G164175 (LOC101484903,LOC104947545,LOC103360243)


Basic Information

Item Value
gene id G164175
gene name LOC101484903,LOC104947545,LOC103360243
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 8627797 ~ 8630886 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU222497
GTGTTTAAGGTTACTGACACAATCAAAGGGTTAGCATAACGTCATTTATTTATAAACTTagaatattacatattttcctTTGATAAGGCAGGTTATATGAACTCCAGAAAGATGATGTTACTGTAAAACATTCCAGCTCTTATTAATGGCATACATTTACAATGAATTCATGTAATAAATGACACAGAATTTCTGTTAGGCCCACTATACAATATgaaggataaataaaaaaagacggGCTTGTACTTAAACCCTCTGTTGGATTCTCAGTTTATTACATGTCAGAGAATACATTATAAATACTCAAAACTGAAAATACTGCTTAGCGCTAAAACTTACGATCTGacacatttaaagaaaaatcttATGTGTATTACTTACTACAGCAAAAAAGTCTTGCATCCTGTCAGGCTAAGAGCTACCTACAGATGTCTAACAGACATTGGAGGACAGTCCTGTACTGTAGGCAAATATGCTAAGTCACTTAATTGAAGGAAGAACTACTACGCAAACAAATAAGCCATTTTCTACAGCCTATATGCAGCTTTGCACTGCCTAACAGCACCACAACATCAATTATAGTCTAACTACGTACTGGTAGTGTGTCAGAGAGACATGCCAAGGAAGATCAGCGAGCCATTATGGTCTGTGTTGTGTCACCAAACTCTTAATAATTTAACACAACCGTGTGTCACATCCCGGGGAGGATTTAAAGTTTAAACATATTTGAGGTTTAAACAACGTTTTAggctgaggaagaggaagaggtccAAAAGTCAAAGCAGGCAAATACTTTACACAGTCCCATAAGGAAGTAGCCTACCGGTTGGCTAAATACTAGTGTAGCTAGAAGGAAGGTGTGTGGCCACATAGCTATATCCTTTACGCCACTGTACTAGGCTGACTATTCTACTCAGTATTCTGCATTGCTGTTTCTAAGTCATCTACAAGCAGCCgagatgggtgtgtgtgtgtgtgtgggggggttcttTGTGCCTTATTGCTTTTCCTGTTTATTCCACAGTCTCATTCCCTGAAGTTGCACTAAGTTAACAGTCGAGAGCAACTGGGTCGTGCCGCGCCGGTTCGCCCTCCGCCGCTTCGCTGGCGTCCGCGCCCTCCGCCGCTTCGCTGGCGTCCGCGCCCTCCGCCGCTTCGCTGGCGTCCGCGCTCTCCGCGCTCTGGCACGAGAGCCTCTCCACATCACATCTCACCGGACGGACGATGACGCACGGCCTCGCGGGCTCCCCGCTCGCCCCTGCGCCGCCGCGCGCGGGGCTGCGACTGTCGCGCTCGTATTCCTCCTGAGCGCGCTGGATCTTCCTGTTCCGAAGCTTCCTCTtgtggaagtggaacgttgccAGGGAAACGAGGATGATCCCGACGAGCACGGCCACCAGCACGAGGAGCGCTAGGGTGGAGGAGAACGGCGGAAAAAAGCTGAGGTGCTCCGCGCAGGTGCCGTTATCGGCCTGGAAACCCCCGTGACAGCGGTGCAGCGGCACCGACAGTCCCGAGGCCTCGGAGCTTCTGGCTGTCATCCGGTCCACCTTTCCCGAACCACTCTCGTCTCTCTGACACCCCCTGTACCCTTCGTGCTCTCCGGGGCTCAGCGCGGTGACACCGGCCCGCGCATGTGGTTACCTGATGAAATCGTCAGTGCGCGGCACAGTCCGTGAGTGGAGAGCCGATGTGTGTAAATGGGAGAACAGGATCACGGTGACGCATTTCATACAATGAGATGCTGCTGCTGAGTTCCGATCACTCAGGACGCTTTGATTGCCGCAATCAGCTCAGTCTGCATTCAAGACAGCGCTTCCCCGGCTAAATACTACAAGCAACGCGGGGAATTCCTCCGTATACATCAAAGggggcttttaaaaaaagaaaatgagaaagaGCTGTGGTCTGGTTTTTCCTAGAAAAGCGTCCCCTCCTCCGGTCATCCGCTGCTCCACTCAGCATCTGAATGAAGCGCTGCAGCTGCATTAAAGggtgacagtggatagacaggaaaggtgggagagagatgggggatgacacgcagcaaagggccgcaggtcggagtcgaaccctggccgctgcaaagg

Function

NR:

description
uncharacterized protein C11orf87 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222497 True 2090 lncRNA 0.50 3 8627797 8630886

Neighbor

gene id symbol gene type direction distance location
psmg1 psmg1,LOC102782103 coding downstream 13347 8604696 ~ 8614450 (-)
ccdc15 LOC104960196 coding downstream 24031 8595487 ~ 8603766 (-)
slc37a2 slc37a2 coding downstream 33576 8578070 ~ 8594221 (-)
kcnj15 kcnj15 coding downstream 178535 8445118 ~ 8449262 (-)
vps26c dscr3 coding downstream 186593 8428416 ~ 8441204 (-)
mybbp1a LOC106912003 coding upstream 10386 8641272 ~ 8665459 (-)
tbl2 tbl2 coding upstream 35636 8666522 ~ 8675736 (-)
pom121 pom121c,pom121 coding upstream 46397 8677283 ~ 8689128 (-)
LOC120543560 LOC104952473,LOC101069911,LOC105023963 coding upstream 58493 8689379 ~ 8695951 (-)
zw10 zw10 coding upstream 67344 8698230 ~ 8710078 (-)
G164079 NA non-coding downstream 117738 8499765 ~ 8510059 (-)
G164085 NA non-coding downstream 165002 8462478 ~ 8462795 (-)
G164032 LOC103371649 non-coding downstream 214128 8375222 ~ 8413669 (-)
G164188 NA non-coding upstream 90224 8721110 ~ 8724296 (-)
G164193 NA non-coding upstream 104493 8735379 ~ 8737503 (-)
G164196 ap2b1,LOC103395083 non-coding upstream 108963 8739849 ~ 8746156 (-)
G164243 NA non-coding upstream 198985 8829871 ~ 8830426 (-)
G164267 NA non-coding upstream 284749 8915635 ~ 8926325 (-)
trim37 trim37,LOC102780947 other downstream 84294 8512174 ~ 8543503 (-)
smg8 smg8,LOC102779993 other downstream 161998 8451577 ~ 8465799 (-)
rabgef1 rabgef1,LOC102778478 other downstream 247222 8368495 ~ 8380575 (-)
G164022 kctd7,LOC102776841 other downstream 275292 8346828 ~ 8352505 (-)
LOC120543652 LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849 other downstream 740709 7861453 ~ 7887088 (-)
G164179 NA other upstream 6828 8637714 ~ 8639161 (-)
plekhb1 LOC107387206,LOC100711952 other upstream 1478270 10109156 ~ 10127607 (-)
LOC120543909 NA other upstream 1832325 10463211 ~ 10489164 (-)
elmod1 elmod1 other upstream 1911332 10542218 ~ 10557276 (-)
G164728 NA other upstream 2393155 11024041 ~ 11025991 (-)

Expression


Co-expression Network