htr3a (htr3a,LOC106514605,LOC108238041,LOC103395383)


Basic Information

Item Value
gene id htr3a
gene name htr3a,LOC106514605,LOC108238041,LOC103395383
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 9058360 ~ 9070105 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777957.1
ATGGATATGGAGGATATGGGTGTCAGGCATCCCGAGGCCTTTCATCAGAGCAGCCGGCAGTCTACCACAGCAGGAGAAGAAAACACAGTGCACATAAAACGATTCATATTGTATACATTTTCAGTGAAGAAACTGGGCAGCAGCACAGGAAGATTTGCCAACGCCACGTTAGTGCGGCTATCTGAGTTTTTGAGTGCGGGATATAAGAAGGGAGTGAGACCAGTGAAAGACTGGAGGACGTCCACTATAGTGGCCATAGACCTCATGGTTTACTCCATCCTCAATGTGGATGAGAAGAACCAGGTTTTGACAACATATGTGTGGTACAGACagTCATGGACGGATGAGTTCCTGGTGTGGAACCCAGAAGACTTTGATGAAGTCAAACAAGTTTCTTTACCTACCAATAACGTGTGGGTGCCCGACATCCTCATCAATGAGTTTGTAGATGTGGGGAAGTCTCCAGACATACCTTATGTCTACGTGACACATGATGGACTGGTGCGAAACTACAAACCTATCCAGGTGGTCACAGCCTGCACTCTCAACATCTACAACTTCCCATTTGATGTCCAGAAATGCAGCCTTACCTTCCAGAGCTGGCTACATACCATTGATGACATCAACATCACCCTGATGCGAAGCCCTGAGGAGCTCAGGGAGGACAAGAGTGTCTTCATGAACCAAGGAGAGTGGGAGCTGCTTCATATACTGTCCAACTACAAGATCTTCAGTGTGGACAATGATGACTATTATGCTGAGATGAAGTTCCATGTGGTGATCCGACGGCGGCCGTTGTTCTACACTGTGAACCTGCTGCTGCCCAGTATCTTCTTGATGGTGATGGACATTGTGGGTTTCTATCTGCCACCAGACAGTGGAGAGAGGGTTTCCTTCAAGATCACGTTGCTGCTGGGCTACTCTGTCTTCCTCATCATTGTATCTGACACTCTGCCTGCCACCGCCATAGGAACCCCGCTGATAGGTGTGTACTTTGTGGTTTGCATGGCCCTGCTGGTGATCAGCCTGACAGAAACCGTGCTGATCGTGCGTCTGGTCCACAAGCAGGACCTGCAGCCCCCTGTGCCCCACTGGGTGAAGTACTTGGTGCTGGAAAGAGCTCCAGTCCTCTTCTGCATCCACAAGAAGCACCGCCTCTGCTCCACACTGTCCTCCCAGGGCGCCGACCTGGAGCACTACAAAGACAACAGCTATGGGACCGCCCAGTGCACCCTGCACCACACCTGTGAGATAGGCCGAAGGCTCAGCCACCATGACAGAGAAGGCGGGCTGCTCGGACTAGGCCTGCCCCCCTCCAGGGACCACGCCTCGCCTGTCATGGACAACATCCTGCAGGAAGTGACAGCGATACGCCACTTCCTGGAGAAGAGGGACAGGTGCCGGGAAGTTGCCAAGGAGTGGCTGCAGGTCGGCTACGTGCTGGACGTGCTGCTCTTCAGAGTTTACTTGGTGGCTGTGGTCGCCTACAGCATCACACTGGGCACGCTGTGGTCAGTGTGGCAGGTCGCCTGAGTCTCACCGCTGTACTGCTGTGGACACAAACTCAGTGGGTGGAGCGTTGAATTCAGAAGGCCAGAGTTATTGGCTTTATGCCCTGTGTTGCTCAGAGGATACAGGGAGGCACTCGCATAGTAATGGAACAAGGAAAGGCTTGTAGCTGGGGCCTATGTACAAAGGTTAATTAACCAACTAGGTTTGCCACTATATCCCtacacattttattattataattaccaTCATTTTAGGTGTGTTTAGAGAGTGTTGAAGTCCCATGATGCGATTGCAATCTAAGAAGTTTTCAGGGCCAGCCCAAGGCTTTTTGAGATGCGCAGGCAGGAATGCCCCTAGACACTTATAAATGCAATTTTTAGTCGTCACTATGAAGGCTTAAAAGGATAGCAGTAGTGGTAACACAACAGACATAGATACTTTAGTTAAGGGAACCACTTCAATGATGTCAGCCCATCTCCCCCAGatgaatttacaataaaatCAACCAACATCAACCAATACATTAACCTGGTAAAACGTAACTATCtgtataatgtatttttgtttatataaagtgaaaatatacatttatttacttaaactgtatgaaaaaaaggaaaactggGCCACACAAGCATCACTTGTTTCAGGCATTTTGTTGGCCGAGGAGCCCTGAAAAACAATTACAGTAGTTTTGGTCTGGTTGTGTTTAGAAGAATAAAAGGTTTTGGGATCAAATTAgccaatttaaaacaaatattgaCGATGGCCACAATAATTACTGtcttttaaaggctacattggTTAAAACCTGAGAAGAAAAACCAGACAATTTGTTGTGATAAAGGTCAAAACTTGAGAGATCAGCATTAACGATACAGTTTAAGAATAAAATTTGGACTTAGAGACAAGTTGGTGAGCAGCAGGGTATTTGTACATTATCAAGTTTTTGTTGCAGTGTAAAACAtctgtataaatatataaaatatggataaataaataaggaattTACATAAGTAAGGCAATAAATGCATATTACGACCTGTTTTGTGCTACATGTATATTAAGAAAAACATTTGACTGCATGTCCCCTTTCCTTGAATGTCAAATGTATTACATGAAGATAGATAGAAATACATATTCACACAGATTGTTGAGGCAtattattagtttatttttatttattgtaattgtaaatcaAAAGTCTGTGAGTAAAATGATGTCAACTTGTAGCGCTTCAAATCAATATcatgtttaacattaatgtgcCATCTCATGTAATAAAAATAGTCTAAAAACTATATTGTTGAATAGGATTTGGATAACGTTTCTGTAAATACAGATGTGTGCTGTGGTTTTATtcagttgtgttgctgtgtcaAGAGACGTAACTATACACATTGAAGGAGAAGGAACGGAATTGTATT

Function

symbol description
htr3a Predicted to enable serotonin-gated cation-selective channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in irritable bowel syndrome. Orthologous to human HTR3A (5-hydroxytryptamine receptor 3A).

NR:

description
5-hydroxytryptamine receptor 3A-like

GO: NA

KEGG:

id description
K04819 HTR3; 5-hydroxytryptamine receptor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777957.1 True 2939 mRNA 0.44 9 9058360 9070105

Neighbor

gene id symbol gene type direction distance location
htr3b htr3b coding upstream 4225 9045265 ~ 9054135 (+)
lrwd1 LOC107098205,LOC104945841 coding upstream 95443 8948415 ~ 8962917 (+)
mcama NA coding upstream 146712 8857113 ~ 8911648 (+)
tmem120a LOC104921110,LOC103360253 coding upstream 233848 8815703 ~ 8824512 (+)
styxl1 styxl1 coding upstream 244067 8804792 ~ 8814293 (+)
cadm1a cadm1,LOC108238063,LOC107387207 coding downstream 591817 9661922 ~ 10076292 (+)
LOC120544618 sc5d,LOC102788886 coding downstream 1029766 10099871 ~ 10107367 (+)
tecta tbcel,tecta coding downstream 1040340 10110445 ~ 10178772 (+)
LOC120544214 LOC103354814 coding downstream 1118431 10188536 ~ 10198514 (+)
tlcd3a LOC103354813,LOC104919172,LOC100712488,LOC101468971,LOC101174853 coding downstream 1150114 10220219 ~ 10254332 (+)
LOC120544514 NA non-coding upstream 113758 8939813 ~ 8944602 (+)
G164208 NA non-coding upstream 254170 8803884 ~ 8804190 (+)
G164163 NA non-coding upstream 359387 8698232 ~ 8698973 (+)
G164162 NA non-coding upstream 361482 8696445 ~ 8696878 (+)
G164136 NA non-coding upstream 421315 8636831 ~ 8637045 (+)
G164309 NA non-coding downstream 10384 9080489 ~ 9178209 (+)
G164334 zbtb16 non-coding downstream 162585 9232690 ~ 9233949 (+)
G164335 NA non-coding downstream 166375 9236480 ~ 9236971 (+)
G164336 NA non-coding downstream 198773 9268878 ~ 9275413 (+)
G164339 NA non-coding downstream 235601 9305706 ~ 9318968 (+)
bckdk bckdk,LOC102785460 other upstream 70768 8965360 ~ 8987592 (+)
G164156 NA other upstream 376306 8680133 ~ 8682054 (+)
LOC120544397 LOC101484903,LOC104947545,LOC103360243 other upstream 427499 8628410 ~ 8630861 (+)
kcnj6 kcnj9,kcnj6 other upstream 695917 8353458 ~ 8362443 (+)
LOC120575583 LOC101066275 other upstream 763080 8292709 ~ 8295280 (+)
G164466 NA other downstream 1138066 10208171 ~ 10208658 (+)
G164531 NA other downstream 1490538 10560643 ~ 10562266 (+)
LOC120544459 cul5 other downstream 1502260 10572365 ~ 10589296 (+)
LOC120543733 myo7a,LOC101463922,LOC102291063 other downstream 1579892 10649997 ~ 10696751 (+)
rabep1 rabep1 other downstream 1782180 10852285 ~ 10886327 (+)

Expression


Co-expression Network