LOC120543827 (LOC103357770)


Basic Information

Item Value
gene id LOC120543827
gene name LOC103357770
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 10749452 ~ 10778550 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777104.1
ttttctgttcccTGGGGCCACAGTGTTTTCAACGGGACTCAACTTACCGGACTCGCCATGGCCGCTTGACCCAGGCTAAAATACCCTTCTTCCGTTATTATTTGTTCGAAACATTTGTACAAACTTTTCCCAGAAAAAACTTTCGTCTTTTGTATAGTTTTTTATGTCAACGAATAAGGATGCAACCCCCACCGAGAAAGGTCCGGGTCACCCAGGAGCTGAAACACACTCACGCAGAGCAGATGAGCCGATTACACATCAAACACCAGACAGAGTGTGACCTCCTAGAAGACCTGAGGACTTTTAGCCAAAAGAGGGCAGCTGTAGAGAGGGACTACGCCCAGGCCCTCCAGAAGTTGGCAAATCAGTATCTAAAGAGGGAATGGCCGGACAGTCTGACAGAAGAACAAACCGACCACAGGAACATGTATTGTGTATGGAGGGCCTATTTGGAGGGTACGGTCCAGGTCACCCAGTCCAGAATCAGCGCCTGTGATAACTACAAAGTCCAAGTTGCTGATCCAGCCAAGATGGGCAGACTGCAGAAGGAACAGCAGCTGAGGAAGTGTATTGAACAGCTGACGGTGGTTCAAGCTGAGCTGCAGGGGTCGGTGAAGGAGCTGACCAAGAGCAGGAAGAAGTACCAGGAGGCTGAGACGATGGCACAGGCTGTCCGAGAGAAGGCAGAGCTGGACGCCAAGTCCAAGCTAAGTCTCTTCCAGTCCAGATCCAGTCTTCAAAGGGCGAGTGTAAAGCTGAAAGCCAAGAGGAGTGAGTGCAACTCCAAAGCCACGCATGCCAGAAATGACTACCTTCTAATGCTAGCAGCCGCTAACGCTCACCAGCAGCGCTACTATGACACAGACCTCATGGACTGCATCAAGGTCTTAGATGGAAAAATCTATGAGCAGGTAAAAGATTACCTGGTCTCGCTGTGTCAGACTGAGCTGGAAACTTACCAGGCTGTCCACAACACCTTCAACCAGCTTTTAAACAGCTCCAGTGGGgTTCTGCAGGAGTTTCACCAGCAGCAGTTTGTACAGAAGAACCTCATGTTCCAGCAAGCCCCGGACTTCTTGTACCAGCCCAGCGACTCAGATACGgtGATGCAGCTGCAGAAGGAGAGTGGAACGTCAGAGGAGCACAGTCTGGATAAAGAGGCGAGGAAATGGGCAAGCCGCGTGGCCCGAGAATACAAGAGCATCATCCACACTCAGAGGgCCCTGGAGGATTATGGGACGCAGGAATCATCAGAGCAAAACAGTGAGCTGGAGACCAAGATGGAGGTGGCCAGGCGGAGTCTTCGGAGAGCAgagacAGTGAAAGTGAAAGCAGAGGCCCGTCTGGACTTGTTGAGGCAGGCAGGTGTTGCTGTTGAAACGTGGCTGAAGAGTGCCATGAACCAGGTGATGGAGGAGCTGGAGAACGAGCGCTGGAACAATCTCAATACCCATGATCCTTCACTCTCTGGGACAGCAGATTTGGAAcgagaggatgaggaggagatggaggacaGTGGTGAAGTGTTAGACGACAGCAGCTCCAGCCCCTCCAGCACCTTGAAAAACTATCCCCTCACCTGCAAAGTACTCTACTCCTACAAGGCGTCGCAGCCAGATGAACTGACGATTGAGGAGCAGGAAATCTTGGAGGTCATTGATGATGGAGACATGGAGGACTGGGTCAAGGCCAGAAATCGGAGCGGACAGGTTGGCTACGTCCCAGAGAAATACCTGCAGCTTCCTTcctccaacagtctgctgagCATGCTGCAGGCTCTTGCGGCACTGGATGCCCGATCCCATTCCTCCAGTAACTCCACTGAGCCTGAAACCGAACTACCAACTGGCTCAATCAACGGAGACTCCAGTGTGTCATTTGCGAAGGCCCTGTACGACTACGCAGGACAAACGGATGACGAGCTGTCGTTTCCAGAAGGTGCCATCATCCGCATCCTGAGCAGAGAGACCCACGAGGATGACGGTTTCTGGGAGGGAGAGTTTAACGGCGTCGTCGGCGTCTTCCCTGCAGTTCTGGTGGAGGATCTCGCCGGCGCCAGCGAGAATGGAGATGGACAAAGAGATGTCAGTGCACAGGCGTCCCCCTCCCCTTTGGCCCAGTGCGACCAATCCCCTCGTAGTCCCTTCCAGCAGGGGCCTCTCCACAGCAGCCCCCTTCAGACGCCCACCATGTCCTCACCTTTGTCAAGTCCCTGCAGCGCAACAGCTTCTCCCATTGGCCGACCACCGTCCTATCACAACGGACATCACAGGCCACCACCAGCCCCCCACAAAAGCCCCTTTCAGAGTCCAACCCAAGGCTCCCCTCAACCTCCCAAATACCCAGAGAGCAGCTCCAGCACCATTCGACCTGTGAGTCAACACACAATTAATCGTTTggtccgaccaacagtccaaaccccAAAGTTTACAGTCATGTAAAACAGAGAGAACCTGGAAATTATCATATTTGAGAATCTGGAACCATCAAATTTAGcatttttggtttataaaaaataaatgattatttgaT
>XM_039777105.1
TCTGCTAGGCTAGCTCAGTGTCTATCTGGATCCCACAATGGCCGGGTTTGTAGCGGCTTTTGAAGCTTTGGCACCAAGATCACCAAGACCAACGAGTTCAGAGCCGAGTCTAGCCTGTCTCAGGACTGCATGACAGGGCTGGTCCTTTCACAGTGGACAGTGGAGGGAAAGATAAAGCAGAAATCACTTGAGCCCTCCAGAAGTTGGCAAATCAGTATCTAAAGAGGGAATGGCCGGACAGTCTGACAGAAGAACAAACCGACCACAGGAACATGTATTGTGTATGGAGGGCCTATTTGGAGGGTACGGTCCAGGTCACCCAGTCCAGAATCAGCGCCTGTGATAACTACAAAGTCCAAGTTGCTGATCCAGCCAAGATGGGCAGACTGCAGAAGGAACAGCAGCTGAGGAAGTGTATTGAACAGCTGACGGTGGTTCAAGCTGAGCTGCAGGGGTCGGTGAAGGAGCTGACCAAGAGCAGGAAGAAGTACCAGGAGGCTGAGACGATGGCACAGGCTGTCCGAGAGAAGGCAGAGCTGGACGCCAAGTCCAAGCTAAGTCTCTTCCAGTCCAGATCCAGTCTTCAAAGGGCGAGTGTAAAGCTGAAAGCCAAGAGGAGTGAGTGCAACTCCAAAGCCACGCATGCCAGAAATGACTACCTTCTAATGCTAGCAGCCGCTAACGCTCACCAGCAGCGCTACTATGACACAGACCTCATGGACTGCATCAAGGTCTTAGATGGAAAAATCTATGAGCAGGTAAAAGATTACCTGGTCTCGCTGTGTCAGACTGAGCTGGAAACTTACCAGGCTGTCCACAACACCTTCAACCAGCTTTTAAACAGCTCCAGTGGGgTTCTGCAGGAGTTTCACCAGCAGCAGTTTGTACAGAAGAACCTCATGTTCCAGCAAGCCCCGGACTTCTTGTACCAGCCCAGCGACTCAGATACGgtGATGCAGCTGCAGAAGGAGAGTGGAACGTCAGAGGAGCACAGTCTGGATAAAGAGGCGAGGAAATGGGCAAGCCGCGTGGCCCGAGAATACAAGAGCATCATCCACACTCAGAGGgCCCTGGAGGATTATGGGACGCAGGAATCATCAGAGCAAAACAGTGAGCTGGAGACCAAGATGGAGGTGGCCAGGCGGAGTCTTCGGAGAGCAgagacAGTGAAAGTGAAAGCAGAGGCCCGTCTGGACTTGTTGAGGCAGGCAGGTGTTGCTGTTGAAACGTGGCTGAAGAGTGCCATGAACCAGGTGATGGAGGAGCTGGAGAACGAGCGCTGGAACAATCTCAATACCCATGATCCTTCACTCTCTGGGACAGCAGATTTGGAAcgagaggatgaggaggagatggaggacaGTGGTGAAGTGTTAGACGACAGCAGCTCCAGCCCCTCCAGCACCTTGAAAAACTATCCCCTCACCTGCAAAGTACTCTACTCCTACAAGGCGTCGCAGCCAGATGAACTGACGATTGAGGAGCAGGAAATCTTGGAGGTCATTGATGATGGAGACATGGAGGACTGGGTCAAGGCCAGAAATCGGAGCGGACAGGTTGGCTACGTCCCAGAGAAATACCTGCAGCTTCCTTcctccaacagtctgctgagCATGCTGCAGGCTCTTGCGGCACTGGATGCCCGATCCCATTCCTCCAGTAACTCCACTGAGCCTGAAACCGAACTACCAACTGGCTCAATCAACGGAGACTCCAGTGTGTCATTTGCGAAGGCCCTGTACGACTACGCAGGACAAACGGATGACGAGCTGTCGTTTCCAGAAGGTGCCATCATCCGCATCCTGAGCAGAGAGACCCACGAGGATGACGGTTTCTGGGAGGGAGAGTTTAACGGCGTCGTCGGCGTCTTCCCTGCAGTTCTGGTGGAGGATCTCGCCGGCGCCAGCGAGAATGGAGATGGACAAAGAGATGTCAGTGCACAGGCGTCCCCCTCCCCTTTGGCCCAGTGCGACCAATCCCCTCGTAGTCCCTTCCAGCAGGGGCCTCTCCACAGCAGCCCCCTTCAGACGCCCACCATGTCCTCACCTTTGTCAAGTCCCTGCAGCGCAACAGCTTCTCCCATTGGCCGACCACCGTCCTATCACAACGGACATCACAGGCCACCACCAGCCCCCCACAAAAGCCCCTTTCAGAGTCCAACCCAAGGCTCCCCTCAACCTCCCAAATACCCAGAGAGCAGCTCCAGCACCATTCGACCTGTGAGTCAACACACAATTAATCGTTTggtccgaccaacagtccaaaccccAAAGTTTACAGTCATGTAAAACAGAGAGAACCTGGAAATTATCATATTTGAGAATCTGGAACCATCAAATTTAGcatttttggtttataaaaaataaatgattatttg

Function

NR:

description
PREDICTED: FCH and double SH3 domains protein 2-like isoform X1

GO: NA

KEGG:

id description
K20125 FCHSD; F-BAR and double SH3 domains protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777104.1 True 2532 mRNA 0.52 19 10749452 10778550
XM_039777105.1 False 2377 mRNA 0.53 17 10749454 10767316

Neighbor

gene id symbol gene type direction distance location
rsf1b.1 LOC106962404,LOC103145544,LOC103131284 coding downstream 4112 10725339 ~ 10745340 (-)
LOC120543735 LOC104919183,LOC103357773 coding downstream 33373 10697026 ~ 10716079 (-)
ompb omp,LOC104919181,LOC103395359 coding downstream 129948 10618757 ~ 10619504 (-)
LOC120544706 slc35f2 coding downstream 181103 10560040 ~ 10568349 (-)
LOC120544314 NA coding downstream 235731 10512542 ~ 10513721 (-)
vps37d vps37d,LOC103357766,LOC100712407,LOC108243620,LOC101486403,LOC102312367 coding upstream 36953 10815503 ~ 10839874 (-)
emsy emsy coding upstream 163041 10941591 ~ 10961644 (-)
tlcd5b LOC102308441,LOC101483771,LOC102197541,LOC100707923,LOC103374539,LOC102795433 coding upstream 228447 11006997 ~ 11011776 (-)
castor2 gatsl2 coding upstream 253964 11032514 ~ 11052199 (-)
doc2b doc2b,LOC103146121,LOC102199138 coding upstream 292941 11071491 ~ 11205784 (-)
G164616 NA non-coding downstream 1604 10747351 ~ 10747848 (-)
G164605 LOC105011052,LOC106603713,LOC108248158 non-coding downstream 89892 10657816 ~ 10659560 (-)
G164564 NA non-coding downstream 103633 10641572 ~ 10645819 (-)
G164563 NA non-coding downstream 114214 10635016 ~ 10635238 (-)
G164562 NA non-coding downstream 115650 10633602 ~ 10633802 (-)
G164620 NA non-coding upstream 30084 10808634 ~ 10815239 (-)
G164631 NA non-coding upstream 62541 10841091 ~ 10841305 (-)
G164633 NA non-coding upstream 65271 10843821 ~ 10844808 (-)
G164640 NA non-coding upstream 67014 10845564 ~ 10845897 (-)
G164648 NA non-coding upstream 103874 10882424 ~ 10886383 (-)
elmod1 elmod1 other downstream 192176 10542218 ~ 10557276 (-)
LOC120543909 NA other downstream 260288 10463211 ~ 10489164 (-)
plekhb1 LOC107387206,LOC100711952 other downstream 621845 10109156 ~ 10127607 (-)
G164179 NA other downstream 2110291 8637714 ~ 8639161 (-)
trim37 trim37,LOC102780947 other downstream 2205949 8512174 ~ 8543503 (-)
G164728 NA other upstream 245491 11024041 ~ 11025991 (-)
G164798 NA other upstream 1069055 11847605 ~ 11850970 (-)
pof1b pof1b other upstream 1483125 12261675 ~ 12293365 (-)
fam53c LOC101064484,LOC106511557,LOC103354649,LOC107090569,LOC102206536,LOC102303322 other upstream 1644624 12423174 ~ 12432292 (-)
sec24a NA other upstream 2052186 12830736 ~ 12864464 (-)

Expression


Co-expression Network