foxi3a (LOC105026277,LOC108269392,LOC103035522)


Basic Information

Item Value
gene id foxi3a
gene name LOC105026277,LOC108269392,LOC103035522
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 12471784 ~ 12473935 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777442.1
CACTGGCTGTGTTTGGCTtctacaaacacacatttttatataatCACACTTTGAGCCCGAGCAGAAGAGGACGTCACCACAGACAGATGTTTATGTAGAGACTActagagagacagaaaagtgaagaaagaaagacacaaagGAAAAGAGTTTCCAGCATGACGTCCTTTGTCACAGAGAAAGATCCATCTGCCTCCCTGTGTGGACGATCTCTCCCCCAACAGGAGCTTCCTTCTCTGGGCCTCGATCCGTCTGACTTCAGCCTGTACAgccctcctgctcctcctgagCCCAGCCTGTCTGCATCAACGTGGCTCCCAACTTCTAACAACCACAGCGACCCTTACCTCTGCTTCAAAAGCCCAGAGCCAGACTCAATCTCTGGGGCCACAGGACTCCCTCCAGGCTTCTTCCCTTATCTCTACAGCCTCCAGAGGCCCCTGTTCCCCAGCAGCCCCTGGTTCTCCTTGTCCACCCCGGAGGACATGCTGCGCCTGGTCCGCCCGCCGTACTCCTactctgcactcatagccatGGCAATACAGAGCGCACCTGAGCAGCGGCTGACACTCAGCCAAATCTACCAGTACGTCTCAGACAACTTCCCCTTCTATAGCCACAACAAGGCCGGCTGGCAGAACTCCATCCGCCACAACCTGTCGCTCAACGACTGTTTCCGGAAGGTTCCCCGCAACGAGAGTGACCCAGGTAAAGGAAACTACTGGATTCTGGACCCAAACTGTGAGAAGATGTTCGACAATGGAAACTTTTGCCGCAAGAGGAAGAGCAAGAGTAAGAAAGATAACGTGACCACTGGAAGGAaaacttcctcctcctcatcctcggATTCTGGCTTGTCAGAGCCCAGCCCTAAAATTCCCAGCATACACTGCAATGGCGGCAGCAGTGGTGGCGGCAGCACTGAGCTCCCTGCACTCTCAGACACTCCCCCCGGCCTCAGCAGCTTCCTGTGTCCCCTCCAGGAttcccttctccctcctcttccttctcacGTCAGCTCCCCTGAGCTGTACATGCAGGTACCGGACCATGCCTcaccccctcctccttctcAGGGATATGCCTCTTCTTACTCGCCTGGCGCCGTGGTGCCGCAGTGGGACGCCTGcagctcctctcctcccctctacTCCTCCCTTCATCACTCcttacctcctcctcctcccctcccgtCTTCCCAGTTGACTCCCCCACACTTCTCCTACCTCGCCGACCCCCAGGCCGGGTCGCCGCCTCTCTACGCCGACCTGCAGACGGCGTCCTGTCTTCTGACGGACTTCCAGGAGGCccagcagctgctgcagcttcAGTGTGGGCCTCTCTCCTCTGGGGGCTTCGCTGATAATCTGCCCCTTGACTCTCTTGTTCTCCAGCAGtgacacaaactgaaagtgatACCTCCAGAGAACATCTTGTGTTTACACTGAGAACTGATGCGAATCTGATGTTGAATTTTAAACTTTGTaaagtattttttaaatgtgtaaaatgaCTCCAGGTGGATGTTTGACTGAATTCAAACCAGCCAGAATGCACTATGCTAGCTGTAAAATGTGTGGGAATGTTtgtatttatcatttttttgGTGGGTGAATGTTTTTTATAGTGTGAATATcagttgaatgtttgtgtttgtaataaaaacaaaaca

Function

NR:

description
forkhead box protein I1-ema-like

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0009957 epidermal cell fate specification biological_process
GO:0007389 pattern specification process biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005667 transcription regulator complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777442.1 True 1672 mRNA 0.53 2 12471784 12473935

Neighbor

gene id symbol gene type direction distance location
zmat2 zmat2 coding upstream 24169 12444150 ~ 12447615 (+)
LOC120575701 LOC103354648,LOC100698795 coding upstream 53405 12417511 ~ 12418379 (+)
LOC120575699 LOC103363899,LOC104924193,LOC102296018,LOC102776456,LOC104941697,LOC108250331 coding upstream 79954 12382817 ~ 12391830 (+)
btg4 LOC104941696 coding upstream 92870 12375900 ~ 12378914 (+)
zgc:158291 zgc:158291,LOC107387148,LOC104965395,LOC101076515,LOC103395138,LOC107697335,LOC107675183,LOC107587290,LOC105901510 coding upstream 363316 12103785 ~ 12108468 (+)
larp1 larp1 coding downstream 55380 12529315 ~ 12588586 (+)
LOC120544088 LOC102798793,LOC104924243,LOC101475378,LOC100699679,LOC101078553,LOC103363335,LOC108238083,LOC107386699 coding downstream 137921 12611856 ~ 12632887 (+)
pitx1 pitx1,LOC100690583 coding downstream 274032 12747967 ~ 12760276 (+)
LOC120575626 NA coding downstream 324062 12797997 ~ 12800012 (+)
sar1b sar1b,LOC107713617,LOC107603246,LOC102795722 coding downstream 391312 12865247 ~ 12874039 (+)
LOC120544195 NA non-coding upstream 119599 12348937 ~ 12352185 (+)
G164844 NA non-coding upstream 375960 12095579 ~ 12095824 (+)
G164759 NA non-coding upstream 727822 11743690 ~ 11743962 (+)
G164750 NA non-coding upstream 755245 11716325 ~ 11716539 (+)
G164749 NA non-coding upstream 767639 11702480 ~ 11704145 (+)
G164894 NA non-coding downstream 15739 12489674 ~ 12541314 (+)
G165000 LOC103376870 non-coding downstream 120586 12594521 ~ 12594746 (+)
G165037 NA non-coding downstream 333849 12807784 ~ 12808093 (+)
G165026 NA non-coding downstream 356826 12830761 ~ 12887695 (+)
G165062 NA non-coding downstream 444498 12918433 ~ 12930274 (+)
lcp2a lcp2 other upstream 3470 12450762 ~ 12468314 (+)
slc25a14 slc25a14,LOC103146102,LOC106926506 other upstream 100917 12294450 ~ 12370867 (+)
LOC120575591 LOC104924162 other upstream 124732 12329957 ~ 12347052 (+)
LOC120544113 LOC104924140 other upstream 159915 12294593 ~ 12311869 (+)
klf8 LOC101477270,LOC100704719 other upstream 509895 11865601 ~ 11961889 (+)
G165033 NA other downstream 320625 12794560 ~ 12797300 (+)
G165043 ddx46,LOC102797024 other downstream 343296 12817231 ~ 12820709 (+)
gabra6b NA other downstream 2388726 14862661 ~ 14901003 (+)
G165556 yipf5,LOC102777143 other downstream 3482545 15956480 ~ 15958135 (+)
G165702 NA other downstream 4111207 16585142 ~ 16626346 (+)

Expression


Co-expression Network