G165043 (ddx46,LOC102797024)


Basic Information

Item Value
gene id G165043
gene name ddx46,LOC102797024
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 12817231 ~ 12820709 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU223701
GTCTGCAgatccacctcctcctcctctgacgAGTATTCCATAGCATCCTGGTCATTCTCCATCAGCTCCCCCTTCTTTTTGTGAGTGTTGGGTCCTTTCTTGGTTTTAACAACGGTCACCACTTTGGTTAATGTCATTGCTCCTTTCTTATCATTTCCTTTCATGGCTCCCATGTTGAACTTCTTCACCTCCTGTTTCACCTCCTCCATGTAGGCGTCCAGAGGATCCACGTCGTCCTCCTCCGCCTGCTGCACCATGGgagtctcctcctccttctcaccctcctctttcttctcctccgttatctccttctctttcatctcctccttctcttccccATCTTCGTCATCGTCTCCCTCCATTGGAGCTGAAACATCTTCGTCATCATCCTCGTCATCCTCCAGGCTCCACTTCTTGCCCTGCTTCATCTCCTCCAGTTCTCTCTTGAGCTCTCCGATGTTTTCGATGGCCTTCTTCCTCTGCTCTTCCCTCCACTTCTCCACTcgctccttcctcttcctcatctcctcctccagcttGTTTTGGTCAAAGTCTTGATCTTCAACCTTCtcatcctctttctcctctttaaTCTTTTTCTTGTCAGATAAAGGATCAATGTTGTCTTTCTCATTGCTCCTGGACTCATCTGGTCTCCTGCTCTTGCTGGGGCTACCAGATCGGGACCTGCGGGCTCGGCTCCTGCTGCCAGACCTCCTCCTGTCTCGGCTTCTggacctcctcctctctctgctccGGGATCGCCTGACTCGTTTTCTGTCCCTGGACCGGGACCTTCGGCGGTCCCGGCTCCGTGACCGTTCCCTCCTGTTTCGGTCTCGGTCATCTTTCTTGGAGCGTTTGTCCGGGGAGCGACTCTTTGATCGGCTACCCGACCGTCCCCGAGACGCAGAACGCTTCCTGTAGTGTCTCGACTCACGTCCCATTGCTATTCTACGAGGCTATgtcttgtaaaaacaaaagtcaaatTAGTTCACAGATAGCAACGAGTCTTGTGCGACGGACGGTTGTTTGTGTC
>TU223702
GTCTGCAgatccacctcctcctcctctgacgAGTATTCCATAGCATCCTGGTCATTCTCCATCAGCTCCCCCTTCTTTTTGTGAGTGTTGGGTCCTTTCTTGGTTTTAACAACGGTCACCACTTTGGTTAATGTCATTGCTCCTTTCTTATCATTTCCTTTCATGGCTCCCATGTTGAACTTCTTCACCTCCTGTTTCACCTCCTCCATGTAGGCGTCCAGAGGATCCACGTCGTCCTCCTCCGCCTGCTGCACCATGGgagtctcctcctccttctcaccctcctctttcttctcctccgttatctccttctctttcatctcctccttctcttccccATCTTCGTCATCGTCTCCCTCCATTGGAGCTGAAACATCTTCGTCATCATCTGAAATGAAGAAGAGTCAATTAGGTTATTAATTAAG

Function

symbol description
ddx46 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Acts upstream of or within several processes, including animal organ development; mRNA splicing, via spliceosome; and positive regulation of cell differentiation. Predicted to be located in Cajal body and nuclear speck. Predicted to be active in nucleus. Is expressed in brain; digestive system; head; hematopoietic system; and pectoral fin bud. Orthologous to human DDX46 (DEAD-box helicase 46).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223701 True 1039 TUCP 0.52 8 12817231 12820709
TU223702 False 425 lncRNA 0.48 3 12817231 12818667

Neighbor

gene id symbol gene type direction distance location
LOC120575626 NA coding upstream 17219 12797997 ~ 12800012 (+)
pitx1 pitx1,LOC100690583 coding upstream 56955 12747967 ~ 12760276 (+)
LOC120544088 LOC102798793,LOC104924243,LOC101475378,LOC100699679,LOC101078553,LOC103363335,LOC108238083,LOC107386699 coding upstream 184344 12611856 ~ 12632887 (+)
larp1 larp1 coding upstream 228645 12529315 ~ 12588586 (+)
foxi3a LOC105026277,LOC108269392,LOC103035522 coding upstream 343296 12471784 ~ 12473935 (+)
sar1b sar1b,LOC107713617,LOC107603246,LOC102795722 coding downstream 44538 12865247 ~ 12874039 (+)
cdkn2aipnl cdkn2aipnl,LOC102794961 coding downstream 294174 13114883 ~ 13116904 (+)
ppp2cab ppp2ca,LOC107085894 coding downstream 324224 13144933 ~ 13155644 (+)
skp1 skp1,Skp1,SKP1 coding downstream 336373 13157082 ~ 13162735 (+)
vdac1 vdac1 coding downstream 461186 13281895 ~ 13293010 (+)
G165037 NA non-coding upstream 9138 12807784 ~ 12808093 (+)
G165000 LOC103376870 non-coding upstream 222485 12594521 ~ 12594746 (+)
G164894 NA non-coding upstream 275917 12489674 ~ 12541314 (+)
LOC120544195 NA non-coding upstream 465046 12348937 ~ 12352185 (+)
G164844 NA non-coding upstream 721407 12095579 ~ 12095824 (+)
G165026 NA non-coding downstream 10052 12830761 ~ 12887695 (+)
G165062 NA non-coding downstream 97724 12918433 ~ 12930274 (+)
G165076 NA non-coding downstream 259070 13079779 ~ 13124053 (+)
G165078 NA non-coding downstream 300100 13120809 ~ 13121842 (+)
LOC120544692 NA non-coding downstream 486663 13307372 ~ 13387090 (+)
G165033 NA other upstream 19931 12794560 ~ 12797300 (+)
lcp2a lcp2 other upstream 348917 12450762 ~ 12468314 (+)
slc25a14 slc25a14,LOC103146102,LOC106926506 other upstream 446364 12294450 ~ 12370867 (+)
LOC120575591 LOC104924162 other upstream 470179 12329957 ~ 12347052 (+)
LOC120544113 LOC104924140 other upstream 505362 12294593 ~ 12311869 (+)
gabra6b NA other downstream 2041952 14862661 ~ 14901003 (+)
G165556 yipf5,LOC102777143 other downstream 3135771 15956480 ~ 15958135 (+)
G165702 NA other downstream 3764433 16585142 ~ 16626346 (+)
LOC120544324 NA other downstream 3915955 16736664 ~ 16754289 (+)
LOC120544384 LOC100708800,LOC102793722,LOC102204659,LOC102301331,LOC103375969,LOC101471849,LOC101156840 other downstream 3989177 16809886 ~ 16837171 (+)

Expression


Co-expression Network