G165700 (LOC104966060,LOC103373001,LOC103138635,LOC106527390,LOC108238886)


Basic Information

Item Value
gene id G165700
gene name LOC104966060,LOC103373001,LOC103138635,LOC106527390,LOC108238886
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 16540964 ~ 16611002 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU224593
GCACAGGTCAcagcttgttttattttgaattcaAACCAAGTTAAGAGTGACAAGGATGCACACTGATAAATTACACCAGGTATCGCTACATATCAACTAACAACATCACAATATCTCATAAAAGCACTCCTGACAACAGATCCAAcgttacaaaatgaaaaataacattacAGGAACAAAACTCGGCTGCAGTTGAAGCCCATCgataaacataacaaaacactgCAGAAAATAACAGCAAGAGTTTCGGCAAGAGATGTTGATATGCACAGTATTTCCTTTCCCATCTGTAACATTGTGTTGAATGGAGCTACAGTACATGTACAAGACTGAAGCAATAGGTAAGTAAGTCTGTAAAAATCTAAAAGAAAAAACTCCCAATAATAAGCTTCTACAatgtatacacacaaaaaactaGCTTGACCGCACAGTTGTATGTACAGCTTGGGTGACTAGGGGATTTCTGGATTTAAAATGTATAGCACAGCACACTGAAATATCACTGTATATGAGCTATCAAACAGCCACGATGGGAAAATTCATTCAATCCACTAAAGACATGTTGCGGATGTGGACATTGGCGTGGACACTGGCGTCAAACTTTCCTCAGACAGTACGGCTGAaattttgtgtttaaaaatgtgttacagCAATATAAGACTATACTAACAATTTTCGGGTTGGAatatgaaggtgtgtgtgtgtgtactccaCTAAGCttattctctctgtctctctacctgttcAGGAAATCAGTAAAATACACTTGAGTAATCACACAGTATACGGcaatgtatatatgtgtgtgtgtgtgtgcgcgtgtgtggcgtgtgtgtgtgtgtgcatgtttttgtgtcgtgtgtgtcggacgtgtgtgtgcgtgtttttgtgttgtgtgtgtcggACGTGCTTGGGGATACGCTGTTAGGACAAGAAAGAAAAGTGGCTGTGAATGAATATACATAAACTACACAAAGATTCCCAAATTCAGAAAGAGGAAGCATGAAATTCAGCATTGACTCGTGCCTTTGTACAAAGATAATCACATACAAATCATTCatactttacagtaaaaaataaatatatcaacacaatcaataaataataaattagagGAAAGGACTAAAGACATGGTAACAAGAGAgcagaccgtgtgtgtgtgtgtgtatacgtgtgtgtgtatcagcaGATGATGATCCCAAGAGAGCAAAGGTTCAATGGGAAATGCTGCTCGATAAGAGAATGAGCACATAAATGGACAGTCAAGGTAAATCAGAACATGACCTAgcatgtgcttgtgtgttcTTATGTCTGCATGCATGTTTTCACTCTATATTGGCTTTATATATGTAGCTGATGTGGAAATATGTGTCTCTTTTGTCTATATCTTTAAATATTCAcctacatgtttgtgtgtggatgCATCTATATCTGCCTGTGTCTGTATTTCTTcatgtctgcatgtgtttaCAACAACCTTTAACCGTTCAGCTAACTCAGTGGCCCTCGTCGCTCGGAGGTTTAGCGTCGTGCTGCTGCCCCGCCGCCCCTCCAGGCAGCCAGGGGGAGACAGAGTGCGAGGTGGTCTGCTTGGCCATGCTGTAGTGGCTGATCACTGTGTAGAAACGGCCCCTTGAGTTGGCATCCTGAGCAGCGTAGTAGGCCTCCAAAGAGGCTGGGATACACCGCTTGTGCTTGTAAATGAATCCATCTGGGCAGGCGTGGTCATAGGTGAAGGCCTTATAAACCACCAAGAACACGATACAGGCGAGGAAGGCCAGGGCCAGGATGATCAGAATAGTCACCTTAAGTCTCTCAGACACCCCGTCAGTAAAGCTGATGTTGAACTCCTCCACCTTGGGAACCTTCAgcctcttcttctctgtctggTACTCCGTGCGAGTTTTTACCACCACCTTGTCAGGTGCTTGGCTCTGGAGACTGCCGACATCCAGTGGAGTGATGAGAGGCACATTCTGAAAGCCGTCCTCCACGCTCACAGGTTTGGCCCCTTTGTCTTGAAGATTACTCCCCAGTTTCACCATCTTTCACCGCCCTTATATATATTCCCTTTATTTCCCTGAAGACTGCTCAGCTGACCGTCCTTGTGTGTCCGTCTCCTGTGTGCTGCGGCAGTGTTTGTGTCTGACAGAGGCGGAGGGGAGCACGGATGAGGAGCAGGTGAGGCTGGAGGCTGCTCTGCGGTGTCGCTGCTGCTGAGGATGCGGGAAAGCAACGCTGCACCGCCGGAGACAAGCTGGATGTCTGGCGGCAGATTTCCTACCAGCAGGCAGCCCAACCCCCTAATCCAAACACAGCCTCCTCTTCGCCGCGCTGCTACACCCCAGCCGCTGGA
>TU224595
GCACAGGTCAcagcttgttttattttgaattcaAACCAAGTTAAGAGTGACAAGGATGCACACTGATAAATTACACCAGGTATCGCTACATATCAACTAACAACATCACAATATCTCATAAAAGCACTCCTGACAACAGATCCAAcgttacaaaatgaaaaataacattacAGGAACAAAACTCGGCTGCAGTTGAAGCCCATCgataaacataacaaaacactgCAGAAAATAACAGCAAGAGTTTCGGCAAGAGATGTTGATATGCACAGTATTTCCTTTCCCATCTGTAACATTGTGTTGAATGGAGCTACAGTACATGTACAAGACTGAAGCAATAGGTAAGTAAGTCTGTAAAAATCTAAAAGAAAAAACTCCCAATAATAAGCTTCTACAatgtatacacacaaaaaactaGCTTGACCGCACAGTTGTATGTACAGCTTGGGTGACTAGGGGATTTCTGGATTTAAAATGTATAGCACAGCACACTGAAATATCACTGTATATGAGCTATCAAACAGCCACGATGGGAAAATTCATTCAATCCACTAAAGACATGTTGCGGATGTGGACATTGGCGTGGACACTGGCGTCAAACTTTCCTCAGACAGTACGGCTGAaattttgtgtttaaaaatgtgttacagCAATATAAGACTATACTAACAATTTTCGGGTTGGAatatgaaggtgtgtgtgtgtgtactccaCTAAGCttattctctctgtctctctacctgttcAGGAAATCAGTAAAATACACTTGAGTAATCACACAGTATACGGcaatgtatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtggg

Function

NR:

description
PREDICTED: neuron-specific protein family member 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224593 True 2356 lncRNA 0.45 5 16540964 16577790
TU224595 False 878 lncRNA 0.39 3 16540964 16611002

Neighbor

gene id symbol gene type direction distance location
drd1b LOC104941181,LOC103361782 coding upstream 206824 16329125 ~ 16334140 (+)
pou4f3 pou4f3 coding upstream 280880 16253756 ~ 16260084 (+)
rbm27 rbm27,LOC102800242 coding upstream 290143 16230624 ~ 16250821 (+)
kctd16b kctd16,LOC102776840 coding upstream 495266 15972918 ~ 16045698 (+)
LOC120543959 arhgap26 coding upstream 704562 15743908 ~ 15836402 (+)
adad2 NA coding downstream 59217 16670219 ~ 16681522 (+)
snx12 snx12,LOC107386733,LOC106527386,LOC107084209,LOC102223214 coding downstream 143408 16754410 ~ 16762982 (+)
slc7a3a slc7a3,LOC104966995,LOC106527388,LOC108238988 coding downstream 159435 16770437 ~ 16785096 (+)
rab38c LOC104935089,LOC104966993,LOC103375967,LOC100708531 coding downstream 189597 16800599 ~ 16805336 (+)
LOC120544386 LOC105417437,LOC106917148 coding downstream 247013 16858015 ~ 16864033 (+)
LOC120544700 NA non-coding upstream 32787 16406852 ~ 16508177 (+)
G165696 NA non-coding upstream 77825 16462868 ~ 16463139 (+)
G165690 NA non-coding upstream 151955 16388716 ~ 16389009 (+)
G165683 NA non-coding upstream 182571 16357867 ~ 16358393 (+)
G165681 NA non-coding upstream 183827 16355033 ~ 16357137 (+)
G165729 NA non-coding downstream 89671 16700673 ~ 16719267 (+)
G165764 dpp3 non-coding downstream 253143 16864145 ~ 16865660 (+)
LOC120544389 NA non-coding downstream 274986 16885988 ~ 16890336 (+)
G165849 NA non-coding downstream 306857 16917859 ~ 16921242 (+)
G165865 LOC103376153,LOC104933044,LOC106917154,LOC105916235,LOC103138852 non-coding downstream 337668 16948670 ~ 16955280 (+)
G165556 yipf5,LOC102777143 other upstream 582829 15956480 ~ 15958135 (+)
gabra6b NA other upstream 1639961 14862661 ~ 14901003 (+)
G165043 ddx46,LOC102797024 other upstream 3720255 12817231 ~ 12820709 (+)
G165033 NA other upstream 3743664 12794560 ~ 12797300 (+)
lcp2a lcp2 other upstream 4072650 12450762 ~ 12468314 (+)
LOC120544324 NA other downstream 125662 16736664 ~ 16754289 (+)
LOC120544384 LOC100708800,LOC102793722,LOC102204659,LOC102301331,LOC103375969,LOC101471849,LOC101156840 other downstream 198884 16809886 ~ 16837171 (+)
fgf13b LOC104966980,LOC101465170,LOC103376159,LOC100710934,LOC108238960,LOC103138886,LOC103475676,LOC107084161,LOC106524025 other downstream 384756 16995758 ~ 17020416 (+)
ubtd2 ubtd2,LOC102788971,LOC100712015 other downstream 534474 17145476 ~ 17160145 (+)
LOC120544493 LOC103370065,LOC101073234,LOC102787924,LOC100696184 other downstream 587695 17198697 ~ 17285342 (+)

Expression


Co-expression Network