XLOC_004885


Basic Information

Item Value
gene id XLOC_004885
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 35838288 ~ 35842371 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010978
ttggaaatgaaataaaataataatagtttgctCAAAAATCAGACATTCCTATATGGCTTGAAGcagtattgttgttttatttcaataaaatactattactgttttaataaatgttctcgttcaacttttaaaaaatacattttacagctTCATTTGGAAGTTGTAGTAATTTAGTTcctttaatttgcttttattttttattatattttaattttcagtTAAGTCTGAATCCATACGGCAGTTATTACTGTATAAAACTGCACCATTTACTCTAAAACTGTGTCACATATACGTATACTTATACttacacatatatttatttactgttaaatCTGATTCATTTCCATGGCTAATAGTCCTTAaaaacaatagggtatatgcagacgcatgcagaaagacttttaatttgtcagtaaccttgGTCAaacgcttccagtgaactgtattCCGTTACAAAATCagcatgtttaaggtctgttttctttaaaaatcaacaatcttCACCGCCTAAAAGATACACgctataaagtgggtctcagaatgtacaagaaacactgcattaaattatatttttctatgccatgtctttaaaatattttaatttattttactccaaTATTTCCAATGGTGTTTCTGGGCTTGCCCGTTGATGCCTGCGAGTAAACGCCTTTTCATCTCGGTTTACGCTTCAATAACTAACTGAACACTGacgtctatttaactgattatagtttaattacattacaacatctatACTGTAAAAGAAACTGTATATAATTGAAAAGTCACATTACCCGTTCACCGGACTGTTAGctgtatgggaagaaacactagctctgcatataccctattgtgaaACTCCCTGCCGTTTCCCTCCCTGTTTTTCTGCCACTTTAAGACAATGTTGATTCAGGAACACCATATTCAGCAAACAATAGTCGCTTTTTTATTGAACCCAGCTCTGCTGTCCCATCATACAGTACACACTGCTCTTAAATATCTATCCatctgaattttcattttttattcatctACCCAACTTTCTACATCCATCTCAACTTCAATCTCATCTCACCATGAACATCAACGTACCATGAGAGCCGCTCAATCTACAGTCTACCTAAAGAGACACTCTATACTTATCTTGTCCATCTACTGCTTTACTGCCAACATACCTtctaaaactctctctctcttctagCTGCGCTGCCATCACTCCCTGACATCTGAACTAGAGCTGGGCTTCACCGAGGGCTCTGTGTGAGCATGTTTGGGTTTCCTGGGGGCTTCTGGGACATCTCCTGTAATTTAGAAACAGCCCTGTGAGGCACCGGGACAAAAGGCATCTGTATTCAACAACAAAAGGAGTGGGGAGTGGGGATGTTTGTGTTGGTGGGGGATTAGGCTCCTCTCTTTAATACAAAGGGTTAACTTCTCTGCTCCATTTCAAAGCCAACTTCTCCTCCCTTGTCTCCTGTCCACTGTAATCTCCACCCATTTCCCTATATTCCAGTGTGGAGGAGAGACGGGGAGACGGCATGAGGTTACAGAAACATCTGGAACAGTTTACTGTGCATGCCTTTGTGCCCGGCGAAATGGGGCTTTCCAGTTTCTTGGGTGAAACTCAAAGGCGTGCAGATTTTACACCCATtttcaaataatcaaatgtaagaACTGCTATTTTGCATTGTCACATTTTCCATGGTGATTCATCATGTTACCACAATGGGAACTGTCATTAACCTACTTTAGAAAGTTTTTGAGTGTGATTTTAGTCAgagtaaattttttttactatattaagAGTGAAAATGGCAATAACACAAgcataaattaaacataaatcatGTTGTATAAATACTTTACAacttaaataatatatttctGCAATATAGTGTTTTTttgcaacccagactcattcagaaaacatacccctgtatacatatctggagagaggaaaaaaaacgaTGCAGGATCTACATTTTTTGCGTTTTTtgtttttcgcaaatccacctgTGTACGCTTTCTCAGATCTCAAATACCTCTTGGGAgtgtcattcgcgcctgctgttctaacgcactgattgacccgcccactcccttccctaaacccaatcacaGTGTTTTAATCCAGAAatagaaaagccccctgattttaaccacattttcagattttaccacattctcaccctgttgtttattgtctattttattttttagcttttgtttttcttacgctttctggaaccgttcttaaCCGGAATCAAACCCTGTTGTCgcagtcaactccgctctgcatctcagGTCTGCCAACATATATGTCAAGCTagcagacaaactggtaacaacggaAAAGCCgaccatacggagCTCTATAAGCCGCTCTGCAAACTCCTGTCTGATGACTTCTGACAGGCTGCGACGCTCTTCTGATAACTTATCACG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010978 True 2445 lncRNA 0.38 2 35838288 35842371

Neighbor

gene id symbol gene type direction distance location
XLOC_004880 chmp6b coding upstream 130930 35587971 ~ 35707358 (+)
XLOC_004884 NA coding upstream 131340 35705133 ~ 35706948 (+)
XLOC_004883 baiap2b coding upstream 149049 35654749 ~ 35689239 (+)
XLOC_004882 baiap2b coding upstream 185237 35650321 ~ 35653051 (+)
XLOC_004881 FO681473.1 coding upstream 226474 35611698 ~ 35611814 (+)
XLOC_004886 NA coding downstream 78806 35921177 ~ 35925412 (+)
XLOC_004887 NA coding downstream 139545 35981916 ~ 35984381 (+)
XLOC_004888 NA coding downstream 202942 36045313 ~ 36049933 (+)
XLOC_004889 btbd17a coding downstream 249847 36092218 ~ 36107156 (+)
XLOC_004890 map2k6 coding downstream 266700 36109071 ~ 36161256 (+)
XLOC_004879 NA non-coding upstream 489877 35345825 ~ 35348411 (+)
XLOC_004876 CU459210.1 non-coding upstream 730290 35106575 ~ 35107998 (+)
XLOC_004874 NA non-coding upstream 778680 35058147 ~ 35059608 (+)
XLOC_004891 NA non-coding downstream 432251 36274622 ~ 36277231 (+)
XLOC_004892 NA non-coding downstream 512904 36355275 ~ 36376878 (+)

Expression


Co-expression Network