serpinf1 (serpinf1)


Basic Information

Item Value
gene id serpinf1
gene name serpinf1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 5295961 ~ 5315558 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826373.1
CGCCGAGCCAGTGGGCGTGTCCGCGCACAGACTCGAGGTCTCGTCTGcagcgagagagagactctGAGCGACGTGGAGCGACCGGGAGCAGAGGAGAGGATGAAGCGAACAACTTTCCTGCTGGTGTTTGGAGTCGTCCTGAGCTTCTGCCAGGCTCAGTCGGACTCTGGCGGCGAGGAGACGGGCGGCGAGGAGGAACATGTGGAGCTGTTCACCACGCCGGCGGCTAAGCTCGGCGCCGCTGCCTCCGATTTCGGCTACAACCTGTTCAGGGCTCTGGCGAGCCGCGAAGCCAGCGCCAACATCTTCCTGGCCCCCGTCAGCGTTACCGCGGCGCTGACGCAGCTCGCCATGGGAGGGTCTGAGCGGGCTCAGAGACAGCTGTTCCGGGCCCTGAGGTACCACACCCTGCAGGACCCCCAGATCCACAACAGCCTCAAAGACCTGCTGGCCTCGGTGCGGGCGCCCGGGAAAGGCCTGAGCACGGCCGCACGCATCTACCTGTCCAGACGACTTCGTCTGAATCAGGAGTTCTTCTCGCTCGTGGAGCAGCAGTACGGAGTTCGTCCCAAGACACTTCAGGGAGGAGCCAAAGATATGAAAGAAATCAACGACTGGGTGGCTCAGGAGACCGGTGGCAAGGTACAGCGTCTCCTGTCCAAGCCCCTCCCTCGAAACACTGGCGTGAACACCGTGAGCGGCGCCTACTTCAAAGGGAAGTGGGTGACTCGGTTCGGCCAGGACGGAGCTATGGAGAGCTTCCAAGTGGATGGTGGCGCACCTGTCCGCGTTCCCATGATGCAGCAGGATAACTACCCCGTGAAGATGGGTGCCGACTCGGATTTGAGCTGCACGATCGCTCAGATTCAGATGCAAGACGACGTCAGCATGTTCGTCTTCCTGCCCGATGACGTGACCTCCAACATGACgctgctggaggagagtctgacCGCGGAGTTCGTCCAGGACCTCTCCATGACGCTCCTTCCTGCCCAGGTGTTCCTCACCCTGCCCGTCCTGAGGCTCAGCTACTCCACGGACCTGCAGCCGCTGCTCGCCGACCTCGgcctctctgattggctagcgGACCCGGACCTGGAGAATATCTCGACTCAGCCCGCCAAGCTCGGCAGCATCAATCACAAGGTCGTCATGGAGACGGCGCCGGAGGGGAACCAGTACCCGAGCGCTGCCGCCTCACCGGCTCACCTGTCCTACCGAGTGGACCGGCCGTTCCTCTACCTGATACGGGACGAGGCCTCGGGGGCGCTGCTCTTCATCGGCAGGGTGGTCAACCCCAAGGACCTGgcaatataacacacacacacacacacacacacacacacacacacacacacacacaca

Function

symbol description
serpinf1 Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in negative regulation of angiogenesis and negative regulation of endopeptidase activity. Predicted to be active in extracellular space. Is expressed in cleithrum; head mesenchyme; notochord; somite; and splanchnocranium. Human ortholog(s) of this gene implicated in several diseases, including brain edema; eye disease (multiple); leukostasis; non-alcoholic steatohepatitis; and osteogenesis imperfecta type 6. Orthologous to human SERPINF1 (serpin family F member 1).

NR:

description
pigment epithelium-derived factor-like

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG:

id description
K19614 SERPINF1, PEDF; pigment epithelium-derived factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826373.1 True 1365 mRNA 0.62 8 5295961 5315558

Neighbor

gene id symbol gene type direction distance location
LOC120544303 NA coding downstream 106934 5186003 ~ 5189027 (-)
LOC120544302 LOC104931089,LOC104947899 coding downstream 121694 5173314 ~ 5174267 (-)
LOC120544301 LOC104947899,LOC104931089 coding downstream 125937 5169071 ~ 5170024 (-)
LOC120543536 LOC104931089,LOC104947899 coding downstream 132012 5163005 ~ 5163949 (-)
LOC120544291 NA coding downstream 194478 5100548 ~ 5101483 (-)
LOC120575590 sap30l,sp30l,LOC105890504 coding upstream 174504 5490062 ~ 5508288 (-)
LOC120575636 LOC100711410,LOC102305690,LOC102207837,LOC103358844,LOC106960860,LOC102785365 coding upstream 342849 5658407 ~ 5814142 (-)
LOC120575637 NA coding upstream 483480 5799038 ~ 5803339 (-)
LOC120575643 LOC103353475 coding upstream 756660 6072218 ~ 6181961 (-)
LOC120544211 NA coding upstream 971348 6286906 ~ 6290324 (-)
G163521 NA non-coding downstream 12051 5278033 ~ 5283910 (-)
G163537 NA non-coding downstream 18738 5267723 ~ 5277223 (-)
G163535 NA non-coding downstream 29546 5264337 ~ 5266415 (-)
G163536 NA non-coding downstream 30548 5264976 ~ 5265413 (-)
G163527 NA non-coding downstream 63281 5231790 ~ 5232680 (-)
G163551 NA non-coding upstream 24806 5340364 ~ 5340882 (-)
G163523 NA non-coding upstream 28095 5343653 ~ 5404052 (-)
G163552 NA non-coding upstream 33137 5348695 ~ 5383611 (-)
G163553 NA non-coding upstream 39740 5355298 ~ 5359622 (-)
G163554 NA non-coding upstream 83987 5399545 ~ 5400024 (-)
LOC120544555 siah2,LOC101471392,LOC102786130 other downstream 474089 4281773 ~ 4821872 (-)
G163315 NA other downstream 475462 4334843 ~ 4820499 (-)
LOC120544563 NA other downstream 545531 4735214 ~ 4750430 (-)
LOC120544552 LOC104935312,LOC100692486,LOC101485649,LOC106922321,LOC102232317,LOC102292363 other downstream 601345 4606736 ~ 4694616 (-)
LOC120544568 LOC104932967,LOC104935308 other downstream 802610 4491005 ~ 4493351 (-)
G163767 NA other upstream 1941580 7257138 ~ 7286265 (-)
wwc1 wwc1 other upstream 2015356 7330914 ~ 7398125 (-)
LOC120543652 LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849 other upstream 2545895 7861453 ~ 7887088 (-)
G164022 kctd7,LOC102776841 other upstream 3031270 8346828 ~ 8352505 (-)
rabgef1 rabgef1,LOC102778478 other upstream 3052937 8368495 ~ 8380575 (-)

Expression


Co-expression Network