gabra6b


Basic Information

Item Value
gene id gabra6b
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 14862661 ~ 14901003 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039776978.1
TCGCAAAATcatatcatttaaaaaagataCTGCATTCAAAAAGGTCACTTGGTATACTGTCCATTGATATAATAGTACTGTATTTGTGCAGGTTCTCTTCTTGTacttctccctcccctctttctttctatttctctccatcgCTCTTTTCTCCTCGACATCCTTAATCAAATAGGCACAGTAACCGTCATTATCTTCATCAAACAGAAACCTTTTTACTAAATATTCAAGTTGCTCTTGAGAACAGTGTATTTCTTGATAAATGCCATGTTGGGTTAATGTGCACGTTCGTCCCTCCTCTTCACTCTCTTCACTCTCTTAAAAACTCTTCAGGTTTTTCCAACTGAGCGATTCTGAGGCGGGCGCAATCGCACTAGAGGGGAAGTCAAGTCGTGCTGGACTGGCGCGATATCCTCGCACGGTTTTACAACTAAAAGAAGACCTGCCCCGCGTTTAATCATGCTTTTAAATGATGGAATATGCTGATTTTAAAAGTTGACCAGGGATTTCTAGTTGTGGGGTGTTTGCGAGGCATGGCTTTCCTTTTAACTTGCTTGTTTCTGTCTTGTGCAAGCAGTGTTTGGGGAAATCAGCACGGTGATACCAATATCTATTTGGATAACATCACGCGCATATTGGATAGATTACTGGATGGCTATGACAACAGGCTGCGACCTGGATTTGGAGGTCCAGTTACAGAGGTCAAAACTGACATCTTTGTCACCAGCTTTGGACCTGTTTCAGATGTTGAGATGGAATACACCATGGACGTGTTCTTTCGTCAGACATGGATCGATGAACGGCTAAAATTCGAAGGCCCCATCGAGATCCTGCGGCTCAACAACCTGATGGTCAGCAAGATATGGACGCCGGACACCTTTTTCCGGAATGGCAAGAGGTCGATCTCTCACAACATGACCACCCCCAACAAGCTGTTCCGCATCATGCAGAACGGAACTATCCTCTACACCATGAGATTAACTATAAATGCAGAGTGTCCCATGCGTCTGATGAACTTCCCAATGGACGGCCATGCCTGCCCGCTCAAGTTTGGGAGTTATGCTTACCCCATCAGCGAGATTGTGTACACTTGGAAGAAgggtcctctgtcctctgtggaGGTGCCACAGGAATCATCCAGTTTGCTGCAGTACGACCTCATCGGTCAGACAGTGTCAAGCGAGAGGCTGAAGTCCAACACAGGTGAATATGTCATCATGACAGTCCACTTCCACCTGCAAAGGAAAATGGGCTTCTTCCTGATTCAGACTTACATTCCCTGTATTATGACTGTCATCCTGGCCCAAGTCTCTTTCTGGATTAATAAGGAATCAGTTCCAGCTCGGACTGTGTTTGGTATCACCACTGTCTTGACCATGACAACACTCAGTATCAGCGCTCGCCACTCCCTCCCCAAAGTTTCTTATGCCACAGCCATGGATTGGTTCATCGCCGTTTGCTTTGCCTTTGTCTTCTCCGCTCTGATTGAGTTTGCAGCCGTCAACTACTTCTCCACTCTGCAGGCCAACCGGGAGCTGAGGAAGGCAGCAGCCATGAAAGTGGCAGCCCAGGAGTCAGCAGCTGCAtctgcagctgcagctgcagctccAGCCACGGGGAATGACGGAGAGGTTTCCTCAGTTGATGCCAGTAGTGTGCTAAAGAAGAGGATGAACTCTGCCCCGCTGTTTGACCGTCCTGCCAAAACATTTCCCAACCCACCTGTCAATGCCCAAGCCTTCCTGCAGCAGGGTTCAGCTGTACCGGCCAACAACGTTCTGACTGGCACCAGCATCATCGACAAATACTCCCGCATCCTCTTCCCACTTTCATTTGGCGCCTTCAACCTGGTCTACTGGATCGTCTATCTCACTAAGGACACGATGGAGATGTCCAGGGATAGCGTTTAAGCCAAGAGTTCGTCTTCCTGGGAatcacactcgcacacacactttcatacacttgcatggacacacacatatacacaataaATAGATGACAGACGCTTGCCAAGCACTCTTTTAAACTGCCTCAGTGCATTGTATGTCTTTTTAAATACTCCCCTGGAAAGTGAGTGTTTTGAGAGCAGCTGTACCAGCTCCTATTGCCAACTTGACCCATGAGCTCACAGCCTGTAGGCCCCAGGCTCTGGAACCATTTCAAATGGTACAATatatctctgtgtctctttcg
>XR_005636391.1
GGCAGTCGCAAAATcatatcatttaaaaaagataCTGCATTCAAAAAGGTCACTTGGTATACTGTCCATTGATATAATAGTACTGTATTTGTGCAGGTTCTCTTCTTGTacttctccctcccctctttctttctatttctctccatcgCTCTTTTCTCCTCGACATCCTTAATCAAATAGGCACAGTAACCGTCATTATCTTCATCAAACAGAAACCTTTTTACTAAATATTCAAGTTGCTCTTGAGAACAGTGTATTTCTTGATAAATGCCATGTTGGGTTAATGTGCACGTTCGTCCCTCCTCTTCACTCTCTTCACTCTCTTAAAAACTCTTCAGGTTTTTCCAACTGAGCGATTCTGAGGCGGGCGCAATCGCACTAGAGGGGAAGTCAAGTCGTGCTGGACTGGCGCGATATCCTCGCACGGTTTTACAACTAAAAGAAGACCTGCCCCGCGTTTAATCATGCTTTTAAATGATGGAATATGCTGATTTTAAAAGTTGACCAGGGATTTCTAGTTGTGGGGTGTTTGCGAGGCATGGCTTTCCTTTTAACTTGCTTGTTTCTGTCTTGTGCAAGCAGTGTTTGGGGAAATCAGCACGGTGATACCAATATCTATTTGGATAACATCACGCGCATATTGGATAGATTACTGGATGGCTATGACAACAGGCTGCGACCTGGATTTGGAGGTCCAGTTACAGAGGTCAAAACTGACATCTTTGTCACCAGCTTTGGACCTGTTTCAGATGTTGAGATGGAATACACCATGGACGTGTTCTTTCGTCAGACATGGATCGATGAACGGCTAAAATTCGAAGGCCCCATCGAGATCCTGCGGCTCAACAACCTGATGGTCAGCAAGATATGGACGCCGGACACCTTTTTCCGGAATGGCAAGAGGTCGATCTCTCACAACATGACCACCCCCAACAAGCTGTTCCGCATCATGCAGAACGGAACTATCCTCTACACCATGAGATTAACTATAAATGCAGAGTGTCCCATGCGTCTGATGAACTTCCCAATGGACGGCCATGCCTGCCCGCTCAAGTTTGGGAGTTATGCTTACCCCATCAGCGAGATTGTGTACACTTGGAAGAAgggtcctctgtcctctgtggaGGTGCCACAGGAATCATCCAGTTTGCTGCAGTACGACCTCATCGGTCAGACAGTGTCAAGCGAGAGGCTGAAGTCCAACACAGGTGAATATGTCATCATGACAGTCCACTTCCACCTGCAAAGGAAAATGGGCTTCTTCCTGATTCAGACTTACATTCCCTGTATTATGACTGTCATCCTGGCCCAAGTCTCTTTCTGGATTAATAAGGAATCAGTTCCAGCTCGGACTGTGTTTGGTATCACCACTGTCTTGACCATGACAACACTCAGTATCAGCGCTCGCCACTCCCTCCCCAAAGTTTCTTATGCCACAGCCATGGATTGGTTCATCGCCGTTTGCTTTGCCTTTGTCTTCTCCGCTCTGATTGAGTTTGCAGCCGTCAACTACTTCTCCACTCTGCAGGCCAACCGGGAGCTGAGGAAGGCAGCAGCCATGAAAGTGGCAGCCCAGGAGTCAGCAGCTGCAtctgcagctgcagctgcagctccAGCCACGGGGAATGACGGAGAGGTTTCCTCAGTTGATGCCAGTAGTGTGCTAAAGAAGAGGATGAACTCTGCCCCGCTGTTTGACCGTCCTGCCAAAACATTTCCCAACCCACCTGTCAATGCCCAAGCCTTCCTGCAGCAGGGTTCAGCTGTACCGGCCAACAACGTTCTGACTGGCACCAGCATCATCGACAAATACTCCCGCATCCTCTTCCCACTTTCATTTGGCGCCTTCAACCTGGTCTACTGGATCGTCTATCTCACTAAGGACACGATGGAGATGTCCAGGTGAACAGATGGCATGGTTGTTACCAATAATTCCAGCACCTTCTCACTGAAAATTATTTGGGGATAGCGTTTAAGCCAAGAGTTCGTCTTCCTGGGAatcacactcgcacacacactttcatacacttgcatggacacacacatatacacaataaATAGATGACAGACGCTTGCCAAGCACTCTTTTAAACTGCCTCAGTGCATTGTATGTCTTTTTAAATACTCCCCTGGAAAGTGAGTGTTTTGAGAGCAGCTGTACCAGCTCCTATTGCCAACTTGACCCATGAGCTCACAGCCTGTAGGCCCCAGGCTCTGGAACCATTTCAAATGGTACAATatatctctgtgtctctttcg

Function

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit alpha-6-like isoform X1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05175 GABRA; gamma-aminobutyric acid receptor subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039776978.1 False 2193 mRNA 0.47 10 14862666 14901003
XR_005636391.1 True 2259 transcript 0.47 10 14862661 14901003

Neighbor

gene id symbol gene type direction distance location
stk10 stk10 coding upstream 314441 14500811 ~ 14548220 (+)
zmp:0000001268 LOC104947533,LOC101485009,LOC103369621,LOC106965096 coding upstream 364908 14495612 ~ 14497753 (+)
dpysl3 dpysl3,LOC102290472,LOC100711659,LOC106924514,LOC102786030,LOC102209813 coding upstream 442153 14372232 ~ 14420508 (+)
jakmip2 jakmip2,LOC103361792,LOC100711386,LOC102209146 coding upstream 495477 14340195 ~ 14367184 (+)
LOC120544236 p4ha2,LOC102786823 coding upstream 528360 14302014 ~ 14334301 (+)
gabra1 gabra1,LOC106525515,LOC108238941 coding downstream 47791 14948794 ~ 14981733 (+)
gabrg2 gabrg2 coding downstream 128279 15029282 ~ 15094230 (+)
LOC120544098 LOC102311132,LOC102078567,LOC103369521,LOC101487924 coding downstream 508716 15409719 ~ 15414450 (+)
LOC120544099 NA coding downstream 517272 15418275 ~ 15420784 (+)
LOC120575624 NA coding downstream 560753 15461756 ~ 15463684 (+)
G165368 NA non-coding upstream 108773 14753636 ~ 14753888 (+)
G165356 sh3pxd2b non-coding upstream 306252 14555619 ~ 14556409 (+)
G165281 NA non-coding upstream 635041 14227330 ~ 14227620 (+)
G165265 NA non-coding upstream 680867 14181558 ~ 14181794 (+)
G165208 NA non-coding upstream 836247 14025351 ~ 14026414 (+)
G165397 NA non-coding downstream 38085 14939088 ~ 14939385 (+)
G165442 NA non-coding downstream 530446 15431449 ~ 15433132 (+)
G165432 LOC103369494,LOC105935670,LOC106925106 non-coding downstream 568733 15469736 ~ 15473186 (+)
G165539 fgf1,LOC104966015 non-coding downstream 831705 15732708 ~ 15735369 (+)
G165543 NA non-coding downstream 907602 15808605 ~ 15848930 (+)
G165043 ddx46,LOC102797024 other upstream 2041952 12817231 ~ 12820709 (+)
G165033 NA other upstream 2065361 12794560 ~ 12797300 (+)
lcp2a lcp2 other upstream 2394347 12450762 ~ 12468314 (+)
slc25a14 slc25a14,LOC103146102,LOC106926506 other upstream 2491794 12294450 ~ 12370867 (+)
G165556 yipf5,LOC102777143 other downstream 1055477 15956480 ~ 15958135 (+)
G165702 NA other downstream 1684139 16585142 ~ 16626346 (+)
LOC120544324 NA other downstream 1835661 16736664 ~ 16754289 (+)
LOC120544384 LOC100708800,LOC102793722,LOC102204659,LOC102301331,LOC103375969,LOC101471849,LOC101156840 other downstream 1908883 16809886 ~ 16837171 (+)
fgf13b LOC104966980,LOC101465170,LOC103376159,LOC100710934,LOC108238960,LOC103138886,LOC103475676,LOC107084161,LOC106524025 other downstream 2094755 16995758 ~ 17020416 (+)

Expression


Co-expression Network