ncbp3 (LOC102780188)


Basic Information

Item Value
gene id ncbp3
gene name LOC102780188
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 3070070 ~ 3086217 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039776996.1
AGGACAGAGAACCATTGCCGGGTTACGAAAACAACCGCAGCAGCGCACACACAGCAGCCGTtgatcgcagctagctagcgccATGGCGGCAGTGCGTAGCTTACGGGTGTCGGTGAAATCAGACAGCGGCTCGGACCGCTCGGAATCGGACTCCGACTCCGAGTCGGACAGAGATGTCCGCGAAGCCGAACCgatggaggtggaggtggaagtGGAGGAGGGAGAGCTGGAGACGGAGGACATTTCCGTTAACCGTTCCCTGAAGGAGCTGCTACCGGATACGAGCCGGCGATATGAGAACAAGGCTGGAGCCTTCATCACGGGGATTGATGTCAACtcaaagGAGGCCattgagagaaaagagaagcgAGCAAGACGTTTCCATATCTGTCCCGAGGAGAACGTCGAACACAGGAACGTTTTCCTGGATAAAGAGACCATGAAGAAAGCTATCTCCAGCCTGCGTATGGAGGCCATCTACGTGACGGGCGTGGACGACATGAGCACCCAGGACATCTTCGGCTACTTTAAGGAATATCCTCCAGCCCACATCGAGTGGATCGATGACACCTCCTGTAACGTGGTTTGGCTCGACGACAACACGTCCATCCGAGCGCTCATCAACAGCAGCCGGATGCCCGACCCGGAGACGGTTACCACGGAGACGGTGAGCACTGACCAGGCGGGCGAACAGAGCAAAGtggCAGGTCGCCTGGGGCGCTGCTCGGAGGacgaagatgatgatgatgatgacgaggaggaggaagagggcgAGGTGGACGAAGACGAAGCCGTGAAGAAGAGCGGCGAGGAGATCGAGGCCAAGGACAGCGACGGAGAGGCGGAGCCTAAAGCCAAGGCGCAGGACGTCCAGgtggAGGACCTGTCCCAGGTGGAGCGAGAGTCTCTCCTGAGGAACGACCTGCGTCCGGCCATCAAACCCTTCAAAGGAAACAAGCTCTTACTGCGCTTCGCCACGCACGATGATAAGAAGGAGCTGGGCGCCGCTCGCCGCAGCAGGTACTACATGAAGTATGGGAACCCGAACTATGGAGGCATGAAGGGGATCCTCAGCAACTCCTGGAAGAGGAGGTTTCACAACAGGCGCATCCAGCGAGACGTCATCAAGAGCAAGAAGCCTCTGATCGGAGACAACCTGGGACACACACCTCCGTACACCCACCGGCACTCCGCGGACCTGGTGAACCTGCCCGAGGAGCCAAtcaaagaagaggaggaggaggaggatgatgaagaggagggagacGAGGACATGGAGGAGGACGACCGCGTGGTGGAGTACAAGGAGCGAGCGGAGAAGGAGCGCGGCGGAGGCGTGCGCACGCTGGGGACGGGTCTCCGCGGCCGCGCCGAGCGCTCCCCGTCCCATTGGTCGGAGTCGGACGAGATGGACTACGACCTGGAGCTGAAGATGATCTCCACGCCCTCGCCCAAGAAGACGAAGAAGATGACCATGTACGCCGACGAGCTGGACACGCAGCTGAAGAGCATCCGGAACCGGGTGGGGGGGTCGGGGTCACAGAGCCGAGCCAAGTCCACGTCGCCCTGCAAGGTGACTGACGTCCGgcagctgctggaggagaagaagagacacTCTCAGCACAGACAGCCCCCCCCGGTGGCAGCCAGCGGGAAGACAGATGTACGGCAGCGTTTGGGGAAAAGGCGCTACTCTCCCGACAGACGGCGCTCGCCCTCCCCCGTCTCCCCCAGAGACCTGCCTCCAGCCAGAGAACCAATCAGAGACGTGCATCGCAGACTGGGCGTGGCCACGCAAGAACACAGAGCCGACTACTCCAGCTCATCCAAAGACAGAAAGAgCGGTCTGTGGAGCAGACTGGGCTCCGTGGAAGACGACAGCAGCGCCGGACGCAGCGAGCGCAGGCCCAGCAGCCGGCCAGCGGGCctcttcacctcctcctcctcctcttcctcctcctcttcctctgcggGGAGGAAGGACGCCAGCAAGGGCGCCGGcagaaaggaagaagaagaggaggtggaggaggaagacgaCTCGACGCTGCAGAAGATGTGGGGCGCCATGATCAAACAGAAACAGGAGCGTATCTCCACCAGGATCAAGAAGAGCCGGCTGGACAACCTGCCCTCACTGCAGATCGAGATCAGCCGCGACAGCAGCGAGGACTCGGACGCCTGAAGGGCCAGAGGGGACCGGGGGGGGGGCGAGGGACCAGGGTGGGCAGGGGGCCAGGGGGGACCAGGTTCTTCTCTTTCTGAACTTTACATCACACCTTTTCTCCATGAACAGAAATATAAAGAACAGACTGCAGATCTGAGGCCAGTGGGCTGGTCCTCTTTAGCtttattttgtgtctccagGACAGATTTACTGAATGGGGTCCCGATCCAGGGGCTCTGAGGGTCCAGGGGCTTCTAGGATCCAGGGGCTCTGAGGGTCAAGGGACCCCTGTTGGAAGTGGCTGTTAACATGTCTTGTCAGTGTAAAGTAGAGATCTCCTGatggtgttttgttgttttaatatCCACATCCACCCGACAATGTGTAAAGAAACCCAAACCccaataatagtaataataatgttcTAATGCAgacatgtgtttttgtttctcgTCTCCAGTGTCAATAAATCAGCCTGTTGTCATGAA

Function

NR:

description
nuclear cap-binding protein subunit 3

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039776996.1 True 2655 mRNA 0.59 13 3070070 3086217

Neighbor

gene id symbol gene type direction distance location
LOC120543768 NA coding downstream 132318 2924482 ~ 2937752 (-)
LOC120543771 NA coding downstream 171608 2873229 ~ 2898462 (-)
LOC120543770 NA coding downstream 185501 2882355 ~ 2884569 (-)
LOC120544248 NA coding downstream 201740 2855026 ~ 2868330 (-)
pcf11 pcf11 coding downstream 215015 2814061 ~ 2855055 (-)
LOC120575705 NA coding upstream 261403 3347620 ~ 3354553 (-)
trnad-guc_8 NA coding upstream 318970 3405187 ~ 3405258 (-)
trnav-aac_3 NA coding upstream 319813 3406030 ~ 3406102 (-)
trnav-cac NA coding upstream 323589 3409806 ~ 3409878 (-)
trnav-cac_1 NA coding upstream 330149 3416366 ~ 3416438 (-)
LOC120543774 NA non-coding downstream 34318 3029974 ~ 3035752 (-)
G162909 NA non-coding downstream 136972 2819368 ~ 2933098 (-)
G162922 NA non-coding downstream 155501 2914009 ~ 2914569 (-)
G162906 NA non-coding downstream 204844 2824866 ~ 2865226 (-)
G162908 NA non-coding downstream 218666 2847321 ~ 2851404 (-)
G162939 NA non-coding upstream 1704 3087921 ~ 3089697 (-)
G162940 NA non-coding upstream 4055 3090272 ~ 3090937 (-)
G162938 NA non-coding upstream 15235 3101452 ~ 3534641 (-)
G162930 NA non-coding upstream 18845 3105062 ~ 3114875 (-)
G162945 NA non-coding upstream 48169 3134386 ~ 3135006 (-)
G162910 NA other downstream 240476 2827089 ~ 2829594 (-)
LOC120543939 NA other downstream 418667 2342150 ~ 2651403 (-)
LOC120544171 NA other downstream 1178647 1887629 ~ 1891423 (-)
G162787 NA other downstream 1233568 1835969 ~ 1836502 (-)
G162399 NA other downstream 1629252 1437253 ~ 1440818 (-)
LOC120544249 alg8 other upstream 92550 3178767 ~ 3233282 (-)
LOC120544311 LOC101470105,LOC107380983,LOC102214284 other upstream 99753 3185970 ~ 3198248 (-)
G163259 NA other upstream 784108 3870325 ~ 3874115 (-)
rnasekb rnasek,LOC107554319,LOC101475670 other upstream 1061646 4147863 ~ 4157624 (-)
LOC120544555 siah2,LOC101471392,LOC102786130 other upstream 1195556 4281773 ~ 4821872 (-)

Expression


Co-expression Network