LOC120544081


Basic Information

Item Value
gene id LOC120544081
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 17110867 ~ 17121814 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777622.1
TCGAGGGCTGAAAGAGTGTGTTTATACATGTAGGCCTATGGGAAAGAGACAGCAAGGCAgagtgtccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaaccacAAAATCTAATTTTCATAACGCAGTAGAAGGGGAAGAGAGACCAAAGCTGCTGACTAACACATTATAATGATACTTTGTGTTGTGGATTTAAAGGCGTTTGGATTATCAAACTACTGGATTGTAAAGCACAGGACAGACCCTGGAGATCATGGTACAAGTGAGTACCATCCAGCCTGTCTCAGTACTGGCTAACCAATCGCAGTACAACAACTCCTCCCTGGGCTCTGAAGGGCCAGGGTACAGTGATGTGGAGTTTGTGCTGCTGGGTGTTACAATGGCTATTCTGGTTCTGGCCATAGTTTTTGGTAACGTGATGGTGATTACAGCCATCCTGCGCTTCCAGAGGCTCCAGACAGTCACCAACTTTTTCATTGCCTCGCTGGCTGTGGCTGACCTTATCATGGGTTTGGTTGTGGTCCCCTTTGGCTCCAGCCACATCCTGCTGGGATACTGGCAGTTTGGAAACTTCATGTGTGAATTCTGGACAGCAACTGACGTGCTGTGTGTGACGGCCAGCATCGAAACCCTGTGTGTGATTGCTCTGGACCGCTACCTCGCCATCACCTCGCCGCTCCGCTACCCTACGCTACTCACCAGGGGCCGGGCCTTTGCAGTGGTCCTCGGGGTTTGGGCAGTGGCCTCCCTCATCTCCTTCCTGCCCATTCATCTGAAGTTGTGGGTGTCTGATAAAGAGGAAGCTCGCAACTGCTTGGAGGATGAGTCCTGTTGTGATTTCAACACCAATATGGCATACGCTGTGTCTTCCTCAATTGTGTCCTTCTACCTGCCGCTGTTGGTGATGATTTTCCTGTACACCCGGGTCTTCCAGGAGGCTCAGAAACAGCTGGAGAAGatcagagggagggagaggcacTTCTATAACTTGCATTACACTGCACAGCTGACTCCTGATAATAGTCCAGCAATGAGTAAACTCAGGGCAGGAACTGAGGTCGGAGAACAAGCAGGAGAGGACAGACTAAACATGCAGAAAACAGGAGGTATAGACACTGGTAAGGAGGAAAAGTTTGGAGAGAGTAGAGCAAGGAcagagaaagcggaaggaaaacACTCCGCAGCAAAGCGTCTTAAGTTCTGTCTGAAGGAGCACAAGGCTGTAAAAACTCTGGGGATCATCATGGGAACCTTCACGTTGTGTTGGCTACCTTTCTTCATCCTCAACATCCTCATGACCTTCCTCAACTTGGGTGATATTAAGCTGCTCTTCAAACTCCTCAACTGGCTAGGATACTCCAACTCTGCCTTCAACCCGCTTATCTACTGCCGCAGCCCCGACTTCAGGCACTCCTTTCAGGAGATTCTCTGTTTGAAGGGCAAATGggggaggcagagagggaggagaggatggGGATGGTGCAGGGACAGAGATTGTACCTCCAGGCCTCCAGTTAGGACGAATGGGAACTCAGACCTGAATGGTGTCACGGGGGTGGATGTTCAGCAGAGCTCAGGGGGGAAGGGCAGTTTGGAGAGCTCTATTCAGGATTGCTCACTAACTCTGGCTCCTCTGAATTCTTGCTGTGAGCAGGTTATAGATATAGCTCCTGGTTCCCTGACAAACTGGCAGGATAACAGTTCTGCTAATGGGAGTTGTAAGGAAAGTCTGGCTTCTATTGCTTGACCAATTAGGATATGACTTTACATTGTGTGTGCATTGTCGTGTTCTTAACATCAATTTGATGTAGCTCAAAATGTTTGTCTTGGGTTGAGAATGACTCAACTTTATGGTCTTTTTTAGCTTGTAGTGTTCTTTAATATTCTGTGTATTTCAGTTAATGTTACTGAGGTTTTACTTGTGGTCACTGTTCTTCTTTGCTGCTGCagttttcctaaaacagctaCACAAGTAAACCATTTTCAGCAGTATGTGTCAGCATTAAAAAAGATCTGACTTAAACCTT

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777622.1 True 2026 mRNA 0.48 4 17110867 17121814

Neighbor

gene id symbol gene type direction distance location
LOC120544325 LOC104933051,LOC104966984,LOC100710405 coding upstream 131157 16963959 ~ 16979710 (+)
LOC120544388 NA coding upstream 217411 16890450 ~ 16893456 (+)
trnas-gcu_7 NA coding upstream 231545 16879241 ~ 16879322 (+)
LOC120544386 LOC105417437,LOC106917148 coding upstream 246834 16858015 ~ 16864033 (+)
rab38c LOC104935089,LOC104966993,LOC103375967,LOC100708531 coding upstream 305531 16800599 ~ 16805336 (+)
il12bb NA coding downstream 41901 17163715 ~ 17167448 (+)
LOC120543786 rnf145 coding downstream 54627 17176441 ~ 17196281 (+)
LOC120543932 NA coding downstream 342593 17464407 ~ 17467578 (+)
asl asl coding downstream 368198 17490012 ~ 17498266 (+)
LOC120544634 NA coding downstream 403832 17525646 ~ 17527150 (+)
G165865 LOC103376153,LOC104933044,LOC106917154,LOC105916235,LOC103138852 non-coding upstream 155587 16948670 ~ 16955280 (+)
G165849 NA non-coding upstream 189625 16917859 ~ 16921242 (+)
LOC120544389 NA non-coding upstream 220531 16885988 ~ 16890336 (+)
G165764 dpp3 non-coding upstream 245207 16864145 ~ 16865660 (+)
G165729 NA non-coding upstream 391600 16700673 ~ 16719267 (+)
G165905 NA non-coding downstream 40119 17161933 ~ 17162448 (+)
G165995 NA non-coding downstream 278795 17400609 ~ 17409951 (+)
G166000 NA non-coding downstream 308427 17430241 ~ 17430648 (+)
G166024 NA non-coding downstream 385025 17506839 ~ 17507735 (+)
G166028 LOC104958813,LOC105939289,LOC101064037,LOC102197733 non-coding downstream 389363 17511177 ~ 17514560 (+)
fgf13b LOC104966980,LOC101465170,LOC103376159,LOC100710934,LOC108238960,LOC103138886,LOC103475676,LOC107084161,LOC106524025 other upstream 90451 16995758 ~ 17020416 (+)
LOC120544384 LOC100708800,LOC102793722,LOC102204659,LOC102301331,LOC103375969,LOC101471849,LOC101156840 other upstream 273696 16809886 ~ 16837171 (+)
LOC120544324 NA other upstream 356578 16736664 ~ 16754289 (+)
G165702 NA other upstream 484521 16585142 ~ 16626346 (+)
G165556 yipf5,LOC102777143 other upstream 1152732 15956480 ~ 15958135 (+)
ubtd2 ubtd2,LOC102788971,LOC100712015 other downstream 23662 17145476 ~ 17160145 (+)
LOC120544493 LOC103370065,LOC101073234,LOC102787924,LOC100696184 other downstream 76883 17198697 ~ 17285342 (+)
LOC120544326 bod1,LOC103369971,LOC101484775,LOC100697254,LOC102215513,LOC102291330,LOC102786418,LOC105939389 other downstream 220966 17342780 ~ 17362284 (+)
G165984 tcerg1,LOC102783943 other downstream 227752 17349566 ~ 17490688 (+)
LOC120575677 LOC103362304,LOC102306182,LOC100703890 other downstream 548301 17670115 ~ 17685280 (+)

Expression


Co-expression Network