sar1b (sar1b,LOC107713617,LOC107603246,LOC102795722)


Basic Information

Item Value
gene id sar1b
gene name sar1b,LOC107713617,LOC107603246,LOC102795722
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 12865247 ~ 12874039 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039776766.1
TGGGCAGGTTTTTGGGGAGTTGCTGGACAGCCATTGCAGTGTCGTGGCTCAGTAACAAAACACGAAAAAGGAGAGGAAGACCTGGCATTTCGCAGGCTCTCTTTTTGACCGGGAGACCAATTTACATGACTAAAAGAGCAAACACACTCGGTAAATTATTCTACACATAAGTAAAGGgaTTCAACAGCTCCGGATATGTCATTCATATTGGATTGGATTTCGATAGGTTTCAATAGCGTACTACAGTTGTTAGGACTGTATAAGAAATCGGGCAAGTTAGTATTTCTTGGCCTGGACAATGCTGGCAAAACGACGCTACTGCACATGCTTAAAGATGACAGATTGGGACAGCATGTGCCAACTTTACATCCAACCTCGGAAGAGCTGACGATTGCTGGCATGACTTTTACCACCTTCGACCTTGGAGGCCACGCAcaagCCCGCAGAGTGTGGAAAAACTACCTCCCTGCCATTAATGGCATTGTCTTCCTTGTGGATTGTGCAGATGTCACCAGATTGGCTGAATCAAAAGCAGAACTTGATGCATTAATGACGGACGAGACTATCGGAAACGTGCCTATCCTGATCCTGGGCAACAAGATCGACAGACCAGAGGCCATCAGCGAAGAGAAGCTGAGAGAACTCTTTGGATTGTACGGACAGACGACAGGCAAGGGCACCATTGCCATTAAGGAGCTGAACACAAGACCACTGGAAGTGTTCATGTGCAGTGTGTTGAAGAGGCAGGGCTACGGTGAGGGCTTCCGCTGGCTCTCCCAGTATATCGACTAAAGCAGTCAAGCCCTGtaacacaccaccaccaccaccaccatcaggGGGGCGCTAAACCCAACCACTCAAGACGCCCACCGTTGCCACCAGTACCATCATACTCAGCCCCATGTTTGGTTAAACAAGTCTGCCTCCACCTTCAGAGAAACCAGTACAACTTGATCCCAATAGACTTATATTGGTCGAACATTTGGTTCCGCACTTACAGAATTCATACCTgtacgcgcgcgcacacactcgtttccatctctgtctttttctacGAGAGTAATATAGCATTGGTTCCACAGCAAATTCAAACGGATAAATCTTTTCTATGTTGTGTCTGTCGTTTGctgccctctctccctcccttcctgccATCTGTTGAGTGTGATGATAGATGCATTATAACTGTAAATCTGTACATGATTCCATTGGTATATCAACAATCCCTGATGCCTCTTCCCCCTCTTCAACTTATTTGGAGGAATGAAAGAGAGCAACATAGTTGTATACATTGcagtacacttttttttttttttaacagtaaagacattcattcaacattgtATTTAATCAACACGTTTTGGTTtgtcgttttttcttttttcttttgttttttttacaaactgtGGCCACATATACAGCCCTTACTATAGACTTATAGACGGGTGGCTGTTTCACCCATTTATTAAAATGGACCAGTGCATTTATCTTAGCGTATCAGAAATTACATCCATTTCTTTAGGGTTACTTGTAAGTTAAATACTTTACACTAGTCCCAGACTTTTATCTTGTGGGCATAGTGGCATTGAATGGATCCAAGTAAGCTTGGgctcccttttttttaaaagagaagcATGGGTGGTAGTATAGCAGATGGGAGAAGAATTTTAATAGAAAATACGGGCTATAACCCTGGCAAGGTTTGATAAAATCGTTTAGATAGCGCAATGGTCAGTTGATGCGAAGAAaactatttaaatgaaaattggTGATAGCTTGATAATAACAGTAATAGATAAAGGGAGGAATAAACAGATGGTTTAAACATCTAGAAATTGTCAATGTAAGAAGTCCATCCTAGAGATATATTTTCTGGCACAGACCTTTGTACAGGGTGAATCTAGCAACCAAGGGTAGATAACAGAGGGCACAGTCCCACAGTGGGAATAGGTAGATAGGCCTAAGAAGCCTCTAAGAAAGGGACCATAAATATATGAAATGTACATGAACATCGTACATGGATTTTGCATTTATAAGTGGTATCCTTTGTTCTATGTGCATTACCAGAAACTATTATGCATGCCTTGttattttgacttttaataACCATTATTCCAGAGAGTACAACAGGAGGGGAAAATATGCCAAAATTTACAATGAGAGCTgattgtcatgtttttttattttaacggAAACAATTGAATTGCACGTaatacacactttttttgtcCCTGTCCCTTTGTGTCTCTTTCATTCCCTCATGACTACGTGATGAGCTGTTCCAACAAGGGCGGGAATGCTATTTTTGTTTGCAtcatgaaaatgtaataaatgtttTCAATGAATAACAGGCTTTAACATTGA
>XM_039776767.1
CTGGGCAGGTTTTTGGGGAGTTGCTGGACAGCCATTGCAGTGTCGTGGCTCAGTAACAAAACACGAAAAAGGAGAGGAAGACCTGGCATTTCGCAGGCTCTCTTTTTGACCGGGAGACCAATTTACATGACTAAAAGAGCAAACACACTCGGTAAATTATTCTACACATAAGTAAAGGttttcttttgcCAACGCGGAACCTGTCGGAGACCAACCATCAATGTAACGTTAAGAAGgaTTCAACAGCTCCGGATATGTCATTCATATTGGATTGGATTTCGATAGGTTTCAATAGCGTACTACAGTTGTTAGGACTGTATAAGAAATCGGGCAAGTTAGTATTTCTTGGCCTGGACAATGCTGGCAAAACGACGCTACTGCACATGCTTAAAGATGACAGATTGGGACAGCATGTGCCAACTTTACATCCAACCTCGGAAGAGCTGACGATTGCTGGCATGACTTTTACCACCTTCGACCTTGGAGGCCACGCAcaagCCCGCAGAGTGTGGAAAAACTACCTCCCTGCCATTAATGGCATTGTCTTCCTTGTGGATTGTGCAGATGTCACCAGATTGGCTGAATCAAAAGCAGAACTTGATGCATTAATGACGGACGAGACTATCGGAAACGTGCCTATCCTGATCCTGGGCAACAAGATCGACAGACCAGAGGCCATCAGCGAAGAGAAGCTGAGAGAACTCTTTGGATTGTACGGACAGACGACAGGCAAGGGCACCATTGCCATTAAGGAGCTGAACACAAGACCACTGGAAGTGTTCATGTGCAGTGTGTTGAAGAGGCAGGGCTACGGTGAGGGCTTCCGCTGGCTCTCCCAGTATATCGACTAAAGCAGTCAAGCCCTGtaacacaccaccaccaccaccaccatcaggGGGGCGCTAAACCCAACCACTCAAGACGCCCACCGTTGCCACCAGTACCATCATACTCAGCCCCATGTTTGGTTAAACAAGTCTGCCTCCACCTTCAGAGAAACCAGTACAACTTGATCCCAATAGACTTATATTGGTCGAACATTTGGTTCCGCACTTACAGAATTCATACCTgtacgcgcgcgcacacactcgtttccatctctgtctttttctacGAGAGTAATATAGCATTGGTTCCACAGCAAATTCAAACGGATAAATCTTTTCTATGTTGTGTCTGTCGTTTGctgccctctctccctcccttcctgccATCTGTTGAGTGTGATGATAGATGCATTATAACTGTAAATCTGTACATGATTCCATTGGTATATCAACAATCCCTGATGCCTCTTCCCCCTCTTCAACTTATTTGGAGGAATGAAAGAGAGCAACATAGTTGTATACATTGcagtacacttttttttttttttaacagtaaagacattcattcaacattgtATTTAATCAACACGTTTTGGTTtgtcgttttttcttttttcttttgttttttttacaaactgtGGCCACATATACAGCCCTTACTATAGACTTATAGACGGGTGGCTGTTTCACCCATTTATTAAAATGGACCAGTGCATTTATCTTAGCGTATCAGAAATTACATCCATTTCTTTAGGGTTACTTGTAAGTTAAATACTTTACACTAGTCCCAGACTTTTATCTTGTGGGCATAGTGGCATTGAATGGATCCAAGTAAGCTTGGgctcccttttttttaaaagagaagcATGGGTGGTAGTATAGCAGATGGGAGAAGAATTTTAATAGAAAATACGGGCTATAACCCTGGCAAGGTTTGATAAAATCGTTTAGATAGCGCAATGGTCAGTTGATGCGAAGAAaactatttaaatgaaaattggTGATAGCTTGATAATAACAGTAATAGATAAAGGGAGGAATAAACAGATGGTTTAAACATCTAGAAATTGTCAATGTAAGAAGTCCATCCTAGAGATATATTTTCTGGCACAGACCTTTGTACAGGGTGAATCTAGCAACCAAGGGTAGATAACAGAGGGCACAGTCCCACAGTGGGAATAGGTAGATAGGCCTAAGAAGCCTCTAAGAAAGGGACCATAAATATATGAAATGTACATGAACATCGTACATGGATTTTGCATTTATAAGTGGTATCCTTTGTTCTATGTGCATTACCAGAAACTATTATGCATGCCTTGttattttgacttttaataACCATTATTCCAGAGAGTACAACAGGAGGGGAAAATATGCCAAAATTTACAATGAGAGCTgattgtcatgtttttttattttaacggAAACAATTGAATTGCACGTaatacacactttttttgtcCCTGTCCCTTTGTGTCTCTTTCATTCCCTCATGACTACGTGATGAGCTGTTCCAACAAGGGCGGGAATGCTATTTTTGTTTGCAtcatgaaaatgtaataaatgtttTCAATGAATAACAGGCTTTAACATTGA

Function

symbol description
sar1b Predicted to enable GTPase activity. Acts upstream of or within several processes, including embryonic viscerocranium morphogenesis; intestinal cholesterol absorption; and organ growth. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Is expressed in blastomere; digestive system; nervous system; pharyngeal arch; and primary germ layer. Used to study chylomicron retention disease. Human ortholog(s) of this gene implicated in chylomicron retention disease. Orthologous to human SAR1B (secretion associated Ras related GTPase 1B).

NR:

description
PREDICTED: GTP-binding protein SAR1b

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07953 SAR1; GTP-binding protein SAR1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039776766.1 False 2364 mRNA 0.41 7 12865248 12874039
XM_039776767.1 True 2423 mRNA 0.42 8 12865247 12874039

Neighbor

gene id symbol gene type direction distance location
LOC120575626 NA coding upstream 65235 12797997 ~ 12800012 (+)
pitx1 pitx1,LOC100690583 coding upstream 104971 12747967 ~ 12760276 (+)
LOC120544088 LOC102798793,LOC104924243,LOC101475378,LOC100699679,LOC101078553,LOC103363335,LOC108238083,LOC107386699 coding upstream 232360 12611856 ~ 12632887 (+)
larp1 larp1 coding upstream 276661 12529315 ~ 12588586 (+)
foxi3a LOC105026277,LOC108269392,LOC103035522 coding upstream 391312 12471784 ~ 12473935 (+)
cdkn2aipnl cdkn2aipnl,LOC102794961 coding downstream 240844 13114883 ~ 13116904 (+)
ppp2cab ppp2ca,LOC107085894 coding downstream 270894 13144933 ~ 13155644 (+)
skp1 skp1,Skp1,SKP1 coding downstream 283043 13157082 ~ 13162735 (+)
vdac1 vdac1 coding downstream 407856 13281895 ~ 13293010 (+)
c16h5orf15 kct2,clg07h5orf15,LOC106603818,LOC106911376 coding downstream 420251 13294290 ~ 13303379 (+)
G165037 NA non-coding upstream 57154 12807784 ~ 12808093 (+)
G165000 LOC103376870 non-coding upstream 270501 12594521 ~ 12594746 (+)
G164894 NA non-coding upstream 323933 12489674 ~ 12541314 (+)
LOC120544195 NA non-coding upstream 513062 12348937 ~ 12352185 (+)
G164844 NA non-coding upstream 769423 12095579 ~ 12095824 (+)
G165062 NA non-coding downstream 44394 12918433 ~ 12930274 (+)
G165076 NA non-coding downstream 205740 13079779 ~ 13124053 (+)
G165078 NA non-coding downstream 246770 13120809 ~ 13121842 (+)
LOC120544692 NA non-coding downstream 433333 13307372 ~ 13387090 (+)
G165161 NA non-coding downstream 596979 13471018 ~ 13471231 (+)
G165043 ddx46,LOC102797024 other upstream 44538 12817231 ~ 12820709 (+)
G165033 NA other upstream 67947 12794560 ~ 12797300 (+)
lcp2a lcp2 other upstream 396933 12450762 ~ 12468314 (+)
slc25a14 slc25a14,LOC103146102,LOC106926506 other upstream 494380 12294450 ~ 12370867 (+)
gabra6b NA other downstream 1988622 14862661 ~ 14901003 (+)
G165556 yipf5,LOC102777143 other downstream 3082441 15956480 ~ 15958135 (+)
G165702 NA other downstream 3711103 16585142 ~ 16626346 (+)
LOC120544324 NA other downstream 3862625 16736664 ~ 16754289 (+)
LOC120544384 LOC100708800,LOC102793722,LOC102204659,LOC102301331,LOC103375969,LOC101471849,LOC101156840 other downstream 3935847 16809886 ~ 16837171 (+)

Expression


Co-expression Network