LOC120544195


Basic Information

Item Value
gene id LOC120544195
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 12348937 ~ 12352185 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU223475
GGGTCAGCAGTAATTGTGCCCAGTGCCCAGCAGCACCCAGGGAGCCAAAATCCTGTTTATACCTCTGCCAACGCCGTCCTCCAACTGCTGTGACGAATTCTTGTGCCTCCACCTGGGCCTGGGATCTGTTTCTAAGAAGCCTCAGAGTGTTTTTAACCAACGTGAGGAGTTTTTCCAGATCAGTCTGTCAGGAAAGAGTTCATCTCAACAGGATTGTTAAGACGGAAGATGTCCTTAAAGAGACGGCTGCTGTCCATGTTGTTGTGCTGTGTTTATTGCGTGGCCTCGCTCTTCTGCCTCCACCCAAACCGCAACAACTGCTTCTCTATGGGAGCTCGGAATCTGGTGTCAGTCGTTCAGCAGCTTTACCAGCGTGTCATTCGACTGCTGCGCACCACTCTGTGATCCACAGCGCTGCCTGTGTTTCAACCAATAACTCCGGACCTGTCCTGCCACTGCGGCCACTGTGGCTGTTTTCAAGCATGTCCACCAGTAGTGCATCACCAACTTAAAATAATAagaagaaacagagaaagatggaCATGGACTTTCAGTTTTCTCTGATTTGGGATCCAAGTGCCCTGTTGTTTTCGCTACTGCAATTCCCAACTATATTTTAGATGAAgttaaaaagttattttttttaccgaCGTAGATTAACATTGTGGATATCTGCTGTGTGAGATGCGAGTGATGTGAAAAGGACAGTAgtcttttaaatgcattttgagGGTTCACTGTGAGCTTGGCTGCTGTTCTGTACACTGCAACAGCAGAAGAATGAAGGTTAAAGAAACAGGCTTGTAACTAGGTGTTTGCTGGTTGAAATTGGCAGTATTGTTGTAGTAATCCAGATCTTCTTCCCTTCATTAACAATCACAGAgctgtccctgagcaaggcacaaAAAGTTTTTAGTGGAGCTGCATTGTAGCTGGCAGTTGCACCTGTGTTGTGAGTGTagcttcaaacacacacattagaggTCGTCACAGGTTTAACATTTAGGAAATCCTGCCCAAAAGTCAACATGTATTAATTAATTTTCATGGAAAGGTCTTAAAGGAGACTGGGTCCAAAAGGGACTTGAAAATAATCAGATCCAATCCAAAATGGAGTCGACCCTATCAGACCCaagcagagagagaacacactAGCACTGGCAGCAGTAGCATGCCCCACCGATTAAGGAGCAGCCATAATAGGAAAATGTAGCAATACATGTTAGTTTCCACTGAAACACTATGTGATCAGAACTGATAGTGAGTATTCTCAAGACCTGAGTCTTGCACCAATACCACCAGGCACTAGTCTGACCAGTTAGAGAACCAAGGCTTTAATATGTCACATCAACACTTAACTTATGCTTTGCAAGTGCACAGTTGTACATAGTTTATAATGTGTCCTTACTTCCCGGTGTAAGAGCTCTACGGGGGGAAATACAGCAAGAGACGCATCAAATTCTGTGACAGGGAAAAAGGAACCATATGCACCAAGACAGCTTTGCCTTGTTTTTGCTGTAATGCCCTTTACAACTATATGTAGGGTATGTGTTAGACTTAAAAGGCATTTTGGACTGCCAAACAgtttttta
>XR_005636474.1
CAAAATCCTGTTTATACCTCTGCCAACGCCGTCCTCCAACTGCTGTGACGAATTCTTGTGCCTCCACCTGGGCCTGGGATCTGTTTCTAAGAAGCCTCAGAGTGTTTTTAACCAACGTGAGGAGTTTTTCCAGATCAGTCTGTCAGGAAAGAGTTCATCTCAACAGGATTGTTAAGACGGAAGATGTCCTTAAAGAGACGGCTGCTGTCCATGTTGTTGTGCTGTGTTTATTGCGTGGCCTCGCTCTTCTGCCTCCACCCAAACCGCAACAACTGCTTCTCTATGGGAGCTCGGAATCTGGTGTCAGTCGTTCAGCAGCTTTACCAGCGTGTCATTCGACTGCTGCGCACCACTCTGTGATCCACAGCGCTGCCTGTGTTTCAACCAATAACTCCGGACCTGTCCTGCCACTGCGGCCACTGTGGCTGTTTTCAAGCATGTCCACCAGTAGTGCATCACCAACTTAAAATAATAagaagaaacagagaaagatggaCATGGACTTTCAGTTTTCTCTGATTTGGGATCCAAGTGCCCTGTTGTTTTCGCTACTGCAATTCCCAACTATATTTTAGATGAAgttaaaaagttattttttttaccgaCGTAGATTAACATTGTGGATATCTGCTGTGTGAGATGCGAGTGATGTGAAAAGGACAGTAgtcttttaaatgcattttgagGGTTCACTGTGAGCTTGGCTGCTGTTCTGTACACTGCAACAGCAGAAGAATGAAGGTTAAAGAAACAGGCTTGTAACTAGGTGTTTGCTGGTTGAAATTGGCAGTATTGTTGTAGTAATCCAGATCTTCTTCCCTTCATTAACAATCACAGAgctgtccctgagcaaggcacaaAAAGTTTTTAGTGGAGCTGCATTGTAGCTGGCAGTTGCACCTGTGTTGTGAGTGTagcttcaaacacacacattagaggTCGTCACAGGTTTAACATTTAGGAAATCCTGCCCAAAAGTCAACATGTATTAATTAATTTTCATGGAAAGGTCTTAAAGGAGACTGGGTCCAAAAGGGACTTGAAAATAATCAGATCCAATCCAAAATGGAGTCGACCCTATCAGACCCaagcagagagagaacacactAGCACTGGCAGCAGTAGCATGCCCCACCGATTAAGGAGCAGCCATAATAGGAAAATGTAGCAATACATGTTAGTTTCCACTGAAACACTATGTGATCAGAACTGATAGTGAGTATTCTCAAGACCTGAGTCTTGCACCAATACCACCAGGCACTAGTCTGACCAGTTAGAGAACCAAGGCTTTAATATGTCACATCAACACTTAACTTATGCTTTGCAAGTGCACAGTTGTACATAGTTTATAATGTGTCCTTACTTCCCGGTGTAAGAGCTCTACGGGGGGAAATACAGCAAGAGACGCATCAAATTCTGTGACAGGGAAAAAGGAACCATATGCACCAAGACAGCTTTGCCTTGTTTTTGCTGTAATGCCCTTTACAACTATATGTAGGGTATGTGTTAGACTTAAAAGGCATTTTGGACTGCCAAACAgt

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223475 True 1592 lncRNA 0.44 3 12348937 12352185
XR_005636474.1 False 1541 lncRNA 0.44 3 12348982 12352179

Neighbor

gene id symbol gene type direction distance location
zgc:158291 zgc:158291,LOC107387148,LOC104965395,LOC101076515,LOC103395138,LOC107697335,LOC107675183,LOC107587290,LOC105901510 coding upstream 240469 12103785 ~ 12108468 (+)
cldn2 cldn2,LOC102201381,LOC101477941,LOC103375965 coding upstream 507220 11836615 ~ 11841717 (+)
dtx2 dtx2,LOC101480294,LOC102304721,LOC103146114,LOC106924423,LOC103476279,LOC106954657 coding upstream 610541 11716728 ~ 11738396 (+)
arhgef12b LOC103374540 coding upstream 1345378 10963159 ~ 11003559 (+)
lrrc32 lrrc32,LOC104944766 coding upstream 1420295 10920209 ~ 10928642 (+)
btg4 LOC104941696 coding downstream 23715 12375900 ~ 12378914 (+)
LOC120575699 LOC103363899,LOC104924193,LOC102296018,LOC102776456,LOC104941697,LOC108250331 coding downstream 30632 12382817 ~ 12391830 (+)
LOC120575701 LOC103354648,LOC100698795 coding downstream 65326 12417511 ~ 12418379 (+)
zmat2 zmat2 coding downstream 91965 12444150 ~ 12447615 (+)
foxi3a LOC105026277,LOC108269392,LOC103035522 coding downstream 119599 12471784 ~ 12473935 (+)
G164844 NA non-coding upstream 253113 12095579 ~ 12095824 (+)
G164759 NA non-coding upstream 604975 11743690 ~ 11743962 (+)
G164750 NA non-coding upstream 632398 11716325 ~ 11716539 (+)
G164749 NA non-coding upstream 644792 11702480 ~ 11704145 (+)
G164699 NA non-coding upstream 655213 11645027 ~ 11693724 (+)
G164894 NA non-coding downstream 137489 12489674 ~ 12541314 (+)
G165000 LOC103376870 non-coding downstream 242336 12594521 ~ 12594746 (+)
G165037 NA non-coding downstream 455599 12807784 ~ 12808093 (+)
G165026 NA non-coding downstream 478576 12830761 ~ 12887695 (+)
G165062 NA non-coding downstream 566248 12918433 ~ 12930274 (+)
LOC120575591 LOC104924162 other upstream 1885 12329957 ~ 12347052 (+)
LOC120544113 LOC104924140 other upstream 37068 12294593 ~ 12311869 (+)
klf8 LOC101477270,LOC100704719 other upstream 387048 11865601 ~ 11961889 (+)
lig3 tmem248,lig3,LOC102796031,LOC102796838 other upstream 1099618 11216561 ~ 11249319 (+)
rcc1l rcc1l other upstream 1324738 11013623 ~ 11024199 (+)
lcp2a lcp2 other downstream 98577 12450762 ~ 12468314 (+)
G165033 NA other downstream 442375 12794560 ~ 12797300 (+)
G165043 ddx46,LOC102797024 other downstream 465046 12817231 ~ 12820709 (+)
gabra6b NA other downstream 2510476 14862661 ~ 14901003 (+)
G165556 yipf5,LOC102777143 other downstream 3604295 15956480 ~ 15958135 (+)

Expression


Co-expression Network