LOC120543945


Basic Information

Item Value
gene id LOC120543945
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 2194360 ~ 2197235 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777374.1
taaaAACTTCTTTATAGTTATGTGCTttattataatagcataacatGAAATCAAAAGACCTGAGTATTTTCTGAAAAAACAACTGAACCTCTCTGTTAATCATGTGTTTTAGACACAGAAAGGATGGACCTTTACTCAATCACGTACGCAAACTGACCATCTGTTTCCCATCAGGCCAAATTCCATTCACTAACTTTATCACATTAGGTCATCAGCCTCCCAAACTGGTTGCCCCTCATTTCCTAAATCAGCCTGACTGAATAACAGGAAAGACTTTCTATTCATGTAGATATGTGATAGAAAGCTGATTTGCATGGACCTTTTCATGAACCGAATAACTAACTGGACTCCCAACTCCTTTAATAAGACACTGTTGTGAACAACGTTCAGTCACTTTCTGCACTTTGCTGGGAGAGTAAACTAGATCTACTTGCAAGTAAAAATGAGCTTTTGAGAGAACTCCGGTAATTTTGTCCACACATTCAACATAAGAAGATTATATAAAGCTGCATCCTGACAGGAAAACAAAGTCATAATAAAACAGAATGAAGATCTTTGTGAGTTTTACGCTCTGGCTGCTGCTCGGCACCATCTCAGCAAATGAAAGCGTTGATTGTCAGCAGACTTTTCCTCAAGATATCTACGCTGCGCTGAGAGAGATGACCGCCTCGTTGGTTCAACTGAAGGCGGATGTGACAACGTTGCAGAGAGAATTCCTGCAGACTCAAGAACAAGGAGCACAACAGAAGACTGAAGTGGACAAGCTGAAGCAACAACAGCTAGtccGACAGGTTGCATTCTCAGCCTCTCTGCATGCTGGTGCAGGCAAATTAAAGCTTGGACCCTTTTCCACTGACACTCTTCTGATCTACAAACACGTTTTCACCAACATCGGAAATGCCTACAACTCAAACACAGGTGCATTCACTGCCCCGGTGAGAGGAGCGTACAACTTTGAGTGGACGATCAATGCAGAAGGAGACGGCAGCCGCGGTTCAGGAGCTTGGTTGGTCAAGAACTCAGAGAAGGTTGTCGTTGCATACGAGGAACAGCCAACGACCGGTTATATGAGTTCTTCGAAAGGCATTACGCTGCTGCTGGAGGTGGGAGACGTTGTGTTTGTGCGTCTGTGGGCTGGCAGTTTGGTGCATGACAGTGAAAGTCACCCCACCACCTTCAGTGGGCATCTGCTGTTCCCCATGTAAGACAgaaacagcagctctgtgataGTCACGCAGGTTTTTGTTGTCTTAAACAAGTCTTCATAGATTTGATCTGATTTCATCTGCatccaaataataataagaatttTTTGTCGACAGTAATCTATTTTCCTtcaaatacagtgccttgcgaaagtattcggcccccttgaacttttcgaccttt

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko00350 Tyrosine metabolism
ko04916 Melanogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777374.1 True 1389 mRNA 0.43 4 2194360 2197235

Neighbor

gene id symbol gene type direction distance location
LOC120543937 NA coding downstream 133719 2058679 ~ 2060641 (-)
LOC120543938 NA coding downstream 219054 1963705 ~ 1975306 (-)
apbb3 apbb3,LOC102778778 coding downstream 336766 1837576 ~ 1857594 (-)
LOC120544174 NA coding downstream 373725 1813414 ~ 1820635 (-)
LOC120544161 NA coding downstream 446431 1738321 ~ 1747929 (-)
trnay-gua_44 NA coding upstream 9885 2207120 ~ 2207208 (-)
trnae-cuc_26 NA coding upstream 32789 2230024 ~ 2230095 (-)
ncf1 NA coding upstream 38287 2235522 ~ 2244087 (-)
LOC120544242 NA coding upstream 182332 2379567 ~ 2381215 (-)
LOC120543944 NA coding upstream 279616 2476851 ~ 2487119 (-)
G162847 NA non-coding downstream 5172 2188428 ~ 2189188 (-)
G162846 NA non-coding downstream 6250 2187524 ~ 2188110 (-)
G162817 NA non-coding downstream 102590 2058079 ~ 2091770 (-)
G162819 NA non-coding downstream 125520 2065964 ~ 2068840 (-)
G162799 NA non-coding downstream 256027 1936897 ~ 1938333 (-)
G162831 NA non-coding upstream 23417 2220652 ~ 2256964 (-)
G162851 NA non-coding upstream 37297 2234532 ~ 2286444 (-)
G162852 NA non-coding upstream 41049 2238284 ~ 2238984 (-)
G162833 NA non-coding upstream 51035 2248270 ~ 2251694 (-)
G162854 LOC103354655,LOC102298752,LOC102215500 non-coding upstream 54346 2251581 ~ 2347693 (-)
LOC120544171 NA other downstream 302937 1887629 ~ 1891423 (-)
G162787 NA other downstream 357858 1835969 ~ 1836502 (-)
G162399 NA other downstream 753542 1437253 ~ 1440818 (-)
G162398 NA other downstream 769959 1381761 ~ 1424401 (-)
G162396 NA other downstream 835837 1358186 ~ 1358523 (-)
LOC120543939 NA other upstream 144915 2342150 ~ 2651403 (-)
G162910 NA other upstream 629854 2827089 ~ 2829594 (-)
LOC120543772 NA other upstream 840688 3037923 ~ 3095474 (-)
LOC120544249 alg8 other upstream 981532 3178767 ~ 3233282 (-)
LOC120544311 LOC101470105,LOC107380983,LOC102214284 other upstream 988735 3185970 ~ 3198248 (-)

Expression


Co-expression Network