G165556 (yipf5,LOC102777143)


Basic Information

Item Value
gene id G165556
gene name yipf5,LOC102777143
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 15956480 ~ 15958135 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU224426
CATATGAGAGCCAAAGAAGGATATAGAAGTCACAGGTTGTGGTTCACCTACCTTCTAGCAGTGGTGGCTCATCGTCGAAGCCGCTACTATACATGGATTGTGATGAGGATggggtgtaggtgtgtgtgggcTGGAAGATTTGTCCCGTGTATGGCTGCTGGGGCTGCATCATTCCTGGAGGAGTGTAACCCATGGGCTGGGAGTAGTCATATTGACCACCGTATGGCTTGTCGTAGGGGGTTTCAGCGTTGGGGTAGCCATGGCCTGCCTGGCTTTGGTCATCTACACTGTAGCTGGACTGGTAAAAGTCTGTGTTGAAACTGTCAAACCCTGCCATCTCTCACACTGTGATGTTTGACAAATCTATGCAGAACGCTGCCAACTTGGTTGTGGTTGCTGGTTGCTAC

Function

symbol description
yipf5 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; regulation of ER to Golgi vesicle-mediated transport; and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Orthologous to human YIPF5 (Yip1 domain family member 5).

NR:

description
PREDICTED: protein YIPF5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224426 True 407 TUCP 0.51 3 15956480 15958135

Neighbor

gene id symbol gene type direction distance location
LOC120543959 arhgap26 coding upstream 120078 15743908 ~ 15836402 (+)
ndfip1l ndfip1 coding upstream 338308 15609829 ~ 15618172 (+)
endou2 LOC103369442,LOC100704795,LOC101484325 coding upstream 347583 15602709 ~ 15608897 (+)
rnf14 rnf14 coding upstream 355573 15593047 ~ 15600907 (+)
hspa4a LOC104917784,LOC103369466,LOC102308243,LOC101485811,LOC100690112 coding upstream 364620 15570547 ~ 15591860 (+)
kctd16b kctd16,LOC102776840 coding downstream 14783 15972918 ~ 16045698 (+)
rbm27 rbm27,LOC102800242 coding downstream 272489 16230624 ~ 16250821 (+)
pou4f3 pou4f3 coding downstream 295621 16253756 ~ 16260084 (+)
drd1b LOC104941181,LOC103361782 coding downstream 370990 16329125 ~ 16334140 (+)
adad2 NA coding downstream 712084 16670219 ~ 16681522 (+)
G165554 NA non-coding upstream 4787 15920470 ~ 15951693 (+)
G165543 NA non-coding upstream 107550 15808605 ~ 15848930 (+)
G165539 fgf1,LOC104966015 non-coding upstream 221111 15732708 ~ 15735369 (+)
G165432 LOC103369494,LOC105935670,LOC106925106 non-coding upstream 483294 15469736 ~ 15473186 (+)
G165442 NA non-coding upstream 523348 15431449 ~ 15433132 (+)
LOC120575633 NA non-coding downstream 172577 16130712 ~ 16132714 (+)
G165618 lars non-coding downstream 247700 16205835 ~ 16209905 (+)
G165662 NA non-coding downstream 369263 16327398 ~ 16329010 (+)
G165679 NA non-coding downstream 388661 16346796 ~ 16347096 (+)
G165680 NA non-coding downstream 390177 16348312 ~ 16348587 (+)
gabra6b NA other upstream 1055477 14862661 ~ 14901003 (+)
G165043 ddx46,LOC102797024 other upstream 3135771 12817231 ~ 12820709 (+)
G165033 NA other upstream 3159180 12794560 ~ 12797300 (+)
lcp2a lcp2 other upstream 3488166 12450762 ~ 12468314 (+)
LOC120575591 LOC104924162 other upstream 3609428 12329957 ~ 12347052 (+)
G165702 NA other downstream 627007 16585142 ~ 16626346 (+)
LOC120544324 NA other downstream 778529 16736664 ~ 16754289 (+)
LOC120544384 LOC100708800,LOC102793722,LOC102204659,LOC102301331,LOC103375969,LOC101471849,LOC101156840 other downstream 851751 16809886 ~ 16837171 (+)
fgf13b LOC104966980,LOC101465170,LOC103376159,LOC100710934,LOC108238960,LOC103138886,LOC103475676,LOC107084161,LOC106524025 other downstream 1037623 16995758 ~ 17020416 (+)
ubtd2 ubtd2,LOC102788971,LOC100712015 other downstream 1187341 17145476 ~ 17160145 (+)

Expression


Co-expression Network