smg8 (smg8,LOC102779993)


Basic Information

Item Value
gene id smg8
gene name smg8,LOC102779993
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 8451577 ~ 8465799 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU222374
cacacacacacacacacacacacacacacaaggctacGTGTGCCAGAACTGTGAATATGAGTCTAATTAGTTGATACAGATGTATGTCATCagaaaatgtaggctacataagaGCATTAGTGTGTTAAAACATCACATCtgttttgttaaaggtcccatggtattaaaatttcactttatggcacatcctaaggaaagctcattgtgggactggctctagtggctgtagttctgcaccaaggctgaatttcaggaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagatttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagcatccaaagagcaccataatgggacctttaagaagttAAACATTTGAGCGAGTTATCTGCAGCATTCCATTCAGTTATCACGGATCTGTGC
>XM_039826353.1
tttaagaagttAAACATTTGAGCGAGTTATCTGCAGCATTCCATTCAGTTATCACGGATCTGTGCATTCCAGAGAACGTTCGATTTCAACGTTCAAAGTAAAGTGGTCGTTGCACTAATAGTGTTCTCTGCCAGCGTTGTTGTTTTAATTGAAGGAATGGATTTTCCAGATTCTCTTGGcatgattgtttttattttcagttctggtttgaattttaaatgaaaatcattATTCACAATTAAGCAGTTGTGTTCTTATTTTTGATAATACAGTGTGACAATTTACCCGGCGCAATATTCAACAATCCACAACTCCATAATGAGGTAAGTTATGAAGATgtaattaatacaaaatatgagCCCAAGAATTGCTTCTTTCATTTGGTATGACATTTATACCATTGTGACGGTGTGAAAAGAGTGATTGACAACATACCCCGCTCTGATATAATTCTTCCACTAATGGGTGAAACAGTAAAACAAAAGGGGAACTGCAACGCGTATGTTGTATCTACTCGGACGTTTTAGTTTACGAAACCGGAAATGCGTGCGTCGTTGTTTTTCTTCCCCCGATTTTCAAGATGAAGGAAGTAAACATGTCTTTCCCTGTGAGTATGGGGGCTCTGCTTAAGGCAGACCTCCAGGAGGACGCTGCTAGCCGGGACGAGGGCTTGTGTGTTGTCGGTATTTTCGGTAAAAGCAACATGCAGCCCGGACCGCCGAAGGAGTCTATTATCAACAATTTGGCGGACAAACACATCTTCTCGCTGTTCGGCGGACCGGAGGACGGCGGCACCGCGGACAGCCACATCCAGGCTTTCTACAGCCAGGAGAGCCGGGTGCTGTACctgctgctctcctccgtctgcGACAGCCGGCAGCTGCTGCGGGCCTGCGAGTCTCTGAGCGCCGCCACCGGCCACTCCGACGCCCACGACTTCTGGAAAGGCCTGGACCGACAGCACTGCCTCCATCTGCTCTACATGTTCTCCGTGTGCCACGTCCTCCTGCTCGTCCACCCCAACCAGACCTTCGATGTGACCTACGACCGGCTCTTCAGAGCCCTGGACGCCCTGCGACAGAAGGTGCTGCCTCTGATCCGAGCTGCCATCAAAGACTGTCCGGTGTCCAAAGAGTGGAAGGTGAACTGTCGGCCCTGCCCTCCACGCCTGCTCTTCGTCTTCCAGATGAACGGCTCTCTGAAGGTCTCTGCAAACGGTTCAGAGTCTGGGGGAAACCCAGACAAGCCCAAAAAGCACTCTCCCAGGAGGAGGTTGCAGCATGCCCTGGAGGACCAAATTTATCGGATCTTCCGTAAAAGCAGAGTCCTGACCAACCAGAGCAGCAACTGCTTGTTTACTGTGCCCGCCAACCAAGCGTTTGTGTACGTGATACCGGCAGTAGATGAGGACCCAGTGGGTGCCCTGCTTGGTCAGCTGCGGTCCAACTGCATCTTGTGTGAACAAGACACCGTCACGGTGGTGTCAGGGCCGAGGCGCTATCAGCAGATGCGACGTTCAGTTCGGCAGTCCAGCTTCGGCGGAGATCCAGGCAGCATGTCGATGGGCGGTCAGCTGGTGGACTGCAGCCTGAAGGAATTCCTCTGGCAGCACGTGGAGCTGGTGCTCACCAAGAAAGGCTTTGACGACAGCGTCGGCCGCAACCCACAACCTTCCCACTTTGAGCTGCCGACCTACTCCAAATGGGTCCAGGTCGCCTCCAGGCTCCACCAAGTCCTGATTAGCAACACGGAAGAAGAATTAGCCGAGCTAGCCACGAAAGTGCAAGCCCAGCTGAAGGttttggaggcttttctcgATGCTGACACAAAGTTCTCTGAGAACAGGTGCCAGAAAGCTCTGCCACTGGCTCACAGCGCTTACCAGTCCAATCTTCCCCATAACTACACCACTACGGTGCACAAAAACCAGCTGGCGCAGGCTCTGCGAGTGTACAGCCAGCATGCCCGAGGAGTCGCTTTCCAGCGCTATGCACTGCAGCTTCATGAGGACTGCTACAAGTTCTGGAGCAACGGCCACCAGCTGTGTGAGGAGCGAAGCCTGACTGACCAACACTGTGTTCACAAGTTCCACCTTCTTCCTCAGCCAGGAGAGAAGCCAGACCTGGATCGCAATCCACCAATCATGAACcacaacagcagggggcgctccACCAGCTCCTGTAACTGCGGCAGGAAACAGGCTCCTCGTGAGGATCCGTTTGACATCCAGGCTGCCAATTATGACTTCTACCAGATACTGGAGGAGAAATGCTGCGGGAAGCTGGAGAGGATTGAGTTTCCGGTGTTCCAGCCCAGCACTCCTGACCCAGCTCCGGCCTGCAACCAAGCTCAGCGACTCCCGAGTGAGGCCTCAGGGTCTGGTGAGGCGGAGAGGCTGAAGGAGCCAAGCACTGCTCAGAGCCACACACCTGGAGACCCCAGCCTCAGCCTGGCTCTCAGTCTAGGCCAGTCCACGGACAGCCTCGGGCCCTACGCGGACGGAGATGGCACCGAAACCCAAGTCCAGCAAAAGAGGCCAAGCCTTGTTGACCGCCAGCCCTCCACTGTGGAGTATCTCCCGGGTATGATGCACTCTGGGTGCCCCAAGGGCCTGCTACCCAAGTTCTCCAGCTGGTCGCTAGTCAAACTGGGCCCAGCCAAGTCATACAACTGCCACACCGGTCTGGAACAGCCGGGCTTCCTACCCGGCTCCTCCTTCCTCTTGCCGTGGGACTTGGTGATCCGCTCTCGGTCGGAGGAGGACACCGGACTGACGGAGCCTTTGGATGGAGGCACCTCCTCGTGGCCAGCCCCAAACAAGACCCTGGTGGGAAAGCGAGGGAGCACCGGAGGGCTCGGTAGGAGTCGCAGGAGGGATGACATGGCTCGGATCTTCGTGGGGTTTGAGTATGAAGACAGCCGAGGAAGACGCTTCATCAGCTGCGGGCCGGATAAGATAGTGAAGGTGCTGGGGCCAGGGGGCGCCAAAGAACCGGCCACCAGGGTGCTAAACACCGACATGCCGCTGAACATCCAGTCCCCTTCACAGGGCCGCGGCCTGAAGCCTCACTTCGCCCAGCTGGCtcgcctttttattgtggtgccGGACGCCCCACTGGAGGTTACCCTCAACCCACAGGTACTGCCCAGTCCTCCTCCCTGCCCAGTTTTCCACCCAGAGAAGACAGATATAGTGTTGCCACCTGATGGTCTTTGGGTTCTGCGGTTCCCTTATTCCTACGCAACAGATCGTGGCCCCTGTTACCCCCCCAAAGAGAACCAACCACTCAACAACTACAAGGTGCTGCGAGGCATCCTGAAGGCCACGACTGCTAACCCTCCACCACAGTAAACTTAAACCTTTCACAGTATGAaggctttattatttattcaggCTTCCTGATGTAGgctgagaaatgttttttttttgtcagtccGTGACCCCCAGACCTCATCAGGTCAAAATCAGGTTGGATTTCCTGTAAAAGAACTGTTGATATTCACAGTTGCTACACATTAAATCCCATTGATTTTGATGATCTCTAAAAGTTTTGCTGCATAATTCAAACAAATTTATTTTCATGCTCCCAGAAGAAGAACACATTCTGCACTGCCATCCAAActttaaaccccccccccccatttctgTAACTTTCCGTGGCCAGCTTACGTCATGGTTTTGGAAAAGCTCTATTTACCCCATACAAACTCAAACACCAAGCCAACGTTTGAAGGTGTACAGGTTTTGGAAAAGCATAATGTGGACGTACAGTAGCAAATAACAAAGGTCAGCAGCATTGAGCTAGAGTAGCCAATAAAACAGAGGCGAAAGTCGAGTGTCAGTAATTAGGCTAAACTAATGTGTATTCTGCACCACTTTACTTTAAGTCCACCTATTTAGCATTTATTAGCAGtatataaacatttaataaacggtctataacacactataatgtagttgtatgcagatataattatttattaatgtatttgtaaACAACCTCTTGTGGGCTCACATAAGTGGAAGCTGCTGTACAAACATAAGTTATGACAATATAGTAAAACGTGTAATATGAAGTATCTTCATAGGAGAAGTTATAATTGCTGACGAATATTAATAACCTCATATCTGCGTACAACTACATTGTAGTGTGATATAAACCTTTTAATTAAAGGTTTGTGCGCTGCTTGTAAGGACAAACTAGGGAAACCTCCAGTAAAGTGTTACCTGTATTCTGCATCATGTGTAGTATGGTATCCCAACACAAGTATCCTACTACTATTACAATGATTACTGTACATGTTCATGTtttctataaataaaaataattgtttgccattttt
>XM_039826354.1
ATTGAATGTACCAAATGTGTTTAAATACAAAACCTAAAAAATCTGTTCTAATTTTTCCACGGTTTGTCATCAACAGTAAAcgggaatgtgtgtgtctgttagcaCAGAATTTGAGGGGATTGGGGGGGTTCGCTGTGCAAGATGACCTTATATTCACCAGCCAATCAAAACCTGGCAAAGACATTGTGACAAAGACAATATGAAGGTGTAGTGTGAATTAATAGGGATATGGATGTGGTTGCTCCAACAGGTCTGCTCTCCATCTTGGTGAAAACACCTGACAGCACTACTGGCTTCAATGTGATCCATCCTGCCACAGACATATGCTCTCTATCACTGCTGGAGTGCATCCTGACCTTCTGAGACGTTGTGACAATTTACCCGGCGCAATATTCAACAATCCACAACTCCATAATGAGGTAAGTTATGAAGATgtaattaatacaaaatatgagCCCAAGAATTGCTTCTTTCATTTGGTATGACATTTATACCATTGTGACGGTGTGAAAAGAGTGATTGACAACATACCCCGCTCTGATATAATTCTTCCACTAATGGGTGAAACAGTAAAACAAAAGGGGAACTGCAACGCGTATGTTGTATCTACTCGGACGTTTTAGTTTACGAAACCGGAAATGCGTGCGTCGTTGTTTTTCTTCCCCCGATTTTCAAGATGAAGGAAGTAAACATGTCTTTCCCTGTGAGTATGGGGGCTCTGCTTAAGGCAGACCTCCAGGAGGACGCTGCTAGCCGGGACGAGGGCTTGTGTGTTGTCGGTATTTTCGGTAAAAGCAACATGCAGCCCGGACCGCCGAAGGAGTCTATTATCAACAATTTGGCGGACAAACACATCTTCTCGCTGTTCGGCGGACCGGAGGACGGCGGCACCGCGGACAGCCACATCCAGGCTTTCTACAGCCAGGAGAGCCGGGTGCTGTACctgctgctctcctccgtctgcGACAGCCGGCAGCTGCTGCGGGCCTGCGAGTCTCTGAGCGCCGCCACCGGCCACTCCGACGCCCACGACTTCTGGAAAGGCCTGGACCGACAGCACTGCCTCCATCTGCTCTACATGTTCTCCGTGTGCCACGTCCTCCTGCTCGTCCACCCCAACCAGACCTTCGATGTGACCTACGACCGGCTCTTCAGAGCCCTGGACGCCCTGCGACAGAAGGTGCTGCCTCTGATCCGAGCTGCCATCAAAGACTGTCCGGTGTCCAAAGAGTGGAAGGTGAACTGTCGGCCCTGCCCTCCACGCCTGCTCTTCGTCTTCCAGATGAACGGCTCTCTGAAGGTCTCTGCAAACGGTTCAGAGTCTGGGGGAAACCCAGACAAGCCCAAAAAGCACTCTCCCAGGAGGAGGTTGCAGCATGCCCTGGAGGACCAAATTTATCGGATCTTCCGTAAAAGCAGAGTCCTGACCAACCAGAGCAGCAACTGCTTGTTTACTGTGCCCGCCAACCAAGCGTTTGTGTACGTGATACCGGCAGTAGATGAGGACCCAGTGGGTGCCCTGCTTGGTCAGCTGCGGTCCAACTGCATCTTGTGTGAACAAGACACCGTCACGGTGGTGTCAGGGCCGAGGCGCTATCAGCAGATGCGACGTTCAGTTCGGCAGTCCAGCTTCGGCGGAGATCCAGGCAGCATGTCGATGGGCGGTCAGCTGGTGGACTGCAGCCTGAAGGAATTCCTCTGGCAGCACGTGGAGCTGGTGCTCACCAAGAAAGGCTTTGACGACAGCGTCGGCCGCAACCCACAACCTTCCCACTTTGAGCTGCCGACCTACTCCAAATGGGTCCAGGTCGCCTCCAGGCTCCACCAAGTCCTGATTAGCAACACGGAAGAAGAATTAGCCGAGCTAGCCACGAAAGTGCAAGCCCAGCTGAAGGttttggaggcttttctcgATGCTGACACAAAGTTCTCTGAGAACAGGTGCCAGAAAGCTCTGCCACTGGCTCACAGCGCTTACCAGTCCAATCTTCCCCATAACTACACCACTACGGTGCACAAAAACCAGCTGGCGCAGGCTCTGCGAGTGTACAGCCAGCATGCCCGAGGAGTCGCTTTCCAGCGCTATGCACTGCAGCTTCATGAGGACTGCTACAAGTTCTGGAGCAACGGCCACCAGCTGTGTGAGGAGCGAAGCCTGACTGACCAACACTGTGTTCACAAGTTCCACCTTCTTCCTCAGCCAGGAGAGAAGCCAGACCTGGATCGCAATCCACCAATCATGAACcacaacagcagggggcgctccACCAGCTCCTGTAACTGCGGCAGGAAACAGGCTCCTCGTGAGGATCCGTTTGACATCCAGGCTGCCAATTATGACTTCTACCAGATACTGGAGGAGAAATGCTGCGGGAAGCTGGAGAGGATTGAGTTTCCGGTGTTCCAGCCCAGCACTCCTGACCCAGCTCCGGCCTGCAACCAAGCTCAGCGACTCCCGAGTGAGGCCTCAGGGTCTGGTGAGGCGGAGAGGCTGAAGGAGCCAAGCACTGCTCAGAGCCACACACCTGGAGACCCCAGCCTCAGCCTGGCTCTCAGTCTAGGCCAGTCCACGGACAGCCTCGGGCCCTACGCGGACGGAGATGGCACCGAAACCCAAGTCCAGCAAAAGAGGCCAAGCCTTGTTGACCGCCAGCCCTCCACTGTGGAGTATCTCCCGGGTATGATGCACTCTGGGTGCCCCAAGGGCCTGCTACCCAAGTTCTCCAGCTGGTCGCTAGTCAAACTGGGCCCAGCCAAGTCATACAACTGCCACACCGGTCTGGAACAGCCGGGCTTCCTACCCGGCTCCTCCTTCCTCTTGCCGTGGGACTTGGTGATCCGCTCTCGGTCGGAGGAGGACACCGGACTGACGGAGCCTTTGGATGGAGGCACCTCCTCGTGGCCAGCCCCAAACAAGACCCTGGTGGGAAAGCGAGGGAGCACCGGAGGGCTCGGTAGGAGTCGCAGGAGGGATGACATGGCTCGGATCTTCGTGGGGTTTGAGTATGAAGACAGCCGAGGAAGACGCTTCATCAGCTGCGGGCCGGATAAGATAGTGAAGGTGCTGGGGCCAGGGGGCGCCAAAGAACCGGCCACCAGGGTGCTAAACACCGACATGCCGCTGAACATCCAGTCCCCTTCACAGGGCCGCGGCCTGAAGCCTCACTTCGCCCAGCTGGCtcgcctttttattgtggtgccGGACGCCCCACTGGAGGTTACCCTCAACCCACAGGTACTGCCCAGTCCTCCTCCCTGCCCAGTTTTCCACCCAGAGAAGACAGATATAGTGTTGCCACCTGATGGTCTTTGGGTTCTGCGGTTCCCTTATTCCTACGCAACAGATCGTGGCCCCTGTTACCCCCCCAAAGAGAACCAACCACTCAACAACTACAAGGTGCTGCGAGGCATCCTGAAGGCCACGACTGCTAACCCTCCACCACAGTAAACTTAAACCTTTCACAGTATGAaggctttattatttattcaggCTTCCTGATGTAGgctgagaaatgttttttttttgtcagtccGTGACCCCCAGACCTCATCAGGTCAAAATCAGGTTGGATTTCCTGTAAAAGAACTGTTGATATTCACAGTTGCTACACATTAAATCCCATTGATTTTGATGATCTCTAAAAGTTTTGCTGCATAATTCAAACAAATTTATTTTCATGCTCCCAGAAGAAGAACACATTCTGCACTGCCATCCAAActttaaaccccccccccccatttctgTAACTTTCCGTGGCCAGCTTACGTCATGGTTTTGGAAAAGCTCTATTTACCCCATACAAACTCAAACACCAAGCCAACGTTTGAAGGTGTACAGGTTTTGGAAAAGCATAATGTGGACGTACAGTAGCAAATAACAAAGGTCAGCAGCATTGAGCTAGAGTAGCCAATAAAACAGAGGCGAAAGTCGAGTGTCAGTAATTAGGCTAAACTAATGTGTATTCTGCACCACTTTACTTTAAGTCCACCTATTTAGCATTTATTAGCAGtatataaacatttaataaacggtctataacacactataatgtagttgtatgcagatataattatttattaatgtatttgtaaACAACCTCTTGTGGGCTCACATAAGTGGAAGCTGCTGTACAAACATAAGTTATGACAATATAGTAAAACGTGTAATATGAAGTATCTTCATAGGAGAAGTTATAATTGCTGACGAATATTAATAACCTCATATCTGCGTACAACTACATTGTAGTGTGATATAAACCTTTTAATTAAAGGTTTGTGCGCTGCTTGTAAGGACAAACTAGGGAAACCTCCAGTAAAGTGTTACCTGTATTCTGCATCATGTGTAGTATGGTATCCCAACACAAGTATCCTACTACTATTACAATGATTACTGTACATGTTCATGTtttctataaataaaaataattgtttgccattttt

Function

symbol description
smg8 Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Orthologous to human SMG8 (SMG8 nonsense mediated mRNA decay factor).

NR:

description
PREDICTED: protein SMG8

GO: NA

KEGG:

id description
K18734 SMG8; protein SMG8

RNA

RNA id representative length rna type GC content exon number start site end site
TU222374 False 533 lncRNA 0.40 1 8460910 8461442
XM_039826353.1 False 4344 mRNA 0.51 5 8451577 8460974
XM_039826354.1 True 4440 mRNA 0.51 6 8451577 8465799

Neighbor

gene id symbol gene type direction distance location
kcnj15 kcnj15 coding downstream 2315 8445118 ~ 8449262 (-)
vps26c dscr3 coding downstream 10373 8428416 ~ 8441204 (-)
si:dkey-183i3.6 NA coding downstream 118507 8315778 ~ 8333070 (-)
trnal-caa_12 NA coding downstream 159059 8292407 ~ 8292518 (-)
rab24 rab24 coding downstream 173488 8259787 ~ 8278089 (-)
slc37a2 slc37a2 coding upstream 112271 8578070 ~ 8594221 (-)
ccdc15 LOC104960196 coding upstream 129688 8595487 ~ 8603766 (-)
psmg1 psmg1,LOC102782103 coding upstream 138897 8604696 ~ 8614450 (-)
mybbp1a LOC106912003 coding upstream 175473 8641272 ~ 8665459 (-)
tbl2 tbl2 coding upstream 200723 8666522 ~ 8675736 (-)
G164032 LOC103371649 non-coding downstream 37908 8375222 ~ 8413669 (-)
G164031 ttc3,LOC103371649 non-coding downstream 38920 8411409 ~ 8412657 (-)
G164042 NA non-coding downstream 49233 8400979 ~ 8402344 (-)
G164038 NA non-coding downstream 60832 8388362 ~ 8390745 (-)
G164027 NA non-coding downstream 83489 8366403 ~ 8368088 (-)
G164079 NA non-coding upstream 33966 8499765 ~ 8510059 (-)
G164175 LOC101484903,LOC104947545,LOC103360243 non-coding upstream 161998 8627797 ~ 8630886 (-)
G164188 NA non-coding upstream 255311 8721110 ~ 8724296 (-)
G164193 NA non-coding upstream 269580 8735379 ~ 8737503 (-)
G164196 ap2b1,LOC103395083 non-coding upstream 274050 8739849 ~ 8746156 (-)
rabgef1 rabgef1,LOC102778478 other downstream 71002 8368495 ~ 8380575 (-)
G164022 kctd7,LOC102776841 other downstream 99072 8346828 ~ 8352505 (-)
LOC120543652 LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849 other downstream 564489 7861453 ~ 7887088 (-)
wwc1 wwc1 other downstream 1053452 7330914 ~ 7398125 (-)
G163767 NA other downstream 1165312 7257138 ~ 7286265 (-)
trim37 trim37,LOC102780947 other upstream 46375 8512174 ~ 8543503 (-)
G164179 NA other upstream 171915 8637714 ~ 8639161 (-)
plekhb1 LOC107387206,LOC100711952 other upstream 1643357 10109156 ~ 10127607 (-)
LOC120543909 NA other upstream 1997412 10463211 ~ 10489164 (-)
elmod1 elmod1 other upstream 2076419 10542218 ~ 10557276 (-)

Expression


Co-expression Network