LOC120544113 (LOC104924140)


Basic Information

Item Value
gene id LOC120544113
gene name LOC104924140
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 12294593 ~ 12311869 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU223469
CGGACGGCTGCTTagacacatttacattttcacatGTGGGACGATTCAGTCGTTTTGGAAACTATCAAATTCTTTTTTCCAGGATGACTTTAGGTGGCTTTGCGCTGCAGGCATATCGCGGTGCCCAGAAGCCAACCGCCATGGAGGTGATGAAGTCACAGGCCACGCGTCTGGCTGACCACTCCGCCGCTCAGACAATGGCTCCTCCCAAAATGGAGATTCCCACAGTGGATGGTCGACGGGAGGGAGTGCGAGCACACAAGCTCAAACCCAGAGACATGAACGTCCTGACGCCCTCTGGCTTCTGAGAGGACGCACCACATCTGTCAGAGCTGCTCATCACTCAGATGCCAAAGGTCCCATGAAATGACAATGTCTCTGTGTTGTTATGGGTTTGGGATGACATTTCCATCCAATGATGTCATCGTAGACTTTTGGGGTCAGCAAATCTGTTTCATTACAACTTGGGTCTCATTTTCGTAGTTTTGTATATAATTCCTGTATTCTCACACAACGGTTCGCACATTTTCAATAATATGACCGTTCTATTCAACGTTGGGAAACGGCGACCGTTACGTGAtcgtagagctgggcaatatatcgatattatattgatatcgtgatatgagactggatattgtcttagattttggatatcgtaatatggcataagtgttgtcttttcctggtttcctgatgtcattttctgaacttaccaaactgttctattatttgcctttacccacttagtcattatatccacattactgatgattatttgccaaaaatatcattgtgtaaatattttgtgaaggcaccaatagtcaacactacactatcgttgtggtatcgatatcgaggtatttggtcaaaaatattgtgatattttattttcttcatatcgcccagccctacgtgATTGTTAACGTGATTGCTACATTTAGGTCCCAAAAGTTCTgaaaaaagatcatggtttgggttaaaaataAGTTACCTTCCGTATGTAACTACTTAACGTAGTGACATTGAACTTGACGTAGTTCCGTACGGATGTTAACTTCCATAACTTAAAACAAcaacgttgacttttggtttcgcAGGGGACACGAGCAGCGCTCTCCCGCGTGAATGTCTCGTGTTTATTCGACCCATCAATCCACCCCAACCTCCTTCCTGCACAAAACCTTCTTTTATACCACATTACCTGGCTGCCCCCTTTGCTCCCGTCATGATTACAACAGCCACTATACGTCACTGCCTAACACCACCAATATGGGTCGTAATGATTACGTGGGTTAATATACaaattagaggtgtgaatcttcactgatctcccgattcgattagattaagattatcatgtcagcgattcaattcgattcgatatcccgatgcgtcaaataaatttttatattaaagccatgtaggatatttaattcttttcaagcttcaaaaacaaaacatactgtagtgctctaatactaaataaattggatgcataaaactacagcactgagcacatgacaaaacagaatatgtaatagaaatgttgttaggcctacattaaattgtaaaccgaaataatcgattatgagcctgccgattatcgatgcagcatcgtccatgcccacgattcgatgcatcgattatttgattaagtTCAACACCTCTAATACGAATTACCGTGCATTACTTTTTGTAAGCATGTGTACGATCAGTGAATAAGGACAGCCTGTCCTGTTTGTGGAAATACTCAACAAGGTAATACCTGTCATCTGGGATAGTGGCAACATTATCAAAAAGAAGTCCGACAGGGCACGTTgtaaacaaccccccccccccaggttaGACAAATATatttagcagaaaaaaacaaagtccTGTCGTCCTTTTTGCATGCAAAAACTCCAAGCCATTTCGTGGGACCTTTTTTACAAGCAGCTCCGACATTCAGATCACCACTGTACTTGTGACCGTCTTTGCCATTGAAACTGCTTTGCGGTGTTTACCGTGTCGCTTGCCTGTAAATTCATACTCTCTTAACTGTTACATCTAGTTGCAGCGTGCTGGCATCAACATGGGCTCAAGCCAATAAATTCAACTTGAACTTCCGAGTCCAGGTTACCTGGAGagcctgactgactgactgatctTGAGGACTTTGTCCAGCTAAAGGTAAAGATGGTGGTGATCCTGGTTTAAAATGACCCTCCTGTAAATGCACTTTATTCCCACTCTTCCCACCGTAGAGTCCACATGCTCGATTATCCAACCTGACCCAAAACCTCTCGTGTTACAAAGCCCTTCAGAATGCAACGAAATGTGAGAAAACCTCCTCTTCTTCAGTGTTGATAGTCTTTACATCCTGTTTGTCTTTAAACCGTATCATTTATCTTCCTAAAGGTGCATTTCATTAAGCAAGGTGGGAAGAATAAGTCTAACCAATTCCTTCAGTGTGGTTGAATACGAATCAAACCAGCAGTGCAAAAAGATCTGAAAACAATTCAACACTGAAACGTTCCACTCATTTGTTTTGCATTCCACTTTCTATAGATGTTTTAATTTATAGATTAATATTGTTAATATATGCTACTCTAGCAACAGATTTTGGTTCATTACGGATCAGAAGATaaaagatgtgtgtgtttaaaaaaaaaaaaaaaaaatcggagcTACATGTGGCCAGGACTCTCACACTGACATGCTGCAGTGTTTTCAGATTGCTGGATTCAATCAAAATGGAACACTTAAAAGAACCAAAAAGAAGAGTGTTTAAGGCCTCTTTTAGTTTTCAGTGTGTGAGCTCCGTTAACATGTCTGCCTCTGTTTTCTACCAACGGTCAAATATATAAAGAGTTTGTGTTTCTGATgagttttggtgcttaaccgcTGCAGTGAAGTGAAGAGATAGATGGTGTGCACACCGCAGAAACCTTGTGTCACTCAGAATAAGTGGAAGAGCTTTTCACAGACACCCTTTTGCTTTTGGCGTTTAAACATAAATGCAGTCATCAGTGCAAGGAAATGTTGAGAAAAATCTTGTCCGACAATACCAGAAAATAACTGAAGTACAAGGTTTTGTTCTAGAAACTTCAATGAGATTTCAGCGGTTTGAGTTGCTAAGAGAGGTGTCAACCATTCAACTTAGTGTTGTAGCAAAGACTACCTAAACTAAGACCAAGTCATGACTTCCAGACTGCATCAAGaccaagacaagaccaagacttcaaggggttgagaccaagtcTAGACCAAGACCAGAGCAGTCCCACACTGCAAGacacactttaaaataaaatgtggaaCATGCAAACCATAGGCACTCCTCCGATTGATCTGAAAGATCCACATTGTTTATTCCCTAAAACACCCACGGAAAGCAAATTTAAGGTTCCTCTTAATTTGCCTCTTTTACGTGTGTGGATGTATAAGGGTACCACGAGAAATGTCCTGATAAAATAATCATTGCAGAGGTGAATTTTATGTGTAGGTATTTAATGATGTTACTGCAGTTGTGATCTTGactggtcttgaaataaaatcctgatTAAAAATGCAGTCCATCCGAGACGAGACCTTCAAAAAAGTAGTCTTTAGTACTACAATTCTACAGTACTAGTTTACTGCTAATAAATGGGtctttataaaaggtttctgcaagatgatgtgtgtgtgtagagcttAATGAGCGCTGCGATTCATCTGTTAAATGAAATGTAGCGCCTGGCTGATAGTTGTTGTTATCATTTCACTTTTATTAAGTGGAAGCAGACTGTTTGCTGGTAATAGATTCTATGTGTTATGTGACACACAGCAGTGGAAGTAAAAAATGTCCCAGTCAATCGCCACCTGTAACTCTGCTGTGTCAGTCAGATGTTGTGTTGGATACAGAAGACTAACACACTCTGCTTTCAGCAGctgtaaatattaaatgaatatgACTGTGTATGCTCCGTTAACGTTTATGTTTAATAGTTTGTGTTCACAAGTGCTCTGTGTTTAAAGTGTGACACTGTTCCCTTTAAATCTCTACCTgactgaaatataaaatatgtatctcctgtgtgtgtgtggtggtgtgacTGTAGTACAAATTGACTGAATTACAGTTTCTGTTTAtctgtttgacattttttcagttGATGATAA
>XM_039777685.1
AGAACAAGCACCGTAATGTACCACTCCATTGAGGAAGCGGCTTTTATTTATCGGACACAATAATGGCTACAGCTATCCGACGACTCCGTTATTTTCTGCGCGATCCAGTCGATATTGGTGGGTCACTGATGTCTCCGTCGTCCTGAAGACGCCATTACCTCCGgtCCTGTTCTGGTTGATCTTGTTCATTGTCTTACTGAAATCATGTCTGGCTCAGGGGACTTACCAGCCTTGGAGGGTTCAGGGATGGGCGGGATGAGGCTTCCCGTCGGGATGACCCGACGAGCCCTCAGCTACGATGATAACCTGGAGGCCCCCATGTCCACGCCCCCCCATGACATCAGCATCAACAAACTGTGGAGACGACCCGTCATACCGGATAGGAAGTTTAACCAACTAGCTGaggAGGATGAGAGTGGTGCAGTGAGTCGGTCTAAAGTGACGGACAGCGCCCCCTCCAGGTCACCAGTTGTAGTGAAAACCAAGGCCTCCTCCATCATCATGAATTCTCTCATCACCAagCAGACTCAGGATAGTGTGTACAATTTTGAGCAGAGGGCCGGGCTCACCGACACCAGCTACACTCCCCACAAAGGCCTCACCGCTGAGGAGACGAGACACCACCACCGCATGCCCGAATCCCTCCAGAAACTGCAGATCCAGAGCATGGAGGCCAGAGAAGAGCGACAGAGCTCCTCCACCCAGTCCACTCCATCCAACACACCACACAGCTCCCCGAGACAACAacgcagGGGCTGGTTCGGCAGTACCAGTTCAGATGTCAGCTCCTCCAACAGCAGTGTGGACCTGGCAGGAGGAGACCTGGCGGTCGAACGGTGGAGCGTGTTCGGGCCTCGGCCGCTCGTCCAGAAATCGACTTCTGACCTGGGATCAGACTCTGCCACAGCAGGTGGCTTTGCGCTGCAGGCATATCGCGGTGCCCAGAAGCCAACCGCCATGGAGGTGATGAAGTCACAGGCCACGCGTCTGGCTGACCACTCCGCCGCTCAGACAATGGCTCCTCCCAAAATGGAGATTCCCACAGTGGATGGTCGACGGGAGGGAGTGCGAGCACACAAGCTCAAACCCAGAGACATGAACGTCCTGACGCCCTCTGGCTTCTGAGAGGACGCACCACATCTGTCAGAGCTGCTCATCACTCAGATGCCAAAGGTCCCATGAAATGACAATGTCTCTGTGTTGTTATGGGTTTGGGATGACATTTCCATCCAATGATGTCATCGTAGACTTTTGGGGTCAGCAAATCTGTTTCATTACAACTTGGGTCTCATTTTCGTAGTTTTGTATATAATTCCTGTATTCTCACACAACGGTTCGCACATTTTCAATAATATGACCGTTCTATTCAACGTTGGGAAACGGCGACCGTTACGTGAtcgtagagctgggcaatatatcgatattatattgatatcgtgatatgagactggatattgtcttagattttggatatcgtaatatggcataagtgttgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223469 True 4149 lncRNA 0.40 2 12305684 12311869
XM_039777685.1 False 1497 mRNA 0.53 8 12294593 12308400

Neighbor

gene id symbol gene type direction distance location
zgc:158291 zgc:158291,LOC107387148,LOC104965395,LOC101076515,LOC103395138,LOC107697335,LOC107675183,LOC107587290,LOC105901510 coding upstream 186125 12103785 ~ 12108468 (+)
cldn2 cldn2,LOC102201381,LOC101477941,LOC103375965 coding upstream 452876 11836615 ~ 11841717 (+)
dtx2 dtx2,LOC101480294,LOC102304721,LOC103146114,LOC106924423,LOC103476279,LOC106954657 coding upstream 556197 11716728 ~ 11738396 (+)
arhgef12b LOC103374540 coding upstream 1291034 10963159 ~ 11003559 (+)
lrrc32 lrrc32,LOC104944766 coding upstream 1365951 10920209 ~ 10928642 (+)
btg4 LOC104941696 coding downstream 64031 12375900 ~ 12378914 (+)
LOC120575699 LOC103363899,LOC104924193,LOC102296018,LOC102776456,LOC104941697,LOC108250331 coding downstream 70948 12382817 ~ 12391830 (+)
LOC120575701 LOC103354648,LOC100698795 coding downstream 105642 12417511 ~ 12418379 (+)
zmat2 zmat2 coding downstream 132281 12444150 ~ 12447615 (+)
foxi3a LOC105026277,LOC108269392,LOC103035522 coding downstream 159915 12471784 ~ 12473935 (+)
G164844 NA non-coding upstream 198769 12095579 ~ 12095824 (+)
G164759 NA non-coding upstream 550631 11743690 ~ 11743962 (+)
G164750 NA non-coding upstream 578054 11716325 ~ 11716539 (+)
G164749 NA non-coding upstream 590448 11702480 ~ 11704145 (+)
G164699 NA non-coding upstream 600869 11645027 ~ 11693724 (+)
LOC120544195 NA non-coding downstream 37068 12348937 ~ 12352185 (+)
G164894 NA non-coding downstream 177805 12489674 ~ 12541314 (+)
G165000 LOC103376870 non-coding downstream 282652 12594521 ~ 12594746 (+)
G165037 NA non-coding downstream 495915 12807784 ~ 12808093 (+)
G165026 NA non-coding downstream 518892 12830761 ~ 12887695 (+)
klf8 LOC101477270,LOC100704719 other upstream 332704 11865601 ~ 11961889 (+)
lig3 tmem248,lig3,LOC102796031,LOC102796838 other upstream 1045274 11216561 ~ 11249319 (+)
rcc1l rcc1l other upstream 1270394 11013623 ~ 11024199 (+)
mpzl1l LOC104919192,LOC102794867,LOC102196015,LOC103357763 other upstream 1384840 10889807 ~ 10909753 (+)
rabep1 rabep1 other upstream 1408266 10852285 ~ 10886327 (+)
LOC120575591 LOC104924162 other downstream 18088 12329957 ~ 12347052 (+)
lcp2a lcp2 other downstream 138893 12450762 ~ 12468314 (+)
G165033 NA other downstream 482691 12794560 ~ 12797300 (+)
G165043 ddx46,LOC102797024 other downstream 505362 12817231 ~ 12820709 (+)
gabra6b NA other downstream 2550792 14862661 ~ 14901003 (+)

Expression


Co-expression Network