LOC120543678


Basic Information

Item Value
gene id LOC120543678
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 3868758 ~ 3885873 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039776835.1
CTTACCGGCACATAAAagtatttaaatattatttcCTCCACTGAGAGCACCTCCGACAGCCGACAAACCTCAAACAAAGGACAAAATCGATCCTGTTGAAGCAGTGCAGACCGAAATGAAGACAGAGAAGCAAGCTTCGTCCCTGAAACCAACCGAATCCTCCAAAACCTCCAAGCCCAATGGTCTGACAGTTTACTCCATTAAAGAAGTCAAGTCATTTTGTGACAAGACAGAAGTGACTGTCAATGGAAAAGTTACAAAGATGGATCCTGTTGGGGCTGTAAAGACCGAAAAGAAGACAGTGAAGCAAAATTCGTCCCTGAAAAAAGCCGAATCCTCCAAAACCTCCAAGGCTCCAAGTGCTGCTGTCCAGACTGGGAGgataaaaataatggacattAAAGAGTCCAAAAAACGGAACACTCACCTGGTGGTAGAGTTCAACGGCCGGATGCAGACGGTTTATGTGACAACTCGTCTTCTGGCAAACACATTTGGGATCAAAGTGGACGATGATATAGAAAGAAGACTCCGCTCTCAAATGCCGCTCACAGCAGAAGCAACATTACAAGGAAATAAAATGATATACATTAGGGTTATCCCTAACCTGGAGACAAGCGAATGTGCGAGTACGTCAGGATCAGTAGCcgagaaacaaaaacctgacGCTGATCAACAGAAGAGCAGCGAACCTGCCGAGCCCGACGGTCTGACAGTTTACTCCATTAAAGAAGTCAAGTCATTTCCTGACAAGACAGAAGTGACTGTCAATGGAAAAGTTACAAAGATGGATCCTGTTGAAGCCGTGAAGCCCAAAAAGAAGACAGAGAAGCAAGACGTGTCGCTGAAAACAGCCTTATCCTCCAAAACCTCCAAGACTACAAGTGCTGCTGTCCAGACTGGAAGGATTCAAATAATGGAAATCAAAATGACCAATAAGACAAACACTCACCTTGAGGTGGAGTTCAACGACCGGAGGCAGACGGTTTATGTGACAACTCGTCTTCTGGCAAACACGTTTGGGATCAAAGTGGACGATGATTTAGAAAGAAGACTCCGCTCTCAAATGCCAGTCACAGCAGAAGCAACATTACAAGGAAATAAAATCACAGACATTACTAACCTGGAGACAAGCGAATGTGCGAGTACGTCAGGATCAGTAGCcgagaaacaaaaacctgacaCTGGTCCAAGCGAAGCAATCCCAGCAGAGGACAGCGTCCCAGCAGAGGACAGCGTCCCAGCAGAGGACAGCGTCCCAGCAGAGGAAAAGCTGTTAAAAGTTCGGGCAGAGTTTGTAAAAAGAGTGTCTGATGCTAATCTAAACCAGCTTCTGGATAAACTCCTTGAGCGTGGTTTTATAAATGATGAGGAAATGCAGTCAGTCAGAACAAAAGTCAAAACAGACAAGGCACGAAACCTGATCGACCTGGTGCGGGAGAAGGGACCAGAAGCCTGCTCACTTCTGATCAATACTCTCTGTGAGGTGGATCGATGTGTTTCAAAAGTGCTGAAATTAATCTGAAGCTAAAGCAAGAGACTATGGAGTGTGATGATGAATCTCTGTAATAACTGATTGTTACACATTAACTATTTACTATTCTACTTTAGATTAGAATGTTTAAGCCTGTTTTATTAAGTAAACGTTGACTTTGAAAATGATTCAAAGGGAGAAGAAGAcatgttgttctttgttttagCCACTAGATGGAGGCAGAACTTCACAGATGGACAAACAAGATGCAGATGTGAAATTAGaaaaacaattgagaaaaaTATGTCTGAGTGAAGATTATTCTCCTGATGATTAAAGAGATACTGGTTggtcatttttatatattttttatatttcttttatatttttgcaACCTCTGATGTAATTGTaacttcaaaaaaataaaaagagaaacaaata
>XM_039776836.1
CTTACCGGCACATAAAagtatttaaatattatttcCTCCACTGAGAGCACCTCCGACAGCCGACAAACCTCAAACAAAGGACAAAATCGATCCTGTTGAAGCAGTGCAGACCGAAATGAAGACAGAGAAGCAAGCTTCGTCCCTGAAACCAACCGAATCCTCCAAAACCTCCAAGGCTCCAAGTGCTGCTGTCCAGACTGGGAGgataaaaataatggacattAAAGAGTCCAAAAAACGGAACACTCACCTGGTGGTAGAGTTCAACGGCCGGATGCAGACGGTTTATGTGACAACTCGTCTTCTGGCAAACACATTTGGGATCAAAGTGGACGATGATATAGAAAGAAGACTCCGCTCTCAAATGCCGCTCACAGCAGAAGCAACATTACAAGGAAATAAAATGATATACATTAGGGTTATCCCTAACCTGGAGACAAGCGAATGTGCGAGTACGTCAGGATCAGTAGCcgagaaacaaaaacctgacGCTGATCAACAGAAGAGCAGCGAACCTGCCGAGCCCGACGGTCTGACAGTTTACTCCATTAAAGAAGTCAAGTCATTTCCTGACAAGACAGAAGTGACTGTCAATGGAAAAGTTACAAAGATGGATCCTGTTGAAGCCGTGAAGCCCAAAAAGAAGACAGAGAAGCAAGACGTGTCGCTGAAAACAGCCTTATCCTCCAAAACCTCCAAGACTACAAGTGCTGCTGTCCAGACTGGAAGGATTCAAATAATGGAAATCAAAATGACCAATAAGACAAACACTCACCTTGAGGTGGAGTTCAACGACCGGAGGCAGACGGTTTATGTGACAACTCGTCTTCTGGCAAACACGTTTGGGATCAAAGTGGACGATGATTTAGAAAGAAGACTCCGCTCTCAAATGCCAGTCACAGCAGAAGCAACATTACAAGGAAATAAAATCACAGACATTACTAACCTGGAGACAAGCGAATGTGCGAGTACGTCAGGATCAGTAGCcgagaaacaaaaacctgacaCTGGTCCAAGCGAAGCAATCCCAGCAGAGGACAGCGTCCCAGCAGAGGACAGCGTCCCAGCAGAGGACAGCGTCCCAGCAGAGGAAAAGCTGTTAAAAGTTCGGGCAGAGTTTGTAAAAAGAGTGTCTGATGCTAATCTAAACCAGCTTCTGGATAAACTCCTTGAGCGTGGTTTTATAAATGATGAGGAAATGCAGTCAGTCAGAACAAAAGTCAAAACAGACAAGGCACGAAACCTGATCGACCTGGTGCGGGAGAAGGGACCAGAAGCCTGCTCACTTCTGATCAATACTCTCTGTGAGGTGGATCGATGTGTTTCAAAAGTGCTGAAATTAATCTGAAGCTAAAGCAAGAGACTATGGAGTGTGATGATGAATCTCTGTAATAACTGATTGTTACACATTAACTATTTACTATTCTACTTTAGATTAGAATGTTTAAGCCTGTTTTATTAAGTAAACGTTGACTTTGAAAATGATTCAAAGGGAGAAGAAGAcatgttgttctttgttttagCCACTAGATGGAGGCAGAACTTCACAGATGGACAAACAAGATGCAGATGTGAAATTAGaaaaacaattgagaaaaaTATGTCTGAGTGAAGATTATTCTCCTGATGATTAAAGAGATACTGGTTggtcatttttatatattttttatatttcttttatatttttgcaACCTCTGATGTAATTGTaacttcaaaaaaataaaaagagaaacaaata

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039776835.1 True 1915 mRNA 0.42 13 3868758 3885873
XM_039776836.1 False 1738 mRNA 0.42 11 3868758 3885873

Neighbor

gene id symbol gene type direction distance location
LOC120543683 NA coding downstream 1524 3861769 ~ 3867234 (-)
LOC120543681 NA coding downstream 203982 3663829 ~ 3664776 (-)
LOC120543675 LOC100703014,LOC103354664,LOC102796844,LOC102305065,LOC101476254 coding downstream 229281 3625730 ~ 3639477 (-)
LOC120543685 LOC106675582 coding downstream 264644 3603444 ~ 3604114 (-)
LOC120543676 NA coding downstream 269026 3597711 ~ 3599732 (-)
LOC120543692 NA coding upstream 226996 4112869 ~ 4124813 (-)
LOC120543691 NA coding upstream 241916 4127789 ~ 4137034 (-)
LOC120544557 LOC104931097,LOC103374139,LOC102075861 coding upstream 312485 4198358 ~ 4207993 (-)
LOC120544550 LOC101067509,LOC102791768 coding upstream 363253 4249126 ~ 4260159 (-)
rbmx2 rbmx2,LOC106567889,LOC102785849 coding upstream 419053 4304926 ~ 4309915 (-)
G163090 NA non-coding downstream 12210 3824470 ~ 3856548 (-)
G163072 NA non-coding downstream 82030 3784762 ~ 3786728 (-)
G163057 NA non-coding downstream 175598 3692949 ~ 3693160 (-)
G163055 NA non-coding downstream 208464 3659962 ~ 3660294 (-)
G163032 NA non-coding downstream 296505 3572005 ~ 3572253 (-)
G163267 NA non-coding upstream 7640 3893513 ~ 3893888 (-)
G163261 NA non-coding upstream 46799 3932672 ~ 3933480 (-)
LOC120543688 NA non-coding upstream 82512 3968385 ~ 3969093 (-)
LOC120543690 NA non-coding upstream 89534 3975407 ~ 3975807 (-)
LOC120543687 NA non-coding upstream 98420 3984293 ~ 3987038 (-)
LOC120544249 alg8 other downstream 635476 3178767 ~ 3233282 (-)
LOC120544311 LOC101470105,LOC107380983,LOC102214284 other downstream 670510 3185970 ~ 3198248 (-)
LOC120543772 NA other downstream 773284 3037923 ~ 3095474 (-)
G162910 NA other downstream 1039164 2827089 ~ 2829594 (-)
LOC120543939 NA other downstream 1217355 2342150 ~ 2651403 (-)
rnasekb rnasek,LOC107554319,LOC101475670 other upstream 261990 4147863 ~ 4157624 (-)
LOC120544555 siah2,LOC101471392,LOC102786130 other upstream 395900 4281773 ~ 4821872 (-)
G163334 NA other upstream 416693 4302566 ~ 4304048 (-)
G163315 NA other upstream 448970 4334843 ~ 4820499 (-)
taf9 NA other upstream 556116 4441989 ~ 4443562 (-)

Expression


Co-expression Network