pfdn1 (pfdn1)


Basic Information

Item Value
gene id pfdn1
gene name pfdn1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 560344 ~ 568709 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777778.1
GAACAACGgcctcgcacatgcgcagtgtgtgtgtttctgcttcAGTGGTGGTGAACATGGCAGCGCCTATAGACCTGGAGCTGAAGAAGgcgTTCTCTGAGCTGCAGGTGAAGATGATCGACACGCAGCAGAAGGTGAAGCTGGCCGACCTGCAGATCGATCAGCTGACCCGCGTTCAGAAACATGCTAAGCTAACGCACGCGGAGGTCGCCGTGCTGGCGGACAACACGCGGCTCTACGAGGGAGTCGGACGCATgttcATTCTTCAGTCAAAGGAAGACATCAACAGTCAGCTGATGGACAAACAGAAAACAGCTGAGGAGAAAATCAAAGAGCTCGAgCAGAAGAAGGTGTACCTTGAACGCAGCGTGAAAGAAGCTGAAGATAACATCCGAGAGATGCTGCTGTCCCGGAGATCTCACTGATCAATAACCAATCAGTGATCAGGAACCAATCACTGATCAGGAACCAATCACTGATCAGGAACCATCAAACAGAATGTGAGGATGTTCTCCAGGGTGGAGATGTATTGACTTGTATTTGGTTTAGTTAGTTTCTGCAGAATGATCAGTAATAACATGTGTAATAACGTGTAATAACATGTGTAATAACGTGTAATAACATGTGTAATAACGTGTAATAACATGTGTAATAACGTGTAATAACATGTGTAATAACACGTTGATGTCTCTGTTTGCTAGTTGTTCATATTAAACTGTTGAACCTTCA
>XM_039777779.1
GAACAACGgcctcgcacatgcgcagtgtgtgtgtttctgcttcAGTGGTGGTGAACATGGCAGCGCCTATAGACCTGGAGCTGAAGAAGgcgTTCTCTGAGCTGCAGGTGAAGATGATCGACACGCAGCAGAAGGTGAAGCTGGCCGACCTGCAGATCGATCAGCTGACCCGCGTTCAGAAACATGCTAAGCTAACGCACGCGGAGGTCGCCGTGCTGGCGGACAACACGCGGCTCTACGAGGGAGTCGGACGCATgttcATTCTTCAGTCAAAGGAAGACATCAACAGTCAGCTGATGGACAAACAGAAAACAGCTGAGGAGAAAATCAAAGAGCTCGAgAAGAAGGTGTACCTTGAACGCAGCGTGAAAGAAGCTGAAGATAACATCCGAGAGATGCTGCTGTCCCGGAGATCTCACTGATCAATAACCAATCAGTGATCAGGAACCAATCACTGATCAGGAACCAATCACTGATCAGGAACCATCAAACAGAATGTGAGGATGTTCTCCAGGGTGGAGATGTATTGACTTGTATTTGGTTTAGTTAGTTTCTGCAGAATGATCAGTAATAACATGTGTAATAACGTGTAATAACATGTGTAATAACGTGTAATAACATGTGTAATAACGTGTAATAACATGTGTAATAACGTGTAATAACATGTGTAATAACACGTTGATGTCTCTGTTTGCTAGTTGTTCATATTAAACTGTTGAACCTTCA

Function

symbol description
pfdn1 Predicted to enable protein folding chaperone and unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be part of prefoldin complex. Predicted to be active in cytoplasm. Orthologous to human PFDN1 (prefoldin subunit 1).

NR:

description
prefoldin subunit 1

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09548 PFDN1; prefoldin subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777778.1 True 729 mRNA 0.46 4 560344 568709
XM_039777779.1 False 726 mRNA 0.46 4 560344 568709

Neighbor

gene id symbol gene type direction distance location
oatx LOC103373994,LOC104932490 coding downstream 23392 508137 ~ 536952 (-)
slc23a1 NA coding downstream 97876 437951 ~ 462468 (-)
mat2b mat2b coding downstream 132578 392067 ~ 427766 (-)
LOC120544159 NA coding downstream 194095 362006 ~ 366249 (-)
LOC120544162 NA coding downstream 240729 312392 ~ 319615 (-)
tmprss15 NA coding upstream 22325 591034 ~ 632939 (-)
LOC120544220 NA coding upstream 67945 636654 ~ 663746 (-)
LOC120544137 NA coding upstream 125556 694265 ~ 727005 (-)
LOC120544167 NA coding upstream 209859 778568 ~ 783234 (-)
LOC120544156 NA coding upstream 237442 806151 ~ 815589 (-)
G162269 NA non-coding downstream 24863 534193 ~ 535481 (-)
G162265 NA non-coding downstream 79577 480473 ~ 480767 (-)
G162258 NA non-coding downstream 97460 462678 ~ 462884 (-)
G162252 NA non-coding downstream 162165 397823 ~ 398179 (-)
LOC120544187 NA non-coding downstream 181658 371982 ~ 378686 (-)
G162262 NA non-coding upstream 23059 591768 ~ 600857 (-)
G162293 NA non-coding upstream 107956 676665 ~ 683561 (-)
G162295 NA non-coding upstream 138750 707459 ~ 708067 (-)
G162278 NA non-coding upstream 187012 755721 ~ 826383 (-)
G162306 NA non-coding upstream 196054 764763 ~ 765382 (-)
LOC120544218 LOC103373995,LOC103459907,LOC105918498 other downstream 1422 543704 ~ 558922 (-)
pwwp2a pwwp2a,slc23a1,LOC102781148,LOC103395589 other downstream 58240 471092 ~ 502104 (-)
LOC120544212 LOC101481373,LOC102305685,LOC102212117 other downstream 403529 101803 ~ 156815 (-)
ndufa2 ndufa2 other downstream 459637 94635 ~ 100707 (-)
G162166 NA other downstream 536907 21716 ~ 23437 (-)
ttc1 ttc1 other upstream 1526 570235 ~ 578849 (-)
G162311 rps14,RPS14,LOC100194652 other upstream 218062 786771 ~ 794731 (-)
LOC120544221 NA other upstream 260386 829095 ~ 844858 (-)
chm chm,LOC104936337,LOC106675663,LOC101479632,LOC108251494 other upstream 291223 859932 ~ 890410 (-)
G162352 NA other upstream 548364 1117073 ~ 1118688 (-)

Expression


Co-expression Network