 215148 8153081 ~ 8153347 (-)
G164038 NA non-coding upstream 7787 8388362 ~ 8390745 (-)
G164042 NA non-coding upstream 20404 8400979 ~ 8402344 (-)
G164031 ttc3,LOC103371649 non-coding upstream 30834 8411409 ~ 8412657 (-)
G164085 NA non-coding upstream 81903 8462478 ~ 8462795 (-)
G164079 NA non-coding upstream 119190 8499765 ~ 8510059 (-)
G164022 kctd7,LOC102776841 other downstream 15990 8346828 ~ 8352505 (-)
LOC120543652 LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849 other downstream 481407 7861453 ~ 7887088 (-)
wwc1 wwc1 other downstream 970370 7330914 ~ 7398125 (-)
G163767 NA other downstream 1082230 7257138 ~ 7286265 (-)
LOC120544563 NA other downstream 3618065 4735214 ~ 4750430 (-)
smg8 smg8,LOC102779993 other upstream 71002 8451577 ~ 8465799 (-)
trim37 trim37,LOC102780947 other upstream 131599 8512174 ~ 8543503 (-)
G164179 NA other upstream 257139 8637714 ~ 8639161 (-)
plekhb1 LOC107387206,LOC100711952 other upstream 1728581 10109156 ~ 10127607 (-)
LOC120543909 NA other upstream 2082636 10463211 ~ 10489164 (-)

Expression


Co-expression Network