mks1 (mks1)


Basic Information

Item Value
gene id mks1
gene name mks1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 8711261 ~ 8719239 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778669.1
AGAAAACCTACATATCTCTATGGCAACGACAACTATCCATTTGCAGTGCTAATCATGGTGCTAATGTGTCCATGACTGAAAACTTGTTAACTTGTTGTAGTAGCTAGCTGTTTATTACAACATTAACCGTATTCGCCGACATTCTTGCCGCGTACATTTGCAAACTGCAAGCAGTTAGCTAGGTAACAAATTGCATGTCGTTGCGAGTACGAAAAATACGAAAAAGTAGCTGCGTGCTAACGACAAGTGCTAGCTTTGCTAACATCAAAACAATACCGCTTTTTGAATGTTTACTTGCTAAATATGAACTTTATGGCGGACAGTTGGAACACAGATACCGGAGAAGCTGTGTATCGGTCCCGGGATGCTGTCAAAAACTTGAGAATAAGGGTGCGTATAGAGAAGGTGACCTCTACAGCAGCCCTCTCTCAGCACCTCCAACAGCAAGTTCTGTCCCAGCAAGACAGAGGGGACATTGAAATGGAAACCCTCACCTCACGAGGCCAGACAGGTGATAATGAGGAGGAGCTGGTGGTGGGCTGGCAGGAGAAACTCTTTAGTCAGTATGAGATGGAGCTGTTCCAGAGCGATGCAGCATGTCAGACCCCTCTGGACCGTCAGTATCACACAGAAGTCAAGGCCCTGAACAAGTCTAAGCGCCGACGTAATCACAGGATTTTCACATACACAGATCATGACCGCTACACCAGCTGTCTTCCATTGCACCAACTGCAGCACTCCACTGACTTATTGACCACAACCAAATCCAGCCCCACATTCCTGGCTGAAAGGATGGCCAGTGTGAGACACAGACGGCAGGACAGACGCACCATGGATTGTAGTATTCCTAAATCAAAGATCGTCAACTGGGAGCCCACAGAGGAGTTTGTGAAGAGCAGTCATGTGGTGAATAATGCCATGCAGACCATGCACATCATGGGAGACCTGGCTCCCCCTGGAAGGCTGGGCCAGAAAGATAATGAATATTTGCTGGTAACCATAAAAACAGATGGCAGCGGGACAGTCATTGTAAAACCTGACTTCAACAAAGGCAAAGAGCCCTATAGGATTGTAACAGCGGGGGAGAAGAGAGAAGTTTGGCGTCTCACTGTGGAGAATGTATGCACAGCCATGCAAccagaggaacaggagagggaGCAGAACATGTATAGAGACCTGTACGTACGGCACAAGGAGTACCTCAATAGCCTTGTTGGACAGGACTTTGAGATGCCTCCCTTGGGTATTTTGCGTTACCTGATGAATGGAGAGATAGTTTCAGCCAAAGGCTTTGAATATGATAACTTATACATCCACTTCTTCATGGAACTGCCCAACAattggtcCAGCTTGCCATTTCAGTCTCTCTCAGGTGTTACCCAGACCTGCCGGGCCAAAACATTAGGGAAGGAAAATGTAGCTTTCTTCAGTTACCCCTTTAGCTTTGAGGCTTTCTACATGAGTGAAAAAGAGAGTGAGGAGTCAATTCTCCAGTGGCCAGTGATCTACTTCAAGGTTCTTTCTCTGGACTCCTGGCAGCGCTATCGAACTGAAGGCTATGGCTATCTGCTTTTTCCTGCCATGCCTGgTAAACATACAATAACATGCCATACGTGGAGACCCCTTCAGATGGGGACAGGGTCTGCACTGAGGCGCTTCTTTATTGGAGGTTCTCCAGAGCTTGAAGACCACAGCTATGTCAGAATACCCGGGACCTTTAAGGGAGAGAGGCTGAGTCGCTTTGGCTTTTGCACTGAAACCACAGGAAGTGTCACCTTTAATCTGCACTGCCTCCAGCAAGCCAGGGCCTTTGTTGATGCCACCATGCTGAAGAAGAGGAGGCAGAAAGCTTTTGAGCAGCTGGGAGGATTTAGTCAGCAAGGAGCTGTTTGCACCATCCTGGAGGCCTTCCAGAGGGCCAGGAGAAAGATGCACGAGGCCAGAGAAAGTCTTCCAAGAGACCTCGTCAACACCAACTCCCAACTCCACATCGAATCCTCAGCATAGGCGTGAAAAACGGTGAAGAACTGTCACTCTGTCAAATACATGAAAACAACCAAATGGCTTACAGCTACCCTGTAGAATAGTAGCAACATTACCAGCGAGTAGGAGttgccatttttaaatattgcACATTTAGGGGCGTGTTCAGGcctatagtttgtttgctttggtccgaatcagttgatgaCTTTGTACACTTGGAGCGGTTTCCCCTTGGTTTTGTTTCACTcagagaaaaatccaagcgtaccaaaatgcatCACTACCTGTGCTTACTGGTCAGATGTGTCCGGGTgcaggagcaagaaagtaaatacaggaagaggGTCCTGTGTTCTCGAGTAGTGCATATGTCTTGCATCCCCACGGTCAAACCAGACGTTACTGCGTCTATTTCTGTaagagaaacactgcaagccGCTACAGTTTTGcaaaacacacctgactacaggagccgTTTAGCTCAGACTTGCTGAGACCACATAGCTGGGGCAGTTTGAGATCGGATCacattctcaccacaaacgaaccgATCCAGAGTTTGATTAAGAGCATACTGAGACCTCCTTAATGAGGGGATCTAGGCACGCGAGTTTGGTCCACTTTTGGTGCACATCTGAGTGCGATGGATGCATTcacacctgcccaaacgaaccgcacccAGGGGGAACACGAACTCTAGTGCGATTTAACCAAACTAAATGAGGTGTGAAAGCCTCCATATTGTGTTTTGGTGATAGGACTGTGATGTACTGTAACAAGTCAGAAAGAAGAAAACTGTCTTTTTGCAATTTATATTTTGTAAAGGATAAGGTTTGTAAGGTGATTATTGAGTAAATATGGATTTATGTGGTAATTAATATGGAGCAAAGCCAATATGCCTACTACGTATGCTATGTATGTATTGTTCTGTATCTATGGTTATCACcatgtattgtattatttttttacagtcacTGTTTGTCTCAGATTTGGGTAAATAGTCTTATTTTCAGAGTTGTAGACAGTGAGGCTTTTACAAACTGATgcaacacagaaaataaaatactttttagacttgga
>XM_039778670.1
GAAGAAAACCTACATATCTCTATGGCAACGACAACTATCCATTTGCAGTGCTAATCATGGTGCTAATGTGTCCATGACTGAAAACTTGTTAACTTGTTGTAGTAGCTAGCTGTTTATTACAACATTAACCGTATTCGCCGACATTCTTGCCGCGTACATTTGCAAACTGCAAGCAGTTAGCTAGGTAACAAATTGCATGTCGTTGCGAGTACGAAAAATACGAAAAAGTAGCTGCGTGCTAACGACAAGTGCTAGCTTTGCTAACATCAAAACAATACCGCTTTTTGAATGTTTACTTGCTAAATATGAACTTTATGGCGGACAGTTGGAACACAGATACCGGAGAAGCTGTGTATCGGTCCCGGGATGCTGTCAAAAACTTGAGAATAAGGGTGCGTATAGAGAAGGTGACCTCTACAGCAGCCCTCTCTCAGCACCTCCAACAGCAAGTTCTGTCCCAGCAAGACAGAGGGGACATTGAAATGGAAACCCTCACCTCACGAGGCCAGACAGGTGATAATGAGGAGGAGCTGGTGGTGGGCTGGCAGGAGAAACTCTTTAGTCAGTATGAGATGGAGCTGTTCCAGAGCGATGCAGCATGTCAGACCCCTCTGGACCGTCAGTATCACACAGAAGTCAAGGCCCTGAACAAGTCTAAGCGCCGACGTAATCACAGGATTTTCACATACACAGATCATGACCGCTACACCAGCTGTCTTCCATTGCACCAACTGCACTCCACTGACTTATTGACCACAACCAAATCCAGCCCCACATTCCTGGCTGAAAGGATGGCCAGTGTGAGACACAGACGGCAGGACAGACGCACCATGGATTGTAGTATTCCTAAATCAAAGATCGTCAACTGGGAGCCCACAGAGGAGTTTGTGAAGAGCAGTCATGTGGTGAATAATGCCATGCAGACCATGCACATCATGGGAGACCTGGCTCCCCCTGGAAGGCTGGGCCAGAAAGATAATGAATATTTGCTGGTAACCATAAAAACAGATGGCAGCGGGACAGTCATTGTAAAACCTGACTTCAACAAAGGCAAAGAGCCCTATAGGATTGTAACAGCGGGGGAGAAGAGAGAAGTTTGGCGTCTCACTGTGGAGAATGTATGCACAGCCATGCAAccagaggaacaggagagggaGCAGAACATGTATAGAGACCTGTACGTACGGCACAAGGAGTACCTCAATAGCCTTGTTGGACAGGACTTTGAGATGCCTCCCTTGGGTATTTTGCGTTACCTGATGAATGGAGAGATAGTTTCAGCCAAAGGCTTTGAATATGATAACTTATACATCCACTTCTTCATGGAACTGCCCAACAattggtcCAGCTTGCCATTTCAGTCTCTCTCAGGTGTTACCCAGACCTGCCGGGCCAAAACATTAGGGAAGGAAAATGTAGCTTTCTTCAGTTACCCCTTTAGCTTTGAGGCTTTCTACATGAGTGAAAAAGAGAGTGAGGAGTCAATTCTCCAGTGGCCAGTGATCTACTTCAAGGTTCTTTCTCTGGACTCCTGGCAGCGCTATCGAACTGAAGGCTATGGCTATCTGCTTTTTCCTGCCATGCCTGgTAAACATACAATAACATGCCATACGTGGAGACCCCTTCAGATGGGGACAGGGTCTGCACTGAGGCGCTTCTTTATTGGAGGTTCTCCAGAGCTTGAAGACCACAGCTATGTCAGAATACCCGGGACCTTTAAGGGAGAGAGGCTGAGTCGCTTTGGCTTTTGCACTGAAACCACAGGAAGTGTCACCTTTAATCTGCACTGCCTCCAGCAAGCCAGGGCCTTTGTTGATGCCACCATGCTGAAGAAGAGGAGGCAGAAAGCTTTTGAGCAGCTGGGAGGATTTAGTCAGCAAGGAGCTGTTTGCACCATCCTGGAGGCCTTCCAGAGGGCCAGGAGAAAGATGCACGAGGCCAGAGAAAGTCTTCCAAGAGACCTCGTCAACACCAACTCCCAACTCCACATCGAATCCTCAGCATAGGCGTGAAAAACGGTGAAGAACTGTCACTCTGTCAAATACATGAAAACAACCAAATGGCTTACAGCTACCCTGTAGAATAGTAGCAACATTACCAGCGAGTAGGAGttgccatttttaaatattgcACATTTAGGGGCGTGTTCAGGcctatagtttgtttgctttggtccgaatcagttgatgaCTTTGTACACTTGGAGCGGTTTCCCCTTGGTTTTGTTTCACTcagagaaaaatccaagcgtaccaaaatgcatCACTACCTGTGCTTACTGGTCAGATGTGTCCGGGTgcaggagcaagaaagtaaatacaggaagaggGTCCTGTGTTCTCGAGTAGTGCATATGTCTTGCATCCCCACGGTCAAACCAGACGTTACTGCGTCTATTTCTGTaagagaaacactgcaagccGCTACAGTTTTGcaaaacacacctgactacaggagccgTTTAGCTCAGACTTGCTGAGACCACATAGCTGGGGCAGTTTGAGATCGGATCacattctcaccacaaacgaaccgATCCAGAGTTTGATTAAGAGCATACTGAGACCTCCTTAATGAGGGGATCTAGGCACGCGAGTTTGGTCCACTTTTGGTGCACATCTGAGTGCGATGGATGCATTcacacctgcccaaacgaaccgcacccAGGGGGAACACGAACTCTAGTGCGATTTAACCAAACTAAATGAGGTGTGAAAGCCTCCATATTGTGTTTTGGTGATAGGACTGTGATGTACTGTAACAAGTCAGAAAGAAGAAAACTGTCTTTTTGCAATTTATATTTTGTAAAGGATAAGGTTTGTAAGGTGATTATTGAGTAAATATGGATTTATGTGGTAATTAATATGGAGCAAAGCCAATATGCCTACTACGTATGCTATGTATGTATTGTTCTGTATCTATGGTTATCACcatgtattgtattatttttttacagtcacTGTTTGTCTCAGATTTGGGTAAATAGTCTTATTTTCAGAGTTGTAGACAGTGAGGCTTTTACAAACTGATgcaacacagaaaataaaatactttttagacttgga

Function

symbol description
mks1 Acts upstream of or within dorsal convergence. Predicted to be located in cytoplasm. Predicted to be part of MKS complex. Used to study ciliopathy. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 13; Joubert syndrome 28; and Meckel syndrome 1. Orthologous to human MKS1 (MKS transition zone complex subunit 1).

NR:

description
Meckel syndrome type 1 protein isoform X2

GO:

id name namespace
GO:0060030 dorsal convergence biological_process

KEGG:

id description
K19332 MKS1; Meckel syndrome type 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778669.1 True 3066 mRNA 0.46 18 8711263 8719239
XM_039778670.1 False 3065 mRNA 0.46 18 8711261 8719239

Neighbor

gene id symbol gene type direction distance location
pou2f3 pou2f3 coding upstream 142686 8545217 ~ 8568575 (+)
ppm1e ppm1e,LOC102780278 coding upstream 201178 8463580 ~ 8510083 (+)
ttc3 NA coding upstream 288750 8388467 ~ 8422511 (+)
LOC120544532 NA coding upstream 324504 8382048 ~ 8386757 (+)
kctd7 kctd7,LOC102776841 coding upstream 363672 8335532 ~ 8347589 (+)
ap2b1 ap2b1,LOC103360248 coding downstream 1800 8721039 ~ 8745957 (+)
LOC120543844 NA coding downstream 27625 8746864 ~ 8772111 (+)
trnay-gua_52 NA coding downstream 31789 8751028 ~ 8751113 (+)
LOC120543578 NA coding downstream 54585 8773824 ~ 8779122 (+)
LOC120544310 NA coding downstream 67516 8786755 ~ 8788439 (+)
G164163 NA non-coding upstream 12288 8698232 ~ 8698973 (+)
G164162 NA non-coding upstream 14383 8696445 ~ 8696878 (+)
G164136 NA non-coding upstream 74216 8636831 ~ 8637045 (+)
G164135 NA non-coding upstream 76953 8634060 ~ 8634308 (+)
G164115 NA non-coding upstream 115840 8595130 ~ 8595421 (+)
G164208 NA non-coding downstream 84645 8803884 ~ 8804190 (+)
LOC120544514 NA non-coding downstream 220574 8939813 ~ 8944602 (+)
G164293 NA non-coding downstream 289485 9008724 ~ 9183840 (+)
G164309 NA non-coding downstream 361250 9080489 ~ 9178209 (+)
G164334 zbtb16 non-coding downstream 513451 9232690 ~ 9233949 (+)
G164156 NA other upstream 29207 8680133 ~ 8682054 (+)
LOC120544397 LOC101484903,LOC104947545,LOC103360243 other upstream 80400 8628410 ~ 8630861 (+)
kcnj6 kcnj9,kcnj6 other upstream 348818 8353458 ~ 8362443 (+)
LOC120575583 LOC101066275 other upstream 415981 8292709 ~ 8295280 (+)
nsd1b nsd1 other upstream 455722 8212479 ~ 8255539 (+)
bckdk bckdk,LOC102785460 other downstream 246121 8965360 ~ 8987592 (+)
G164466 NA other downstream 1488932 10208171 ~ 10208658 (+)
G164531 NA other downstream 1841404 10560643 ~ 10562266 (+)
LOC120544459 cul5 other downstream 1853126 10572365 ~ 10589296 (+)
LOC120543733 myo7a,LOC101463922,LOC102291063 other downstream 1930758 10649997 ~ 10696751 (+)

Expression


Co-expression Network