LOC120544220


Basic Information

Item Value
gene id LOC120544220
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 636654 ~ 663746 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777844.1
atggttaaacctcattggctcttacctgTGTATCTCCATGCTCTATCATGGAaccttccgttgatccagactactgtTGAACTGATTTACTGTTGGTTTGTTTCAGATTCTCCCGGTCCTCCATCGATCCGTCTGAACTCTAACCTTCTGACCAACCAATCCAAGGTGGTTCTGACCGCTGACTCCGCCTTCTCCCTCAGCTGCCATGGTAACCTTTCGCTGCATTGGACCACCACGGCGTTCCGTCTGCAATTCCTGGACCCACTGCCGAACCCGGTGGAGGTAACGAGCTCGAACCCCAGACACACCGGGACATACCGCTGTGGGTACACCAACCAGAGCCTGCAGCACCTGCACACCTGGGTACACCTGTATGTCAAAGACACGGCGCAACCCTCCAGTGTTTTCGTCGTCCCAAACAACCTGCCAGACATGAGGGAGGGCCGGGATTTCCTGTTCAGGTGTATGCTGACAGACCCGTCCGTCAACAACCTCACCCTCCAATCATCGGACAGCAGAGGGGGCAAGGTGCAGGACCTTCCCTCGAGCATGGACGTGACCTTTGACCCGCAGAAAGGAGCGCTGATCCGAGACGTGCAGATGTTATTTACAGGACACTACGTCTGTTCAGGCTGGAGGGATGGAAAGCAGTTCAGATCCACAGCTGTACACCTGTTTGTGATCCCCAggctTCGACATCCCCCTtttctgtctgtcagtgtggatgAATCGGTCCGTCTGAAAGGAGAGCAGTATGACATCACCTGTATAACCAGTAACCCCAACCACTTCTACAACATCACCTGGACACACCCGAAAaaaaagATGCTGAATGTCTCAGTCAGCCATCTCTATAGCAACAAGCGGCTGTACATCAACAGCACGGTGGCGGTGGCGGCCGTCGGCCGGGAACACAGCGGAGACTACACCTGTACGGCCGTCAACGAAGCCGGAGTCGCCACGGCAACCACGCGGCTCACAGTTGTGGATGCTCCGTACCTGAGGATCTATCTGCAGCGAGCTAACGCTAACGTTAATGCTAACACCAAGCCCACAGAGATCAATGAGGACCCtatggctaatgttagcaggaTGCTAATGGAGGAGCAAGCAGAGCCAGAAGCTAATATTAGCAGCAATTTGCTGGCAGTGAACGGGGAGCGAGCCACTAACGTTAGCAGCAATGGAACGGACGTTAACGGcggcgctaacgttagcggcaGCAGCCTAGTGGAGGTGTACGAAGGTAAAGATGTGATGCTGACCTTTGTGATGGAGGCGTATCCTCCAATCAGGAGCCAGCACTGgaccacaacaacacacaacaacaacgacACGGTGTACCAGGAGAGCTACGCTGCTAACGGCTACAGGTCGGAGGCCAGTTTGCTGCTGCACCGTGTGCGCCAGGAGGATCGAGGTCGATACTCATTCCACTTTAGTAACTCTTTCTTTAACGGATCGCAGAACATCAACCTCCGAGTTTACCGTTCTCCGAGCGTTGACATCAGTCAGGAAAACAACactctgacctgcagcagcTCTGGATACCCATTACCCACAATCTTCTGGTACACCTGCCCCGGTGTCCAGGACACGTGTGGAGACCTCTCCACCTATCAGGTGTCTCCGGCTGATGTCACATCTCAGCTGGAGGCGGAGCAGGAAGTGAAGAAACAGCTGATGCTCCCTCCATCACCTGATGATGTCACTGCGGAGTGTGTCGCTGACAATCAAGTGGGAGCGTCTCGCCGCGTATTTAATCTCCgttCTGCAGGAACTCCGGGAACGTCGTTAACTCTGGCTCTGATTGGAGCTCTGATTGCTGTGGCCATCCTCTTCCTGCTCATATTGTTCGTCAACTGGATAATGAAACCCCGGTACGAGATCCGCTGGAAGATCATCGAGAGCACCGAGGGAAACAACTACACGTTCGTGGACCCGACCCAGCTTCCTTACAACCAGCGCTGGGAGTTTCCTCGAGACAAACTCCGCCTCGGCGCTGTTTTGGGCTCGGGGGCGTTTGGGAAGGTGGTGGAGGCGACCGCATACGGTCTGGGATCAGACAACGCCACCCGCGTCGCCGTCAAGATGCTCAAACCGAGCGCTCACTCAGAGGAACGGGAAGCTCTGATGTCCGAGCTGAAGATCCTCGGATATcttggttaccatgacaacatcGTCAACCTGCTGGGCGCCTGCACTCGAGGAGGCCCCATGTTGATGATCACAGAGTATTGTAGTCATGGCGACCTGCTCAACTTCCTGCGGGCTCGCGCTCAGGACTTCATGGCGTCCATGTTGAGCGTGGACGAAGTGAAGGGCGAGGTTTTCTATAAGAACAGCCGGCTCCGGAGTGACAGCGGGATCTCGTGCTGCTCAGAGTATCAGGAGATGCTGCCGGCTCTGAGTCCGGGACAAACCCACCTGGgtgtGCATGACCTCATGAGGTTCTCCTACCAAGTGGCACAGGGTCTGGACTTCCTGTCCACCAGGAAttgtATCCACAGAGATGTAGCAGCCAGAAACGTCCTGCTGACTGATCGTTGTGTTGCAAAGATCTGTGACTTCGGTTTGGCACGAGACATTCGCAACGACGACAGCTACATCGTGCAGGGAAACGCTCGTCTGCCAGTGAAGTGGATGGCTCCAGAGAGCATCTTCCAGTGTGTTTACACCGTCCAGAGTGACGTCTGGTCCTACGGAGTCCTGCTGTGGGAGACCTTCTCTCTGGGTAAGAGTCCGTACCCAAATGTTGCCGTGGATACCAACTTCTACAAGATGATCCAAGATGGCCGCCATATGGATCAGCCGGACTTCGCTCCAGCAGAGATGTATAAGTTGATGAAGCTCTGCTGGAGTCTGGAGCCCACTGACAGACCGACCTTTAAGATGATTGGTCAGCTCATCAGCAGGCTCCTCCCCTCCGCCGGTGACTCATCGCCACATCACAGCCCCCAGTCGCCGTACAAGAACGTGGCTGAgttcagagaagaagaagaggaggaggaggtcagAGGCGCTctgaagagagaagaagaagaagATCGCCATGACGACAGCGACgacaaagaggaggaggagccgaTGATGAAGAACATCTACCAGCTGTCCTGATCGTCTCATCCAATCAGAACCTGTCCCTCTGACTCCTGCTGTCTCCAATAAAGATGTTCAAAATGAAACTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777844.1 True 3190 mRNA 0.54 22 636654 663746

Neighbor

gene id symbol gene type direction distance location
tmprss15 NA coding downstream 3715 591034 ~ 632939 (-)
pfdn1 pfdn1 coding downstream 67945 560344 ~ 568709 (-)
oatx LOC103373994,LOC104932490 coding downstream 99702 508137 ~ 536952 (-)
slc23a1 NA coding downstream 174186 437951 ~ 462468 (-)
mat2b mat2b coding downstream 208888 392067 ~ 427766 (-)
LOC120544137 NA coding upstream 30519 694265 ~ 727005 (-)
LOC120544167 NA coding upstream 114822 778568 ~ 783234 (-)
LOC120544156 NA coding upstream 142405 806151 ~ 815589 (-)
LOC120544177 NA coding upstream 319648 983394 ~ 983728 (-)
LOC120544169 NA coding upstream 459633 1123379 ~ 1126081 (-)
G162262 NA non-coding downstream 35797 591768 ~ 600857 (-)
G162261 NA non-coding downstream 44595 552398 ~ 592059 (-)
G162269 NA non-coding downstream 101173 534193 ~ 535481 (-)
G162265 NA non-coding downstream 155887 480473 ~ 480767 (-)
G162258 NA non-coding downstream 173770 462678 ~ 462884 (-)
G162293 NA non-coding upstream 12919 676665 ~ 683561 (-)
G162295 NA non-coding upstream 43713 707459 ~ 708067 (-)
G162278 NA non-coding upstream 91975 755721 ~ 826383 (-)
G162306 NA non-coding upstream 101017 764763 ~ 765382 (-)
G162307 NA non-coding upstream 107748 771494 ~ 776493 (-)
ttc1 ttc1 other downstream 57805 570235 ~ 578849 (-)
LOC120544218 LOC103373995,LOC103459907,LOC105918498 other downstream 77732 543704 ~ 558922 (-)
pwwp2a pwwp2a,slc23a1,LOC102781148,LOC103395589 other downstream 134550 471092 ~ 502104 (-)
LOC120544212 LOC101481373,LOC102305685,LOC102212117 other downstream 479839 101803 ~ 156815 (-)
ndufa2 ndufa2 other downstream 535947 94635 ~ 100707 (-)
G162311 rps14,RPS14,LOC100194652 other upstream 123025 786771 ~ 794731 (-)
LOC120544221 NA other upstream 165349 829095 ~ 844858 (-)
chm chm,LOC104936337,LOC106675663,LOC101479632,LOC108251494 other upstream 196186 859932 ~ 890410 (-)
G162352 NA other upstream 453327 1117073 ~ 1118688 (-)
G162358 NA other upstream 529056 1192802 ~ 1310616 (-)

Expression


Co-expression Network