skp1 (skp1,Skp1,SKP1)


Basic Information

Item Value
gene id skp1
gene name skp1,Skp1,SKP1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 13157082 ~ 13162735 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777212.1
CCTCCAGTATCTGACAAAGCGACCGTCAGCCTCCGGGCGGCAGGACTCACCAGGTTGATCCAGAGACTTCCAGCCGCGATTGGTGCCTCCGAGTCTGTCAGGCCCTGCTGTTGACTACAGAGGAATTTCACCTCTGGATCCGAGTTAAAACATTTACGATAATGCCCACAATAAAACTACAGAGCTCCGATGGGGAAATCTTCGAGGTGGATGTTGAGATAGCCAAACAGTCTGTCACAATCAAAACCATGTTAGAAGATTTGGGAATGGATGATGAAGGAGATGATGACCCAGTTCCCCTCCCTAATGTGAACGCTGCCATCCTCAAGAAGgTGATTCAGTGGTGCACTCATCACAAAGatgaccctcctcctcctgaggATGATGAGAACAAGGAGAAGAGGACAGATGACATTCCTGTATGGGaccaggagttcctcaaagtggaCCAAGGCACCTTGTTTGAACTGATTCTGGCCGCCAACTATTTGGACATCAAAGGTCTGTTAGATGTCACCTGCAAGACGGTGGCCAACATGATTAAAGGCAAAACCCCAGAGGAGATCAGGAAGACTTTCAACATCAAAAATGATTTCACGGAGGAGGAAGAAGCCCAGGTACGCAAAGAGAACCAGTGGTGTGAAGAGAAGTAAAGGGGGAAGATCCTGCCAACACTCCACACTGAAAAAGAATGGTCCCTGTTAACTGGTTGCACTGGCGTTGTTCATACTTGTCAATATTTACATTAGTATATTAAGAGCCAcgcaccccccaccctccccttcCCTCAATTTCTGTATACCAATAGCATGACCATTTTAACTTTCCTGTGTGTTGTCATTAATTTAAACAAAGCTCTTTTCTGTTTCCACACACACGGTGTGCATTCTCATAACAAATAGTTCTGGTTTCATGGCTTCGTACCCTTAAAGATTAGAAAATGTTTCCCTATTGTTAATCGCTAAGGTTGTCTTTTTTACTGGACatgttatgtttttcttttagggtaattaatgaaataaaatggcTCTTTTGACAATGGAGA
>XM_039777213.1
CGTCAAGCTTAGATGCTAGCATAGTGCATGGTAATGCTAGCTGCCTGGTTCGCTTACTATTTAACCAATAGTAGACTATTGCTTTGGTTGTAAAAACACACAAGATAATGCCCACAATAAAACTACAGAGCTCCGATGGGGAAATCTTCGAGGTGGATGTTGAGATAGCCAAACAGTCTGTCACAATCAAAACCATGTTAGAAGATTTGGGAATGGATGATGAAGGAGATGATGACCCAGTTCCCCTCCCTAATGTGAACGCTGCCATCCTCAAGAAGgTGATTCAGTGGTGCACTCATCACAAAGatgaccctcctcctcctgaggATGATGAGAACAAGGAGAAGAGGACAGATGACATTCCTGTATGGGaccaggagttcctcaaagtggaCCAAGGCACCTTGTTTGAACTGATTCTGGCCGCCAACTATTTGGACATCAAAGGTCTGTTAGATGTCACCTGCAAGACGGTGGCCAACATGATTAAAGGCAAAACCCCAGAGGAGATCAGGAAGACTTTCAACATCAAAAATGATTTCACGGAGGAGGAAGAAGCCCAGGTACGCAAAGAGAACCAGTGGTGTGAAGAGAAGTAAAGGGGGAAGATCCTGCCAACACTCCACACTGAAAAAGAATGGTCCCTGTTAACTGGTTGCACTGGCGTTGTTCATACTTGTCAATATTTACATTAGTATATTAAGAGCCAcgcaccccccaccctccccttcCCTCAATTTCTGTATACCAATAGCATGACCATTTTAACTTTCCTGTGTGTTGTCATTAATTTAAACAAAGCTCTTTTCTGTTTCCACACACACGGTGTGCATTCTCATAACAAATAGTTCTGGTTTCATGGCTTCGTACCCTTAAAGATTAGAAAATGTTTCCCTATTGTTAATCGCTAAGGTTGTCTTTTTTACTGGACatgttatgtttttcttttagggtaattaatgaaataaaatggcTCTTTTGACAATGGAGA

Function

symbol description
skp1 Predicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within phosphorylation and ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human SKP1 (S-phase kinase associated protein 1).

NR:

description
PREDICTED: S-phase kinase-associated protein 1 isoform X1

GO:

id name namespace
GO:0035518 histone H2A monoubiquitination biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0051437 obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0016032 viral process biological_process
GO:0031519 PcG protein complex cellular_component
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0031467 Cul7-RING ubiquitin ligase complex cellular_component
GO:0004806 triglyceride lipase activity molecular_function
GO:0005515 protein binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K03094 SKP1, CBF3D; S-phase kinase-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777212.1 True 1045 mRNA 0.45 6 13157082 13162735
XM_039777213.1 False 991 mRNA 0.43 6 13157381 13162735

Neighbor

gene id symbol gene type direction distance location
ppp2cab ppp2ca,LOC107085894 coding upstream 1438 13144933 ~ 13155644 (+)
cdkn2aipnl cdkn2aipnl,LOC102794961 coding upstream 40178 13114883 ~ 13116904 (+)
sar1b sar1b,LOC107713617,LOC107603246,LOC102795722 coding upstream 283043 12865247 ~ 12874039 (+)
LOC120575626 NA coding upstream 357070 12797997 ~ 12800012 (+)
pitx1 pitx1,LOC100690583 coding upstream 396806 12747967 ~ 12760276 (+)
vdac1 vdac1 coding downstream 119160 13281895 ~ 13293010 (+)
c16h5orf15 kct2,clg07h5orf15,LOC106603818,LOC106911376 coding downstream 131555 13294290 ~ 13303379 (+)
fstl4 fstl4,LOC103365844 coding downstream 336343 13499078 ~ 13742749 (+)
irf1b NA coding downstream 959007 14121742 ~ 14126439 (+)
LOC120544474 LOC104921045 coding downstream 1019585 14182320 ~ 14196306 (+)
G165076 NA non-coding upstream 33029 13079779 ~ 13124053 (+)
G165078 NA non-coding upstream 35240 13120809 ~ 13121842 (+)
G165062 NA non-coding upstream 226808 12918433 ~ 12930274 (+)
G165026 NA non-coding upstream 269387 12830761 ~ 12887695 (+)
G165037 NA non-coding upstream 348989 12807784 ~ 12808093 (+)
LOC120544692 NA non-coding downstream 144637 13307372 ~ 13387090 (+)
G165161 NA non-coding downstream 308283 13471018 ~ 13471231 (+)
G165162 NA non-coding downstream 313266 13476001 ~ 13476222 (+)
G165179 NA non-coding downstream 587129 13749864 ~ 13750173 (+)
G165180 NA non-coding downstream 630121 13792856 ~ 13793465 (+)
G165043 ddx46,LOC102797024 other upstream 336373 12817231 ~ 12820709 (+)
G165033 NA other upstream 359782 12794560 ~ 12797300 (+)
lcp2a lcp2 other upstream 688768 12450762 ~ 12468314 (+)
LOC120575591 LOC104924162 other upstream 810030 12329957 ~ 12347052 (+)
LOC120544113 LOC104924140 other upstream 845213 12294593 ~ 12311869 (+)
gabra6b NA other downstream 1699926 14862661 ~ 14901003 (+)
G165556 yipf5,LOC102777143 other downstream 2793745 15956480 ~ 15958135 (+)
G165702 NA other downstream 3422407 16585142 ~ 16626346 (+)
LOC120544324 NA other downstream 3573929 16736664 ~ 16754289 (+)
LOC120544384 LOC100708800,LOC102793722,LOC102204659,LOC102301331,LOC103375969,LOC101471849,LOC101156840 other downstream 3647151 16809886 ~ 16837171 (+)

Expression


Co-expression Network