XLOC_004878 (ndst2b)


Basic Information

Item Value
gene id XLOC_004878
gene name ndst2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 35203091 ~ 35339564 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009623
AAAACCCTCCCCGCGCGGCCGCCAGTTCAGCAGCTCTCGAGTCTCGCTCTCTCAGTCGGCGCGGGCTGGAGATGAAGATGGCGGAGAGGCAGTGCGAGATGCGTTTACGAAGCATCAAAGTTCTTTCCGCGGCGTTCTTTTCATTCGGATTCTAGAAACCGGCACCGAAAGCAACCATTTAAAACGAACTGTTCTTCGCTGGACTCGAACTTTGCTCCACATCCCAAGTCAATCCCTGTACATGACGAGCCAGTGGGCAAACTGATAACACCGGAAAAtctgtccacacggagAATGAAGAGGAGGTTCTGCTGGATGACGTCTCACTCACGCCTTGTTTATTCAAGCAGATGCATGAAGTGCCAAAAGGTGTTTATCAGAAGCAAAACcactaatgaacaaacaaatgaattacACATGATGCCTCCGGCTGCTTGTGCATAGGGTCGTTGTATGGACGGGAGGAGTGTGATACAAAAAGAGAGACACTGGGGCGACGATTTCGTCGCAGGCTATGGGGGCCATGGTGACCTAGATTCAGTGATCGTTTCCTGGCAGGGCAACTCCATTCCCATCTAATCCCTGCTCTCTTTTATTTCTACCTCCCTTCCAGAGTGAGGCGCCACCCTCTCTCTGTCCCTACCACCTGCTTTGCCAAGACAGCTATGGCTGGAGTAAGAAAGTTGGCGCGAGTCATCAGGCACCAAGGTCTCCATCGCCTGATCCTTGCACTCATCCTCTTCTGTCTGCTTTCTATGGCCTACCTAGCTTATCATGTCAGTGCTGGACACAAGATCAAGGAAGCCCCTCTGCCGCTGCCCCTAGGAGACTGTGTAGCTTCATCAGTCATTGGTGGTGGGCAAAGGACTCCACTGTTCCTGCCATCACAGATCAGCCAGCGCCGACACTCAGCAAAGACGGTGGACACCTCTCGGACAGAGCCTGTGGTCTTACTCTTTGTGGAAAGCATCTACTCACAACTCGGACAAGAAATTGTTGCCATTTTAGAGTCAAGCCGATTTCATTATCGCACTGAAATTGCACCGGGTAAAGGAGACATGCCACCTCTGGCTTGGCGAGGCCGTGGCCGATACTCACTCATCATCTATGAGAACCTGCTCAAGTATGTCAACTTGGACTCGTGGAACCGCCAGTTGCTGGATAAATACTGCCAAGACTATGGAGTGGGAATCATTGGCTTTTATAGGGCGAATGAAAACTCTCCATCCAGTGCTCAGCTCCGAGGCTTCCCCCTGTTCTTGCGTTCAAACTTGCCACTTTGGGATTACCGAGTCAGCCCTGCCGCACCGCTGCTCTACATCACCAAACCTAATGAGCTGGAGCCGGGCCCTCTACCTGCAGATAACTGGACCACCTTCCTCTCCAACCACAGCACGTATGAGCCTGTGCTGCTAGCGAGCCCCAAGCCTGCAGAAGCCAATCAGCTCCCAACACACTCACACCAACAGAGAGCACTGCTGGCTACGGTTGTGCAGGATTTAGGTCTTCACGATGGGATCCAGCGGGTGTTCTTTGGTGGTAGCTTGTCTTTTTGGCTGCACAAACTGCTCTTTGTGGATGCTGTGGGATATTTAACTGGAAGGCGGCTCAGCCTCTCGTTGGACAGATTTTTGCTGGTGGACGTGGATGACATCTTTGTTGGGAAGGAGGGGACGCGGATGAAAGTGTCAGATGTTGAGGCTCTGCTTCACACACAGAATAAACTTCGTTCTCTGGTTCCCAATTTCACCTTCAACTTGGGATTCTCTGGCAAGTTTTTTCATACAGGTACAGATGAAGAAGACGAGGGTGACGACACGCTGCTACGTCACCGGCAGGAGTTTTGGTGGTTTCCGCACATGTGGAGTCACATGCAGCCTCATCTCTTCCACAACGTCAGCGTGCTGGCAGAACAAATGAGACTTAATAGACAGTTTGCACAGGAGCATGGGATCCCCACAGACATGGGTTACGCTGTAGCCCCACATCACTCAGGTGTGTATCCTGTGCACAGTCAGCTTTATGAGGCCTGGAAGAGTGTTTGGGGCATCAAGGTGACGAGCACAGAGGAATATCCTCATCTCAGGCCTGCCCGCTACCGCAGGGGCTTCATACACAATGGCATACAGGTTCTCCCCCGGCAGACCTGTGGGCTTTTCACACACACCATCTTCTATAAGGATTATCCTGGTGGCCCTCAGGAGCTGGACAAAAGCATTCGTGGAGGGGAGCTGTTTCTCACAGTGCTGCTCAATCCGGTTAGTATATTCATGACTCACCTGTCTAACTATGGCAATGACCGGCTGGGTCTGTACACCTTCGAGTCGCTGGTGAGGTTTGTGCAGTGCTGGACTCACCTGCGCCTGCAGACGCTTCCTCCTGTCAGACTCGCTCACAAATACTTCCAGATTTTCCCTGATGAGAGAGACCCCTTGTGGCAGAATCCATGTCACGACAAGAGACACAAAGACATCTGGTCCAAAGAGAAGACCTGCGACAGACTGCCCAAATTCCTAGTGATTGGGCCACAGAAGACCGGAACTACAGCCCTGCACTCGTTTCTCTCTCTTCATCCTGCCATCAGCAGCAGTTACCCCAGCCCCATCACTTTTGAGGAGGTGCAGTTCTTCAGCGGACCAAACTACCAGCGCGGCATCGACTGGTATATGGATTTTTTCCCTGTACCTTCGAATGTAAGCACAGACTTCTTGTTTGAGAAGAGCGCCAACTACTTTGACACCGAAACCGCCCCGAAGAGAGCAGCTGCCCTGCTACCAAGAGCCAAAATCATCTCTATTCTTATCAACCCTGCTGACCGGGCATATTCCTGGTACCAGCATCAGAGGGCTCATCAGGACCCTGTGGCGCTGAACCACACATTTGATGAGGTGGTTTCTGCTGCTCCGTCATCTCCTGCAAGCCTGCTGTCTCTGCACCGTCGCTGCCTGCAGCCTGGAGCCTACAGCAGCCATCTGGAGCGCTGGCTACACCACTACCAGCCCAGCCAGCTGCTGATTGTGGATGGTGTGCAGCTGCGCTCCGGTCCTGCTCAGGTGATGGATGCTATTCAGAAGTTCCTGGGAGTCACACCGTACTTCAACTACACACAGGCTCTGATGTTTGATGAGAGTAAAGGTTTCTGGTGTCAGAAACTAGAGGCAGGACGCTCTCGCTGTCTGGGAAAAAGCAAAGGAAGGAAATATCCCGACATGAGCCTTGAGTCCAGGGCATTTCTGTCCGAGTATTACCGTGAGCAGAACGTGGAGTTACTCAGAATGCTGAAACGTCTGGGTCAACCTCTGCCCGTCTGGCTCAGAGATGAACTGCACAATGCCAGTTGGAGCTGAGAAACACCAACAGTAGCAGGAGACGCACGGCAGTACCACGCTGCTCCTCACAGGAGAACTCGGGGCCCATGTGTGGCAGGTGCCAAAAGAGGACCGACCGGCTCGCCCTCCAATAATCCACACGGCCTCTGACCCAACAGACGGCCCGATGGCGCTGTCACAGTCTGAACGAAGCCCTCCGAGTCAGACGAGAAGCTTCTCAGCCGATGTTCATGAAAACACGGATATGGAAATGGGAACGACCTCATTAAAAAGACTTCCAGAGTCCATTATGAAACGgctgttttaaatgcaaatatagtCTTCTAGGAAGAGAAAGTGA
>TCONS_00009624
taaaATGTTCCATACAGGCTAGTATaatgaaaattaaaacattttgtaatgGTTACAGAAGGCAACCCAGTTTTACACATAATTATCAGCTCTGGATCACAAATGCCAGACTTTAAGGTTGATCAGGTTGTGATGGAGTCTATGCCCATCATTCACCTGCAACTGTCAAAAAATGGCTCTGAATGTGTCAATAAGGTCAACAAATCTAGGCAAGATTTATGTAGTGTGTTCTACCCATAATGTATACAAGTTagttctgattctgattcttcaATTTTTTGTTCCTTTCAGAATGAAGAGGAGGTTCTGCTGGATGACGTCTCACTCACGCCTTGTTTATTCAAGCAGATGCATGAAGTGCCAAAAGGTGTTTATCAGAAGCAAAACcactaatgaacaaacaaatgaattacACATGATGCCTCCGGCTGCTTGTGCATAGGGTCGTTGTATGGACGGGAGGAGTGTGATACAAAAAGAGAGACACTGGGGCGACGATTTCGTCGCAGGCTATGGGGGCCATGGTGACCTAGATTCAGTGATCGTTTCCTGGCAGGGCAACTCCATTCCCATCTAATCCCTGCTCTCTTTTATTTCTACCTCCCTTCCAGAGTGAGGCGCCACCCTCTCTCTGTCCCTACCACCTGCTTTGCCAAGACAGCTATGGCTGGAGTAAGAAAGTTGGCGCGAGTCATCAGGCACCAAGGTCTCCATCGCCTGATCCTTGCACTCATCCTCTTCTGTCTGCTTTCTATGGCCTACCTAGCTTATCATGTCAGTGCTGGACACAAGATCAAGGAAGCCCCTCTGCCGCTGCCCCTAGGAGACTGTGTAGCTTCATCAGTCATTGGTGGTGGGCAAAGGACTCCACTGTTCCTGCCATCACAGATCAGCCAGCGCCGACACTCAGCAAAGACGGTGGACACCTCTCGGACAGAGCCTGTGGTCTTACTCTTTGTGGAAAGCATCTACTCACAACTCGGACAAGAAATTGTTGCCATTTTAGAGTCAAGCCGATTTCATTATCGCACTGAAATTGCACCGGGTAAAGGAGACATGCCACCTCTGGCTTGGCGAGGCCGTGGCCGATACTCACTCATCATCTATGAGAACCTGCTCAAGTATGTCAACTTGGACTCGTGGAACCGCCAGTTGCTGGATAAATACTGCCAAGACTATGGAGTGGGAATCATTGGCTTTTATAGGGCGAATGAAAACTCTCCATCCAGTGCTCAGCTCCGAGGCTTCCCCCTGTTCTTGCGTTCAAACTTGCCACTTTGGGATTACCGAGTCAGCCCTGCCGCACCGCTGCTCTACATCACCAAACCTAATGAGCTGGAGCCGGGCCCTCTACCTGCAGATAACTGGACCACCTTCCTCTCCAACCACAGCACGTATGAGCCTGTGCTGCTAGCGAGCCCCAAGCCTGCAGAAGCCAATCAGCTCCCAACACACTCACACCAACAGAGAGCACTGCTGGCTACGGTTGTGCAGGATTTAGGTCTTCACGATGGGATCCAGCGGGTGTTCTTTGGTGGTAGCTTGTCTTTTTGGCTGCACAAACTGCTCTTTGTGGATGCTGTGGGATATTTAACTGGAAGGCGGCTCAGCCTCTCGTTGGACAGATTTTTGCTGGTGGACGTGGATGACATCTTTGTTGGGAAGGAGGGGACGCGGATGAAAGTGTCAGATGTTGAGGCTCTGCTTCACACACAGAATAAACTTCGTTCTCTGGTTCCCAATTTCACCTTCAACTTGGGATTCTCTGGCAAGTTTTTTCATACAGGTACAGATGAAGAAGACGAGGGTGACGACACGCTGCTACGTCACCGGCAGGAGTTTTGGTGGTTTCCGCACATGTGGAGTCACATGCAGCCTCATCTCTTCCACAACGTCAGCGTGCTGGCAGAACAAATGAGACTTAATAGACAGTTTGCACAGGAGCATGGGATCCCCACAGACATGGGTTACGCTGTAGCCCCACATCACTCAGGTGTGTATCCTGTGCACAGTCAGCTTTATGAGGCCTGGAAGAGTGTTTGGGGCATCAAGGTGACGAGCACAGAGGAATATCCTCATCTCAGGCCTGCCCGCTACCGCAGGGGCTTCATACACAATGGCATACAGGTTCTCCCCCGGCAGACCTGTGGGCTTTTCACACACACCATCTTCTATAAGGATTATCCTGGTGGCCCTCAGGAGCTGGACAAAAGCATTCGTGGAGGGGAGCTGTTTCTCACAGTGCTGCTCAATCCGGTTAGTATATTCATGACTCACCTGTCTAACTATGGCAATGACCGGCTGGGTCTGTACACCTTCGAGTCGCTGGTGAGGTTTGTGCAGTGCTGGACTCACCTGCGCCTGCAGACGCTTCCTCCTGTCAGACTCGCTCACAAATACTTCCAGATTTTCCCTGATGAGAGAGACCCCTTGTGGCAGAATCCATGTCACGACAAGAGACACAAAGACATCTGGTCCAAAGAGAAGACCTGCGACAGACTGCCCAAATTCCTAGTGATTGGGCCACAGAAGACCGGAACTACAGCCCTGCACTCGTTTCTCTCTCTTCATCCTGCCATCAGCAGCAGTTACCCCAGCCCCATCACTTTTGAGGAGGTGCAGTTCTTCAGCGGACCAAACTACCAGCGCGGCATCGACTGGTATATGGATTTTTTCCCTGTACCTTCGAATGTAAGCACAGACTTCTTGTTTGAGAAGAGCGCCAACTACTTTGACACCGAAACCGCCCCGAAGAGAGCAGCTGCCCTGCTACCAAGAGCCAAAATCATCTCTATTCTTATCAACCCTGCTGACCGGGCATATTCCTGGTACCAGCATCAGAGGGCTCATCAGGACCCTGTGGCGCTGAACCACACATTTGATGAGGTGGTTTCTGCTGCTCCGTCATCTCCTGCAAGCCTGCTGTCTCTGCACCGTCGCTGCCTGCAGCCTGGAGCCTACAGCAGCCATCTGGAGCGCTGGCTACACCACTACCAGCCCAGCCAGCTGCTGATTGTGGATGGTGTGCAGCTGCGCTCCGGTCCTGCTCAGGTGATGGATGCTATTCAGAAGTTCCTGGGAGTCACACCGTACTTCAACTACACACAGGCTCTGATGTTTGATGAGAGTAAAGGTTTCTGGTGTCAGAAACTAGAGGCAGGACGCTCTCGCTGTCTGGGAAAAAGCAAAGGAAGGAAATATCCCGACATGAGCCTTGAGTCCAGGGCATTTCTGTCCGAGTATTACCGTGAGCAGAACGTGGAGTTACTCAGAATGCTGAAACGTCTGGGTCAACCTCTGCCCGTCTGGCTCAGAGATGAACTGCACAATGCCAGTTGGAGCTGA

Function

symbol description
ndst2b Predicted to enable [heparan sulfate]-glucosamine N-sulfotransferase activity and hydrolase activity. Predicted to be involved in heparin biosynthetic process. Predicted to be located in Golgi membrane. Is expressed in alar plate midbrain region; brain; midbrain neural rod; optic tectum; and rhombomere. Orthologous to human NDST2 (N-deacetylase and N-sulfotransferase 2).

GO:

id name namespace
GO:0008146 sulfotransferase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100430-2 Predicted to enable [heparan sulfate]-glucosamine N-sulfotransferase activity and hydrolase activity. Predicted to be involved in heparin biosynthetic process. Predicted to be located in Golgi membrane. Is expressed in alar plate midbrain region; brain; midbrain neural rod; optic tectum; and rhombomere. Orthologous to human NDST2 (N-deacetylase and N-sulfotransferase 2).

Ensembl:

ensembl_id ENSDARG00000060678

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009623 False 3669 mRNA 0.52 15 35203091 35339564
TCONS_00009624 True 3345 mRNA 0.51 13 35316233 35339242

Neighbor

gene id symbol gene type direction distance location
XLOC_004877 si:ch73-127m5.1 coding upstream 8291 35119762 ~ 35194800 (+)
XLOC_004876 CU459210.1 coding upstream 95093 35106575 ~ 35107998 (+)
XLOC_004875 syt15 coding upstream 118288 35067863 ~ 35084803 (+)
XLOC_004874 NA coding upstream 143483 35058147 ~ 35059608 (+)
XLOC_004873 timm23a coding upstream 151650 35046704 ~ 35051441 (+)
XLOC_004879 NA coding downstream 6261 35345825 ~ 35348411 (+)
XLOC_004880 chmp6b coding downstream 248407 35587971 ~ 35707358 (+)
XLOC_004881 FO681473.1 coding downstream 272134 35611698 ~ 35611814 (+)
XLOC_004882 baiap2b coding downstream 310757 35650321 ~ 35653051 (+)
XLOC_004883 baiap2b coding downstream 315185 35654749 ~ 35689239 (+)
XLOC_004869 CR854979.1 non-coding upstream 321196 34881777 ~ 34881895 (+)
XLOC_004867 NA non-coding upstream 356249 34844442 ~ 34846842 (+)
XLOC_004863 NA non-coding upstream 732628 34459669 ~ 34470463 (+)
XLOC_004884 NA non-coding downstream 365569 35705133 ~ 35706948 (+)
XLOC_004885 NA non-coding downstream 498724 35838288 ~ 35842371 (+)
XLOC_004886 NA non-coding downstream 581613 35921177 ~ 35925412 (+)

Expression


Co-expression Network