kctd7 (kctd7,LOC102776841)


Basic Information

Item Value
gene id kctd7
gene name kctd7,LOC102776841
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 8335532 ~ 8347589 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778691.1
GTATGAGCGAGGACCGTGGACCGTACGGGGCCCAGCCTGGACTGCTAACCCAAAACACTTTGGATTaaattgtagtttttaaatctttaattaTTGAAGGCGGAATTTCACTCCTTCCGCTTTCCTTCTGAAGGCGGGGCTGTGTTCCTGCAGCTGCTCGCGCCCCaccctctgttgttgttgttcttgttttttatattattattattattattattaccaacAGTCGCGTGTTGTGTGGCCATAGGTTGTGGCTCGTGCTGCTTTCACCCCCTGTGATATCAGTTGGCTCGCAGCGCGTATGCAGCAGAATGGCTCGAGCGGTTCTTCTAACGGTTCTGGCGActgcggcggcggcggcgggaGGGACCGGCAGGCTCTGTCCTTCAGCCCACTGCCCGCCGCCACTACACGGGTGAGGCGGTTCATTCAGGAGAGACGGACGCTGCCTCTACCCAGAGTGATGGTGGTATTCTCGGCCGCGGGTGACACCGAGAAACCGGGCGATGCCATGTCCAGCTCGGACTCCGCTGCCGAGGACGAGTTCCGAAAGCCGGCCTCCCCAGCGCCGAGCTTCGCCCTCAGCAAGCCGCTCCGCTCCTCGCTCAACACACCGGAGCTGGAGTTTCCAGAGGTCATCTCTCTGAACGTTGGGGGCACATACTTCACCACTCGCCTGTCCACACTGCGACGATATGAGGACACCATGTTGGCCGCCATGTTCAGCGGGCGTCACTACATCCCACGTGATTCTGAGGGGCGCTACTTCATCGATCGGGATGGAACATATTTTGGGGACATCCTGAACTTCCTCCGAGAAGGTGAGCTACCTCACAGGGACCGGGTGCGAGCGGTGCACAGAGAGGCTCAGTACTACGCGCTTGGCCCGCTGCTGGACAGCCTGGAGGACACTCAGCCGCTCACAGGGGAGAAAGTTCGGCAAGCTTTCCTCGATCTGATGCCCTACTACAGAGACAATCTGGAGCGCATTGTGGAGATTGCCAAAATGAGGGCGATTCAGAAGAAGGCCCGCTTTGCCAAATTGAAGATCTGCGTCTACAAGGAGGAGATGCCCATCACGCCGTACGAGCGTCCTCTTTTTAACTCTCTGCGTTTTGAGCGCTCGGACAGCGAGGCCAAGCTCTTCGAGCATCACTGCGAGGTGGACGTTTCTTTCGGACCCTGGGAGGCCGTAGCGGACGTTTACGACCTGCTGCACTGCATCGTCAGCGACCTGGCCGAGCTCGGCATCACCGCCGAGCAGCAGTGCATCGGCGTCTGCGACAAGCACCTTATCAACCACTACTACTGCAAGAGGCCCATCTACGAGTTCAAGATCACATGGTGGTGAAGCTGGGGGGAGACAGTCGGGGCTGATGGGACCAAAAAGCAAAAAGGATGGATGTTCCATCTTTACTATGACTCGGCCGATATTGGTTTTTGTATTGAAGGCGCCAATATTTTGTGCTGACATCTTAAAATGTGACCTTTAAATCATGATTCAACATGTAAGTATTATGTTTCccccaaaatattttttttattttctttcgtATCAAAGTCATaacactcagttgccagtttattaggtacacccaGCTAAAACGAATGCAGTCTAAAACAACAGTCCTGCAATGAATTAGAGCTGCaaatatgaatcgattagttgtcaactattcaaTTAATCAGCAAcgattttgataatcgatttgaGTTTTTTAaaccagcttcttaaatgtgaa

Function

symbol description
kctd7 Predicted to be involved in membrane hyperpolarization and positive regulation of transporter activity. Predicted to act upstream of or within protein homooligomerization. Predicted to be located in cytosol and membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 3. Orthologous to human KCTD7 (potassium channel tetramerization domain containing 7).

NR:

description
BTB/POZ domain-containing protein KCTD7

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K21917 KCTD7_14; BTB/POZ domain-containing protein KCTD7/14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778691.1 True 1742 mRNA 0.52 4 8335532 8347589

Neighbor

gene id symbol gene type direction distance location
pgk1 pgk1 coding upstream 19808 8295975 ~ 8315724 (+)
pgrmc1 pgrmc1 coding upstream 44494 8282435 ~ 8291038 (+)
znf346 znf346 coding upstream 331370 7991895 ~ 8004162 (+)
LOC120575631 prr7,LOC104963410 coding upstream 733008 7581608 ~ 7602524 (+)
arl10 arl10,LOC104963407,LOC101485920,LOC100692286 coding upstream 883849 7423511 ~ 7451683 (+)
LOC120544532 NA coding downstream 34459 8382048 ~ 8386757 (+)
ttc3 NA coding downstream 40878 8388467 ~ 8422511 (+)
ppm1e ppm1e,LOC102780278 coding downstream 115991 8463580 ~ 8510083 (+)
pou2f3 pou2f3 coding downstream 197628 8545217 ~ 8568575 (+)
mks1 mks1 coding downstream 363672 8711261 ~ 8719239 (+)
G163964 NA non-coding upstream 71357 8259835 ~ 8264175 (+)
G163907 NA non-coding upstream 311334 7944241 ~ 8024198 (+)
G163930 NA non-coding upstream 339867 7994569 ~ 7995665 (+)
G163850 NA non-coding upstream 538562 7795309 ~ 7796970 (+)
LOC120543833 NA non-coding upstream 593068 7739758 ~ 7742464 (+)
G163980 NA non-coding downstream 18814 8366403 ~ 8368088 (+)
G164115 NA non-coding downstream 247541 8595130 ~ 8595421 (+)
G164135 NA non-coding downstream 286471 8634060 ~ 8634308 (+)
G164136 NA non-coding downstream 289242 8636831 ~ 8637045 (+)
G164162 NA non-coding downstream 348856 8696445 ~ 8696878 (+)
LOC120575583 LOC101066275 other upstream 40252 8292709 ~ 8295280 (+)
nsd1b nsd1 other upstream 79993 8212479 ~ 8255539 (+)
LOC120544209 NA other upstream 135420 8197802 ~ 8200112 (+)
G163932 NA other upstream 257839 8074947 ~ 8077693 (+)
G163910 LOC107738138,LOC107554291 other upstream 344903 7984995 ~ 7990629 (+)
kcnj6 kcnj9,kcnj6 other downstream 5869 8353458 ~ 8362443 (+)
LOC120544397 LOC101484903,LOC104947545,LOC103360243 other downstream 280821 8628410 ~ 8630861 (+)
G164156 NA other downstream 332544 8680133 ~ 8682054 (+)
bckdk bckdk,LOC102785460 other downstream 617771 8965360 ~ 8987592 (+)
G164466 NA other downstream 1860582 10208171 ~ 10208658 (+)

Expression


Co-expression Network