LOC120543786 (rnf145)


Basic Information

Item Value
gene id LOC120543786
gene name rnf145
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 17176441 ~ 17196281 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777022.1
ATGCCCAGTACATCCTTCTCGGTACTTCAGGGTAATGGCTGTGCTAGGTGGGACGAGCGGATCGACCGCATCCTTTGAGTGTGAGGCTCTTCCATCGAGAGGACCATTTTAACTCAGGCGGTGCCGAGTTAAAATGGTCGATATCCGACCCGAAAAGCATCCCGAAACAGCTGTAAATATTGCGAACATCGTCCTTTAAATTACACCCACTGTTAACATCCAGTCTTAGTGGTCAGTTCCGCCTGCCGATCAGAGGTTTACACTGAGGCCATGGCTGTGAAGGACCGCGTAGAGGCGGTACTCAATGTGGGACTGCGTGTTCCAAGCATCATGCTGCTGGATGTCCTGTACCGCTGGGATGTCAGCTCCTTCTTCCAGAAGATACAGCGCTCCAGCCTCTCCAACAACCCCCTGTTCCAGTACAAATACCTGGCACTCTACCTGCACTACGTGGGTTACATCCTGAGTTTGGTGCTCCTGACTCTGCCTCGTCAGCACCTGGTTAAACTCTACCTATATGTCCTAACGGCTCTGCTGTTGTTTGCTGGTCACCAAGTctcaagGGATTATGTCCGCAGTGAACTGGAGTCTGGCTATGAAGGATCGGTCTACCTGGAACCTCTCTCCATGAACAGATTCACCACTGCACTCATAAGTCAGCTGGTGGTGTGTACGCTATGTTCCTGTGTGATGCAGACCAAGAGGATTTGGCTTTTCTCTGCTCACCTCCTCCCTCTGGTGGCCAGACTGTGTCTTATCCCACTGGAGACCATCGTCTTCATCAATAAGTTCTCCATGATCTTCACAGGCCTGGAGGTCATTTACTTCCTGGCTTCTAACTTGTTGGTACCATACAACCTGGCCAAGACTGCCTACAGGGAGCTGGCTCAGGTGGTGGAAGTGTACGGGCTGCTAGCTTTGGGTATGTCTCTATGGAACCAGCTGGTCCTTCCAGTTCTCTTTATGTGTTTCTGGCTACTGCTGTTCGCATTGCAGATCTACTCCTACTTCAGCACCAGAGACCAGCCTACCTCAAGGGAGAGgctccttttcctctttcttacTAGTATAGCAGAATGTTGTAGTACACCGTACTCCCTGCTGGGTCTGGTTTTCACCGTCTCCTTCATTGCTCTTGGAGTTCTCACACTCTGCAAGTTCTACCTGCAAGGTTACAGAGCCTTTATGAATGACAACACCATGCACAGGGGGATGACAGAAGGCATCACCCTGCTGATCCTCGCTGTCCAGACTGGCCTCATTGAGCTTCAAGTCATCCACCGAgccttcctcctctccatcaTCCTCTTCATTGTTGTTGCTTCCATCCTGCAGTCCATGCTGGAGATAGCTGACCCCATAGTCCTGGCCCTGGGAGCATCAAGAGACAAGAGTTTGTGGAAGCACTTCAGAGccgtgtctctgtgtctgttccTGCTGATTTTCCCAGCCTACATGGCCTATATGATCTGTCAGTTCTTCCACATGGACTTCTGGCTACTCATCatcatctcctcctccatcctcacaTCACTGCAGGTCCTCGGCACTCTGCTGATCTACATTCTCTTCATGGTGGAGGAGTTTCGAAAGGCTCCAGTAGAGAACATGGATGAAGTTATCTACTGTGTCAACGGGACGTACAGATTGCTGGAGTTCCTGGTCGCAGTGTGCGTGGTGTGCTACGGCGTGTCAGAGACGGTATTTGGCGAGTGGAGTGTGATGGGAAGCACCATCATCCTGGTCCACTCGTATTATAACGTCTGGCTCAGGGCCCAGCTAGGTTGGCAGAGCTTCCTGCTCAGGAGAGATGCTGTAAACAAGATCAAAAGCCTCCCCACAGCCAGCAACACACAGCTGGAACAGTACAATGACATCTGCGCTATCTGCTACCAGGACATGAACAGTGCTGTGATCACTCCATGCAGTCATTTCTTCCACGCTGGCTGTCTGAAGAAATGGCTTTATGTCCAGGAAACATGCCCCCTCTGTCACTCGCAACTCAAGAGCCAATCAACAACCGCTACTGTCCCCAACCAAGATgtccctgcagccaatcagaacccTGCAGGGCAGGAAGAAGCCCCAGCCAATAAGAAGCCGAAAGATCACACTCTTCCAGATGATGGGAAGGAGGGTGGGCCAGGAGAGCAGCAGGGAGATAATGGACCTGCCATGTCAGCTGGagaaacctcctcctcctcctcctcctctggtgtTCCCTCTACTCCCCAGCATCTGGCCAGGACTTCATTGTTGTCTTCTTCTCCTTCCCCACTTGTGACTGAATATCGGAACCAGTCGCTTACAGATCATCCTTCTTCGACTTCCTCAGACACATTGGAcatgcccccctctctctcatctctctcccactcttcCTCCTCACAGCCACTGGCCCAGGCACAGATAACCCCTGTTGAACCTGAGCCCACCCCTCAGATAAACCCAGGCTTCCTACTGGACAGCCAGGAGTCATCTAGTGGTCCATCATCACAGCTTGACCAGCCCACTTACCCTTCTGAGGAACAATCACCTCCTCCTTGCAGCCTCTGAGCCCCATTGTAACACACACGACATACGTGCAtgcacatgtaaacacactatCTAAATAATCTAAAATCTGCCTATATTCTACTTGTCCAGCAGTTGGCTATCCCATCATGTTAGAAATTCAACTCCAAACCTCTCCTCCATATCCAttttaagagaaaaaaatacaaaacaatctCTAAGCAGATCTTCATTACTCTGCATCAAATAAATGCCGATGATTCCAACTTCAGAAAATGTTGCCATTTTTCAGGCAATTGTCTTGGAACAGTTCACCTAAATGTGTTTCCATGCTGAGTTTAACTTTCATGCCAGCAATGATTTCATTTCCCATTCAacacaaaaaagggaaaagcaGTAATCTCATCTAAAAAATAATTAGTAGTTCTACATGATGTCCACGAAATGTGAAATCCTGAATGAAACTGAAGTACCACATCCCTTCTAGCTTTTGACATTGATCTCTATGACGACATTTCTAAAATCCTGCTTATGTCCTCATTTCATGTGATGGTTGCTCCCATCATGCCTTTGTTTGTGCATCTTCACTCTCATTGTTGTACATTTCACAGTATTTGGGTTTTCTCTTTAGTCCTGTATCTGCCATGATCTAATTAGGAATGGGTCAGAGGTTTAGAGAGCCTTGATAGGTTAGCGATAACTGGTGGTTGCATTTTAAACAGTGACAAAGTCATAGCATTTCATATGGTTCACAACATTTCAAGTCTACAGATTTCTCCATTTGGTTTTGATAAAGATGTTTGGTTTTCACTGTTGGATGGCAGTAGTTATGTGTATTAGTGAATACACTAAGCATTAACAGAGACTGAATGTTGTTTCTTGAGGCCATCACGTGACCTGAAGCCTGGTGCTATGCAGAGGATACATGGTGTGGTCTGTTGAAGTGTTACAGTGTGAACAAATCAAAGGGTTCACATGGAAAAACTAATTCATTTCAATTGTCAAGCTTTCTCTATTGTACTGCTTTGAATCAAACTTGTTTGGCTGGTCCCAGCAAAAACAGTTCTACTCCTCATCGCCAAACTTTTCTATTACTGTTAAAGAGATGttatttttaagataatttttacATTACTGCTTTAATGGATGGAGACCGGCTAAAAACAAGGGGGAGAAAGAGTGAGATAACATGTCATAGAGGCCATAGTTGGTATTTGAACCTTCAGCATTGTGAGAATGTGGAGTGTAAATTAGCCCACAGAGCAGGCAAGCAGCCCaaactctgttgttgttgttggctttACTTCATTCATGGTACTCATCCGCACTCATTTTCCTGAGCTCAGCTGATTTTACAAACCCATTCAACCAGTCACATTTAACCTGTCCATCCCAAGTTTGCCATCGAGCCAGCGATTGTTGAGGCTCTTTCATGGCAGGAGCCAATCCCCTTGCTCCCTGCAGCTCCTTTTTATAAACCAATCACATCAAGCACCCTGTGTTTTCTAAGACCATCATTATCCTCCTGCTGCTCAGTCACTTCACTCTATGAAATGTTATTACCAGCAAATTGAGCCGTTTCATAGGAAAGACTTTTGTTTcacacatgctaacacacaTCTGTGTTGGCTCCTCCACTTTGCAAATggggagaagtgtgtgtgttgaagagTCAGAAAGACTAAATCTTGAGAATGCTGAGTCTTGATGCACGCTTGTATTTAGAGCTTGCACGCTGCCACTGTTACCATagcatttatttgtttgtctCCAATGTGCTCTAACCTTGCTACCaattttatttctgccattttcttttttttttttttggggggggggggttgcattTGCACTAATGTCATTTATACTAGCAATGCTCCAAAGCTGTTCTGTGGCTGTGAGCAACCAAATACCTtctggtgtgtttgtgtacgaGGAAACAGCCTAATCTGTTTGTTTGTAATGTATATACATGTTGCTCTGTATGACATCTATATTAAACCAGGCGAGTGTTGATATATAAATAAGATCAGGGCTTGGTTTCTCCAAAGCTTCCTAGTGGTTTGGTGTTCTTTGTTACTTTACATGCCTGTGAACAAAGACAAACTTTTGGCTAGGAACCTTTCGGGGTAACCAAGCCTTCTGATCTGCGAGACCAGCCAGTGGTGCTGATTCTCCGGTCTGTATGACGCGTCCTTAAGCTGATGTGATCACTCTGGTGCCCTCTACTGTTAGGAGTGGGATCAGCATGGCGCAGAAGGACTGGGGATGCACTAGTTAACCCTCAACCGTATTACTTACTACCACTATTACTAAAGGTCTTATTGCTATGAATGACTTTATTGTTGACATTGGAAAGCGTCGGCCACAGGGCTGAGAATGAATACACAATGTATGATCAAACCTGGCCAGCGCTGTataactgtttatttttttttaagagatgaAATTGAGAGTTTGATGTATTTTGCACATGTTCCTCTGAAAGGTGAACATAAGGACTTTCTGTATTTTTGAAAAACTCATTCTCATTTTATTATCAGCTCCATTTCTTAAGACTTTGATGTAAAACAAAGACCCAAAAATAGTTTCAAAGATTAAAACGGCCTCATATGTGGAGCATTTGACTGTGTCCAGCAGAGAGATCACCTGTTCAACAATATGTCACATGCTCCACAAGATGAGAACTGTCATTGGCAACTGTATGTGAATTTGCGTAGCAGTATTAAGTGATAAATAACTAGCAGAGAAGCCTGTCAGCTGTTGATTCCTGATGTATTTGCTCAGTTTATACTCCATGTTGGAGAAATTGCGGATGTTGCGGTCACTCTCCAGGCTATGATCTGTGACATCTTTTCATACGGCCTATGACAGTTTAACATCAAATGCTTTAAGGCAATCGGAGATCAATATTTAGTATGACTAAACAACTTATTCATCTGATAACCATAGAAAGTGTAGATGCTATGGCAAAACGAAGcttttaaatacattatttgcatttttatgcATCTCTAAGATTTCAGCTGTGGGATTGACTTCATGTAAACTGCAAGTTGTCTGTGAGCTATTGtgccaaacaaatacataaaCCCTTCACTGCTGCTCCACACATTGAGCAGCATTAATTTGACAAAGCAGTTCCTCCTGTCAGCTGTGAGCTTGGTGTGTTTCTAAAACATTCTAAAACGGTACATTTGCCATCAATCCATGTCAGTtaacataaattatattttataattgCTCTTGATTGACTTGCTGGTTAAATAGCACTATAAAAAAAGCCAATGTGTCCTACATGTCACAATATTTCTTAATACTGAAACAGTTCATgtatattaattttaaaattgcTAGTAAGTAACCAGGAGGAATATAAACAGGCTACAGCCCGTTTGATAGCTGAAGTCAATCTCCAATCAGAAATCCAGATGTTTCTTATTCTCAATTTATCGCAGTACTTTGCAAAATCATTACTCTAGAACACTGAAAATGTAAGCAAATATCCCAATGGAATCTATAGCTGCCACAAAGCACTCTGACCACATTTCTCTTCTGAATGCATTACAGATGATACATGATAGgtttttttccacacacacaattaGGGACCTGCTCTCTATGACTGAATGCCAGTTGTGTTCTGTTAAAACTCTTCACAGTTGGTTTTTGACTTTATGTCTGGCATTGCCTtggttattttacaaaaattgaatgtcaaaaataaatgaaCCATCCCACTCTGGACTCA

Function

symbol description
rnf145 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

NR:

description
PREDICTED: RING finger protein 145 isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23789 RNF145; E3 ubiquitin-protein ligase RNF145

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777022.1 True 6265 mRNA 0.44 12 17176441 17196281

Neighbor

gene id symbol gene type direction distance location
il12bb NA coding upstream 8993 17163715 ~ 17167448 (+)
LOC120544081 NA coding upstream 54627 17110867 ~ 17121814 (+)
LOC120544325 LOC104933051,LOC104966984,LOC100710405 coding upstream 196731 16963959 ~ 16979710 (+)
LOC120544388 NA coding upstream 282985 16890450 ~ 16893456 (+)
trnas-gcu_7 NA coding upstream 297119 16879241 ~ 16879322 (+)
LOC120543932 NA coding downstream 268126 17464407 ~ 17467578 (+)
asl asl coding downstream 293731 17490012 ~ 17498266 (+)
LOC120544634 NA coding downstream 329365 17525646 ~ 17527150 (+)
trnat-agu_7 NA coding downstream 330954 17527235 ~ 17527308 (+)
slc13a2 slc13a2,LOC108238977,LOC106523460,LOC103362294 coding downstream 338953 17535234 ~ 17544619 (+)
G165905 NA non-coding upstream 13993 17161933 ~ 17162448 (+)
G165865 LOC103376153,LOC104933044,LOC106917154,LOC105916235,LOC103138852 non-coding upstream 221161 16948670 ~ 16955280 (+)
G165849 NA non-coding upstream 255199 16917859 ~ 16921242 (+)
LOC120544389 NA non-coding upstream 286105 16885988 ~ 16890336 (+)
G165764 dpp3 non-coding upstream 310781 16864145 ~ 16865660 (+)
G165995 NA non-coding downstream 204328 17400609 ~ 17409951 (+)
G166000 NA non-coding downstream 233960 17430241 ~ 17430648 (+)
G166024 NA non-coding downstream 310558 17506839 ~ 17507735 (+)
G166028 LOC104958813,LOC105939289,LOC101064037,LOC102197733 non-coding downstream 314896 17511177 ~ 17514560 (+)
G166032 NA non-coding downstream 332427 17528708 ~ 17530096 (+)
ubtd2 ubtd2,LOC102788971,LOC100712015 other upstream 16296 17145476 ~ 17160145 (+)
fgf13b LOC104966980,LOC101465170,LOC103376159,LOC100710934,LOC108238960,LOC103138886,LOC103475676,LOC107084161,LOC106524025 other upstream 156025 16995758 ~ 17020416 (+)
LOC120544384 LOC100708800,LOC102793722,LOC102204659,LOC102301331,LOC103375969,LOC101471849,LOC101156840 other upstream 339270 16809886 ~ 16837171 (+)
LOC120544324 NA other upstream 422152 16736664 ~ 16754289 (+)
G165702 NA other upstream 550095 16585142 ~ 16626346 (+)
LOC120544493 LOC103370065,LOC101073234,LOC102787924,LOC100696184 other downstream 2416 17198697 ~ 17285342 (+)
LOC120544326 bod1,LOC103369971,LOC101484775,LOC100697254,LOC102215513,LOC102291330,LOC102786418,LOC105939389 other downstream 146499 17342780 ~ 17362284 (+)
G165984 tcerg1,LOC102783943 other downstream 153285 17349566 ~ 17490688 (+)
LOC120575677 LOC103362304,LOC102306182,LOC100703890 other downstream 473834 17670115 ~ 17685280 (+)
G166064 NA other downstream 558590 17754871 ~ 17766415 (+)

Expression


Co-expression Network