LOC120543944


Basic Information

Item Value
gene id LOC120543944
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 2476851 ~ 2487119 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777373.1
ATGAAGATCTCTGTGAGTTTTACGCTGTGGCTGCTGCTCGATGCCGTCCCTGCAAGTGAAAGTACTGAAAGCCAGCTGGCTTCTCCTCCAGACATCTATGCTGCACTGAGAGAGATGACCGCCTCGTTGGTTCAACTGAAGGCGGACATGGCGCTGCAGACTCAAGAACAAGCCCAGCTGAAGACTGAAGTGGATAAGCAGAAGACTGAAGTGGACAAGCTGAAGACTGAAGTGGACAAGCTGAAGCAACAACAAATAGtccaaCAGGTTGCATTCTCAGCCTCTCTGCATGCTGGTGCAGGCAAATCAAACCCTGGACCCTTGCCCTCAGACACTACCCTGATCTACAAACACGTTATCACCAACATGGGAAATGCCTACAACTCAAACACAGGTGTGTTCACTGCCCCGGTGAGAGGAGCGTACAACTTTGAGTGGACAGTTGGTGCAAATGGAGACAACAGCCACGCTTCAGGTGCTGTGTTGGTCAAGAACTCAGAGAATGTTCTCTTGGCATACGAGAATCAGGCGGCCGGTTTTATGAGTTCTTCTAAAGGCATTACGCTGCTGCTAGAGGTGGGAGATGTTGTGTTTGTGCGTCTGTGGCGTGACTCCGTGGCATATGACAACTTAAATCACCACACCACCTTCAGTGGGCATCTGCTGTTCCCCATTTAAGACAGAAACAACAGCTCTGTGATAGTCATGCAGGTTTTTGTTGTCTTAAACAAGTCTTCATAGCACTTCATAGATTTGATCTGATTTTCCTCTGCAtccaaataataataagtaataattgTCGACAGGAATCTATTTTCCATCAAATATAATGTGGTTAATGTTTCTGATTCTCtcttgtttctgtcattttaatcaaataataaaCATATATCATTGCAATTA

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0000255 allantoin metabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko00630 Glyoxylate and dicarboxylate metabolism
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777373.1 True 903 mRNA 0.45 4 2476851 2487119

Neighbor

gene id symbol gene type direction distance location
LOC120544242 NA coding downstream 95636 2379567 ~ 2381215 (-)
ncf1 NA coding downstream 232764 2235522 ~ 2244087 (-)
trnae-cuc_26 NA coding downstream 246756 2230024 ~ 2230095 (-)
st6gal1 st6gal1,LOC103354655 coding downstream 250395 2186780 ~ 2226456 (-)
pcf11 pcf11 coding upstream 326942 2814061 ~ 2855055 (-)
LOC120544248 NA coding upstream 367907 2855026 ~ 2868330 (-)
LOC120543771 NA coding upstream 386110 2873229 ~ 2898462 (-)
LOC120543770 NA coding upstream 395236 2882355 ~ 2884569 (-)
LOC120543768 NA coding upstream 437363 2924482 ~ 2937752 (-)
G162866 NA non-coding downstream 31583 2428273 ~ 2445268 (-)
G162860 NA non-coding downstream 98235 2368495 ~ 2378616 (-)
G162854 LOC103354655,LOC102298752,LOC102215500 non-coding downstream 129158 2251581 ~ 2347693 (-)
G162832 NA non-coding downstream 217986 2257276 ~ 2258865 (-)
G162833 NA non-coding downstream 225157 2248270 ~ 2251694 (-)
G162873 NA non-coding upstream 21878 2508997 ~ 2509289 (-)
G162874 NA non-coding upstream 28613 2515732 ~ 2516016 (-)
G162875 NA non-coding upstream 32721 2519840 ~ 2521948 (-)
G162878 NA non-coding upstream 83447 2570566 ~ 2570799 (-)
G162879 NA non-coding upstream 96350 2583469 ~ 2583703 (-)
LOC120544171 NA other downstream 585428 1887629 ~ 1891423 (-)
G162787 NA other downstream 640349 1835969 ~ 1836502 (-)
G162399 NA other downstream 1036033 1437253 ~ 1440818 (-)
G162398 NA other downstream 1052450 1381761 ~ 1424401 (-)
G162396 NA other downstream 1118328 1358186 ~ 1358523 (-)
G162910 NA other upstream 339970 2827089 ~ 2829594 (-)
LOC120543772 NA other upstream 550804 3037923 ~ 3095474 (-)
LOC120544249 alg8 other upstream 691648 3178767 ~ 3233282 (-)
LOC120544311 LOC101470105,LOC107380983,LOC102214284 other upstream 698851 3185970 ~ 3198248 (-)
G163259 NA other upstream 1383206 3870325 ~ 3874115 (-)

Expression


Co-expression Network