ttc3


Basic Information

Item Value
gene id ttc3
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 8388467 ~ 8422511 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777316.1
TGAACCTCCCTCCCCTTTTTCATCTATGATGATGACACGCGGCGCAGCGTGAACAGTTTTAACTTCCGCACACTAATATGAACAGGACAAGCCCAGACTACTGCTCGGCGTTCACGCAATAGTTATAACAAGATTTGGACAAAATGTCAGACTCTGATTCTGACTGTGGTGACAGGGAAGACGTCAAAGTCAAAGACCGAATGAATGCTcaAATATTTTCCAACAATGCTACAATTGTTGCCCTCCGTCCATCAGagGAGGTGTTTGAACGATGGAGTCGTATTGCTGTTGAAACCAGAAGAGATGCTGGGGAGCGAATGAGAGTTTGTGCCTTCTGGCTTCCCATCCTGTTGCAATGGGAAGAGTCCAGCATTACTGCCTGCTGGGCTTCAGAAATAGGCCTGATCAACTCAAAGGACGGTGATCTGACTCTGAAGCAGCTGTCGAGGATCGAAACGTTGGAAGCAATCCTTAGAGCCTTGGAGAAAGGAACTGTGAAAAAGAACCAAACAAAGCAGGTTATCTCCATAAGTAACAAGTTTAACTTGCGTTCCCAAGAGGTTTTGGATGATGCGCTACAATGGTTGGAGCGAACAGGAGAACCTGGTATTCGCCATTGCGTCATGGATCTCGGCCATGCACACACCTGCTTCCAAGCCCTGCACCTTATCTTCACAGAGTTTGCAAAGTATATTCATGAAATGGGTACCAACTTGGAGAAGACGATGAAGTCACTAATGGCTCGACCGCAGGAGTATCAGCTAGAGAAAAGTGAAGAAATGAAGAAGAAAGGAAATGAGTTCTTTCAGAAAAAGCAGTATGAAGATGCTGTGAAGTTTTACTCCAAAGCCATCAAATATTACCCTGACAACCACATAATTTATGGAAACCGAGCCCTATGCTATATCCGGTGTAAGAAATATCTAAAAGCGGTTAATGATGGAAAACGTGCTACGCTGATAAAACCACGCTGGACAAAGGGTCACTACCGCTACTGTGAGGCTTTGTTCTCCTTGGGAGAGTTCACAAAGGCAATTGAAGCCAACATTTCAGCCCAGGGTCTTTGTAGAGACAACCACGAGGGGATCAAAGACCTGGAACAGCAACAGCAGAAATTCTTCACTGAAATGCCCGAACCCAAAGTTGTACACCCTAAGAAAAACCACATTAAAAGatcGGAGAGCACTAACAGAGCACGTGCAGTGGAGCCACAACATTTTCTGAAAACTACTAAAAAGATTGATCCTCCTCCACAGAATAAAGTCTCTGACGTTAAATTGGAAAAGCAACAAGTGAAAAATGAAAGGACTGCACAGTCAGATGGCAGTACTAAAAACTCTAAACCATCAAAAAGTGAGCTTTCTTCAAAGAATGGGAAAGGAGAGTCCAGCACCCCAACAAAGAAGAAATCTAAGAACAGAAATCAGCCTGAAGATGAGAAACTGGATGGCAGTAAAGCAGATGTGTGTGAAGAGTTGAGATCCTTGGTGCAGGACGGACACACTGCTCTGGCCGACCTCCGCAGCCACAATGCAGAGCAGGCCTTCAGGAAGGCACTGGCTATACTGGGAAACAGCTCACCCAAGGAACTTGGACTTTCTACGCTGGATGTACTTTTGTTGCCATATGGCCGCGCTACAGCCCTAACAGAAATCGGCCAGCCTGAGGAACTTAGAGAAGCACAAACACTTCTGGAGAAGATTAAATCCTTTGAGGAGAGGACCTTTCAGTGTCTGGTTTACTACGCCATCGGGAGGGTGCATCTCAAAGAGAACAGGTTTGCAGTTGCTCTGCGGCAGTTTTCAGATTCACTGCAAATGGTCAAGAATCAAATAATCCCGGGTAAACTCACCTGGCCTTTAACGAAAGAGATTGTCAAAGAAACACAGCCGGACTATTTCAAGGACATTTTGGAGCAGGCTATAGAGTTTTGCAGATTTCCTCCTAATCCCGACGCCATTTGTCGACTTGAGAAATGCCTCGGCCATTTAAAAGCTGAAATCTACTTTACTGACCCAGATTTTAAGGGCTTTATTCAAATATGCTGCTGTCGGAGCTGCATTGTTGAATACCACATCGCCTGTTGGAAGGCCCTCAAGACATCATCTTTCTGTGACAAGAATGAAAAGGATTTCCTGCAAGAGCCGTGTTTGACTCCAGACTGTGTCGGCCAAATCTGTTGTATCAAGATCTTTGGTCCGACGGGGCTGGTGAAGTGTAAGTTTGAAGCTGCCATTCCAAAACCACATAATCCAAAGAAGCCCAAAGTGAATCAGAAATGTACAAGTCTGAAGAAGTTAAAATCAAAAGAAGGGCACAGACTCAAGAGAAAACAGCATAAGCAGTCATTTCAAGAAAAGCAGGCGATCAACGATGAGATTCTGCAGCAGAAAGAAGACTCCGCAACTGAGAGTCAACAGAAAGCCTGGTTGCTGTACAGGGATAGAGTTCTTCTGCAGATCAGCCAGAACATGGAGCTGCTCAGAGAGGAGAAGGGCCTCCACTTGTCGGCCCTGACCTGCAGTCTGAAGCCCTGGCTGGAGCTGGACTCGTCGAGGGGGAACCAAGTAGCTGTCAGGATGTTGAACTGGCAGCTGGAGCCGCTGGAGAATCTAGGTCAGGCCGTTGAGCTGCTACTGGAGAGGAAGAACCGGGTTTGGGCTCGTGTACTTATTCAACTACTCAGTGCCTGTCAGGATATAAATCCTAAACTCAGCAACTGGGCGTGCCAGCTCAACAATGCAGGTCTGAATGCAGCCAAATCCTTCATTGAGCTCTACGCAGGACACTTGGAGCAGCTGGATCTGGCTTTTCTGCTCAACTTTGGCCCATTGCAGGACGTGATTATAGAGAAGCTCGGTACTAGGCCGGAGCTTTTTTCAAGCATTGGCTTGACTGTGACTGAATACCTAAAACAGGCCCCCCCACATGACATGAGACTCTTTATCTGGACTCTGGAGGAGCATAGGGATGGGTATCTCTCTTGCCACCCTATACTGGATGAGTATTTTGATATGATGGATGGAAATTGTTCGGTCTTAAAAAAGTCTGATGAAAATCAAAATaatTCTCCTATCAAGAGTCGAGGTCGgaagaagaaacagaaagagCCAAGGCGTCCCTCTGAAGTGTGTCCCCTCAAATTCCTGATGAAAAGAGTAACTCCGAGAGATGAATGGGACCAAGACTTTTTTGAAGATGACTCTTTATCATTCCTTCACCCTGGTGATCCGTTCAGTGTACCGAGTCACCTTCGAGAGCAAGTGGCCGAATTTGAGAACCAGTACAACGGCAACAGACACAAAAGtcactttaaaaacattttggacAACAACCCCGACCCAACAAAAGAGAGTTTGTATGACTACTTTGCTCAGATCTTGGAGGAGCACGGTCCGCTGGTTGCTGAGGACCCTCTGCTGGTTGGTGAACTAGGGAATTTCCCTTCAGTGGCTCAGCTGAAGATGAAGGAAGCGGGCGGCTTTGAGCCCTTCCTCCTGGAGTCCCTTCGCTTTATAAAGATGGGGAGCTGTATCGGCCTGGCGAAGCATGCCGTTACGCTGCAGCAGGCTGGACACGGAGCCAGCCTGGATGACCTGGATGAAATCCACTCAGACTCTCCCTCTCCTGATTTTGAAGCGGGTCAAGAATCTGCTTTCACGGGCTATCTGGACGCTTTTTCATCTGCACAGACTATCTATCCCATCCTCCCAAGTCCTTATGTATTTGGCTCCCAGTCTCCTCTGCTTGGTCAGTCAGCTAGTGGAGGGACTAGGAATGATCCATATCACCATTGGTCTAATGGTGACAGTCAACAGCAAGTCTCTTTCTTTTTACCTAATGGTTACGAGGAGCTAGATCTAGCTACCAGTGAATTGGATGATGGATTTTTGGAAACGTCTTCAGTGACAACTGAAGAAAGctttttaaagaaacatgcAGCAGTACAGACGTGTCAGGAGACCATGAGGAGTGTAGCGGTGAATACAGAGATTCATGAGCGTTTTGAGAGCTGCCAGGGTGACCTCAACAAAAAGCAAAAGGGCAACACGAAGTTGGAGCAGCAGATCAAGAAAATGGTGAAAGGCTGTGACAAAGTCAATCTGAGACATGAAGAAGACATTGCTCTCCTCGAGGCAGAAGTTCAGAATATCACTGCCAATATACAAGTGACCAATAAGGAGCTGACACTGTTCCAGCAGAAGCTGGAAGAGGAGGTGAAGAAGGACCAGAAGGAGAAGAAAGCCAACCAGGAAGGACTGAAGTCCCTGAAGTTGGAGATAGAAGAGCTGGTGGAGCAGCACGGCAGTCTCTCTCGAAGCATCCGAGAGAAGAAAACCAGCTTTGACGCAAAGTTGAGTGATTTCCTTGAGCTGGGCAATCAGTCAGCAGCTGAGAAGATGAGTCTGGAGGATGAGATCAAGCGCTGCAAGGTCTTGTTTACCTCAGCAACCAGGAGATCTCACACGGCTCAGGTGTCTGTAGTGGAGAGCGGTCAGGATCAGGGTTTGTACAGCCTCTACAGAGAGCTGGCCAATGGCAAAGCTCTGCAGACCAAACTGGACGAAGCAGCACACAGATACCCATCTGCAGAGCTGGAAATACTTAGAAACAGCTGGAGAGTTAATGTCCAAGAAGTTGAAAAGAAAATCGCCGCTGCTGAGGCACAGTACAAGGAGCAGCTGGATCAAGTGAAGAATGGTAGAAGAGTCAGCGAGTTGTCTCCAGTCAACATCCACAACCAGCCGGAGCCTCCAGCCGCACCACAGTCTGCGGCAGCCAAGGAGTTTGCTCCTCCACCCTCAGCCTCCCACAGAGCTTCACCCATCATCCACCCGTCTGCAGCTGAAGCTCCGGCCTCTCTGCCTCAGCACAAACCTCCGACCAGGGCGCTGGAGGCTCCACCCAACACGGTGTTCGACAAAGCCATAGAGCGCCTGACCATCATTTTTCCTGAGAAAACGAGGTCCGACTTGATGAGGTATGTTCAGGAGTTGCGTTCATCCAGCGGGGGCAGCCTGAACAGCATGGCATTGCAGGATATGGTGGGCGGAGTGACCCAGCTGATCCTGGACCATCAGgaGAAGCTTAATGCTGCCAAATCGAACATGAGACGTGAGAGTTCAGCCAATGCTGCCAAATCAAACGTGAGACTCGAGAGTTCAGCCAAGTACGTCACCCCGCCTTATGTGGCGCAGGTCTGGCAGCCACTTGGACCCCCCCAGAGAGCCACACACTCCAACGCACTGAATGTCGAGGATCCTTGCATCATCTGTCACGAGGACATGAGTCCAGATGACATCTGTGTGCTCGTGTGCAGACACAGCTTCCATGACGAGtGTATACGGTCGTGGCTGAAGGAGCAGAGCACCTGTCCCACCTGCAGAGAGCACGCATTGCTGCATGATGATTTCCCCGCGCTGTCCGCCAGAAGACGCCAAGCTCAATGATGTCTTAACCCTTTTCCTTCAAGTATGCTTTtatctccctttttttttaaatcacttcttTCATTATACTCTAAAAACACTTTGATTTTTGTATCGTTTTCAATGTTAAGACATTCAATTTCTATcctttgaataaacaaaacgTCTTGTTTTGAA

Function

NR:

description
E3 ubiquitin-protein ligase TTC3

GO: NA

KEGG:

id description
K15712 TTC3; E3 ubiquitin-protein ligase TTC3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777316.1 True 5606 mRNA 0.48 46 8388467 8422511

Neighbor

gene id symbol gene type direction distance location
LOC120544532 NA coding upstream 1710 8382048 ~ 8386757 (+)
kctd7 kctd7,LOC102776841 coding upstream 40878 8335532 ~ 8347589 (+)
pgk1 pgk1 coding upstream 72743 8295975 ~ 8315724 (+)
pgrmc1 pgrmc1 coding upstream 97429 8282435 ~ 8291038 (+)
znf346 znf346 coding upstream 384305 7991895 ~ 8004162 (+)
ppm1e ppm1e,LOC102780278 coding downstream 41069 8463580 ~ 8510083 (+)
pou2f3 pou2f3 coding downstream 122706 8545217 ~ 8568575 (+)
mks1 mks1 coding downstream 288750 8711261 ~ 8719239 (+)
ap2b1 ap2b1,LOC103360248 coding downstream 298528 8721039 ~ 8745957 (+)
LOC120543844 NA coding downstream 324353 8746864 ~ 8772111 (+)
G163980 NA non-coding upstream 20379 8366403 ~ 8368088 (+)
G163977 NA non-coding upstream 45811 8339136 ~ 8342656 (+)
G163964 NA non-coding upstream 124292 8259835 ~ 8264175 (+)
G163907 NA non-coding upstream 364269 7944241 ~ 8024198 (+)
G164115 NA non-coding downstream 172619 8595130 ~ 8595421 (+)
G164135 NA non-coding downstream 211549 8634060 ~ 8634308 (+)
G164136 NA non-coding downstream 214320 8636831 ~ 8637045 (+)
G164162 NA non-coding downstream 273934 8696445 ~ 8696878 (+)
G164163 NA non-coding downstream 275721 8698232 ~ 8698973 (+)
kcnj6 kcnj9,kcnj6 other upstream 26024 8353458 ~ 8362443 (+)
LOC120575583 LOC101066275 other upstream 93187 8292709 ~ 8295280 (+)
nsd1b nsd1 other upstream 132928 8212479 ~ 8255539 (+)
LOC120544209 NA other upstream 188355 8197802 ~ 8200112 (+)
G163932 NA other upstream 310774 8074947 ~ 8077693 (+)
LOC120544397 LOC101484903,LOC104947545,LOC103360243 other downstream 205899 8628410 ~ 8630861 (+)
G164156 NA other downstream 257622 8680133 ~ 8682054 (+)
bckdk bckdk,LOC102785460 other downstream 542849 8965360 ~ 8987592 (+)
G164466 NA other downstream 1785660 10208171 ~ 10208658 (+)
G164531 NA other downstream 2138132 10560643 ~ 10562266 (+)

Expression


Co-expression Network