LOC120544388


Basic Information

Item Value
gene id LOC120544388
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 16890450 ~ 16893456 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778088.1
TGGAGATGTAATGCTCTACATACACAGATGTACTTGCTTGAGGGGTTATCCAGATGGAACCATAATAGGTCTCAGCAAGCTCTGGGTATGAGTGGTACATCACGTACAAAGATGTACGTTTGATGTCCAGTGTGAACGTCCTGAGCAACGGAGTCCTAGGAAGTGGACTTCTTCCAGAGTTTATACCCCCAGGGAAACCTACCGGAGAATGTATTGCTGTGGAATATTTGCTAGCGCAGTCTAACCGGGGAGATCTGCTGAGTGCACAGAAGGAAATTGGTGCCATTCCACCAGAGATGCTGGATGAAGCTCAGGAGGATGAATGTCCTGATGTGACAGTACCCCAGGCCACTGATATATCTTTTCAGTCTTCATCTCAGGAATCTACACTTGAAAgtggtgtgttcagcagtcctGCCAGCTCCCCGTTTGAGGACAGTGGGCCCATCACTTCAACTCTGGATAGTCGGTGTGATCCTAGAGGAATTCCCGGATGGGAGGCAGTCGATGCCTTGGCTGGGTATCTTGTCAGCCTCAATCGGACAATAACCGCTCTCTCAAACTCTGAGATAGTAGAGATATTGAGACTGTACTCCAGCCTGGATCCCATTGATAAGTCCCCAACCAAATACTCCatgaaaagtaagaaaaagacCTTGTCAGGACCATGGAGAGCTTCTTGGAAGCGCAGTGGCTCTGCCCCAGGCCAGCAAGcagcgtgtgtgcgtgtgtgtgtgttttatctaTTTGCAGATTGTTCATGGCCAGGCTGCCCAAAGACCTGATCTTAACAGGATTTCTGAGTGTTGCACTCAGACTCTACAAAGAGTTCCGGGAAGCCAGAAATAGGCCAAAGGACAACAAAGGGCTGCAGGATCGGCAGAAGAGAACCGACCACGATTCGTTACTGCAAGGGGTGCAGCTTCCTCAGCAGGTCAATTTGGCAGAGGAATCGCTCCTGGAGGCCCGGGACCTACCATCCGAGCCTGTTCAACGCGCTAATACAGTTATGGAGTTCCAGGAACCAGAAAACCGTGAGGGTGAGGCAGTGATTCGTAAACGTCGCTGTGCCAGAGCGGTGTTTCCCACTGTGCACACAGACACTGGAGCTGGTGCCAGCTCAACCAATGCAGATCAGGACTGGCCGAGAGCACAGCACTGGCCTGGGGATGCTGTCTTCCCTGCTTTGACGGATGTTGCCTACTGCCAGCAGGGTCAACACTCAGCTCCAGCATCTCCCTCTCAGGGCTGGTCCCCTTACCAGCCGTCACCTGCTCCAGCGTCTCACTCTCAGGGCTGGTCCCCTTACCAGCCGTCACCTGCTCCAGCGTCTCACTCTCAGGGCTGGTCCCCTTACCAGCCGTCACAGTCACCTGCTCCAGCAACTCACTCTCAGGGCTGGAACACTTACCAGTTGCCACCAGTGCCAGCTTCTCACTCCCATGGTGGCCATCATGATCAACCGCCACCAGCTCCAACACCTCAACCTCAAGGCGGGCTTCCTTACCAGCCAGTCCCCGCACCACTAGCTTCTCTCAATCTGTTCCGAGAATGGAGATTGCGAAAGGCAACCCTGGAGGATAAGGAGCGAGAGATAAGAGGTGATCCCCCCAAGAAGCGGCAAACTAAAGAAAGCTACCACTAtcagtgtaaaatatgtggTCAGTCAAAGAGCAAACTTACTGGCCATACACAGTTATGGGGGAAATGGTACTGTCCTGCATCTGGACAGACCATCACAGAGTGGAAGAGCTCATTATAGAAtacatatgtactgtatatagttgttttttatagtttttataaTTGTGCTGCACTTTGCTGTTCCATAACAAGCccatacattgtttttttttttaaaagaacacACAAAACTCCCATAAACCGTTAACTGTGTTAACGTAAACATAGATAAACATAACAAGATAACACAAACACTTTGAATAgaaataacaaacacacacaaatctcttTATTGGAGATGTTtgtgttctttaaaaaaaacacacacatacacctttggtgtttgtgttcttaaaaccaaacaaacacaactcTTGTGGTGTAACACATCCATCCTTTGGGTGGAAGATCCAGGTGCAAATCCTGGCAGGAGTGTGCACAATGTTGGCCTAATCAGTATTtaattaaaattgaatttaaaatatattttattattatcatcacaaAGAAGCATGATTGTTATTCTTACCAATTGCCCCAGCTTCAATCCTATTTGTATCTGTTTGGAAGTTATATTTGATGAATTCATAGCACTTTATAAAAGTGTTCGTTAATTGAGAAATGTTTCA
>XM_039778089.1
ATTTGCAATACCTCAGTCAATTGTCATGACTTGCAGTCATATCAAACAGTTAATAGAGGACTGCAAAGACATACTGGACAACACCAACGTTTTACTTGTGACTATAAACAACACCACAGTGTCCTCCTGGCTGCAGGATCGGCAGAAGAGAACCGACCACGATTCGTTACTGCAAGGGGTGCAGCTTCCTCAGCAGGTCAATTTGGCAGAGGAATCGCTCCTGGAGGCCCGGGACCTACCATCCGAGCCTGTTCAACGCGCTAATACAGTTATGGAGTTCCAGGAACCAGAAAACCGTGAGGGTGAGGCAGTGATTCGTAAACGTCGCTGTGCCAGAGCGGTGTTTCCCACTGTGCACACAGACACTGGAGCTGGTGCCAGCTCAACCAATGCAGATCAGGACTGGCCGAGAGCACAGCACTGGCCTGGGGATGCTGTCTTCCCTGCTTTGACGGATGTTGCCTACTGCCAGCAGGGTCAACACTCAGCTCCAGCATCTCCCTCTCAGGGCTGGTCCCCTTACCAGCCGTCACCTGCTCCAGCGTCTCACTCTCAGGGCTGGTCCCCTTACCAGCCGTCACCTGCTCCAGCGTCTCACTCTCAGGGCTGGTCCCCTTACCAGCCGTCACAGTCACCTGCTCCAGCAACTCACTCTCAGGGCTGGAACACTTACCAGTTGCCACCAGTGCCAGCTTCTCACTCCCATGGTGGCCATCATGATCAACCGCCACCAGCTCCAACACCTCAACCTCAAGGCGGGCTTCCTTACCAGCCAGTCCCCGCACCACTAGCTTCTCTCAATCTGTTCCGAGAATGGAGATTGCGAAAGGCAACCCTGGAGGATAAGGAGCGAGAGATAAGAGGTGATCCCCCCAAGAAGCGGCAAACTAAAGAAAGCTACCACTAtcagtgtaaaatatgtggTCAGTCAAAGAGCAAACTTACTGGCCATACACAGTTATGGGGGAAATGGTACTGTCCTGCATCTGGACAGACCATCACAGAGTGGAAGAGCTCATTATAGAAtacatatgtactgtatatagttgttttttatagtttttataaTTGTGCTGCACTTTGCTGTTCCATAACAAGCccatacattgtttttttttttaaaagaacacACAAAACTCCCATAAACCGTTAACTGTGTTAACGTAAACATAGATAAACATAACAAGATAACACAAACACTTTGAATAgaaataacaaacacacacaaatctcttTATTGGAGATGTTtgtgttctttaaaaaaaacacacacatacacctttggtgtttgtgttcttaaaaccaaacaaacacaactcTTGTGGTGTAACACATCCATCCTTTGGGTGGAAGATCCAGGTGCAAATCCTGGCAGGAGTGTGCACAATGTTGGCCTAATCAGTATTtaattaaaattgaatttaaaatatattttattattatcatcacaaAGAAGCATGATTGTTATTCTTACCAATTGCCCCAGCTTCAATCCTATTTGTATCTGTTTGGAAGTTATATTTGATGAATTCATAGCACTTTATAAAAGTGTTCGTTAATTGAGAAATGTTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778088.1 True 2312 mRNA 0.47 5 16890450 16893456
XM_039778089.1 False 1574 mRNA 0.46 2 16891765 16893456

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_7 NA coding upstream 11128 16879241 ~ 16879322 (+)
LOC120544386 LOC105417437,LOC106917148 coding upstream 26417 16858015 ~ 16864033 (+)
rab38c LOC104935089,LOC104966993,LOC103375967,LOC100708531 coding upstream 85114 16800599 ~ 16805336 (+)
slc7a3a slc7a3,LOC104966995,LOC106527388,LOC108238988 coding upstream 105354 16770437 ~ 16785096 (+)
snx12 snx12,LOC107386733,LOC106527386,LOC107084209,LOC102223214 coding upstream 127468 16754410 ~ 16762982 (+)
LOC120544325 LOC104933051,LOC104966984,LOC100710405 coding downstream 70503 16963959 ~ 16979710 (+)
LOC120544081 NA coding downstream 217411 17110867 ~ 17121814 (+)
il12bb NA coding downstream 270259 17163715 ~ 17167448 (+)
LOC120543786 rnf145 coding downstream 282985 17176441 ~ 17196281 (+)
LOC120543932 NA coding downstream 570951 17464407 ~ 17467578 (+)
LOC120544389 NA non-coding upstream 114 16885988 ~ 16890336 (+)
G165764 dpp3 non-coding upstream 24790 16864145 ~ 16865660 (+)
G165729 NA non-coding upstream 171183 16700673 ~ 16719267 (+)
G165700 LOC104966060,LOC103373001,LOC103138635,LOC106527390,LOC108238886 non-coding upstream 279448 16540964 ~ 16611002 (+)
G165701 NA non-coding upstream 326546 16562908 ~ 16563904 (+)
G165849 NA non-coding downstream 24403 16917859 ~ 16921242 (+)
G165865 LOC103376153,LOC104933044,LOC106917154,LOC105916235,LOC103138852 non-coding downstream 55214 16948670 ~ 16955280 (+)
G165905 NA non-coding downstream 268477 17161933 ~ 17162448 (+)
G165995 NA non-coding downstream 507153 17400609 ~ 17409951 (+)
G166000 NA non-coding downstream 536785 17430241 ~ 17430648 (+)
LOC120544384 LOC100708800,LOC102793722,LOC102204659,LOC102301331,LOC103375969,LOC101471849,LOC101156840 other upstream 53279 16809886 ~ 16837171 (+)
LOC120544324 NA other upstream 136161 16736664 ~ 16754289 (+)
G165702 NA other upstream 264104 16585142 ~ 16626346 (+)
G165556 yipf5,LOC102777143 other upstream 932315 15956480 ~ 15958135 (+)
gabra6b NA other upstream 1989447 14862661 ~ 14901003 (+)
fgf13b LOC104966980,LOC101465170,LOC103376159,LOC100710934,LOC108238960,LOC103138886,LOC103475676,LOC107084161,LOC106524025 other downstream 102302 16995758 ~ 17020416 (+)
ubtd2 ubtd2,LOC102788971,LOC100712015 other downstream 252020 17145476 ~ 17160145 (+)
LOC120544493 LOC103370065,LOC101073234,LOC102787924,LOC100696184 other downstream 305241 17198697 ~ 17285342 (+)
LOC120544326 bod1,LOC103369971,LOC101484775,LOC100697254,LOC102215513,LOC102291330,LOC102786418,LOC105939389 other downstream 449324 17342780 ~ 17362284 (+)
G165984 tcerg1,LOC102783943 other downstream 456110 17349566 ~ 17490688 (+)

Expression


Co-expression Network