LOC120575590 (sap30l,sp30l,LOC105890504)


Basic Information

Item Value
gene id LOC120575590
gene name sap30l,sp30l,LOC105890504
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 5490062 ~ 5508288 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826383.1
GACGGTAACTTCCGCCCAATGCCCATTGTACAAGCTGTTCTGCAAAGAGTGCCGCGGTTGTTGAGCAGCAGTCTCGTTAAATGCGTGATTTCTTCAAAGTTGTTTAATTCGCTGTGGCCGGTCATCGCATTTTAATTTGGAGTCGCGTGAGCTTGTAGAAGTAACGGGTTGTTACGGCGGGGGGGAATAACGGCGACGGTCTCATCGCTGGAGTCGGCTCGTTCAACGGCAGCGCAGCCACCTTGCGGTCCTGCTAGCACTggagttagctaacgttagctagcagctgtgGTGTGCTGTGTGAAGCTTGACTTATATCTGCGGGAACATGTCTTCAATCGGAGGCTATCACGTGTCAACATAAGTCGCCGAAAGAGTCCGAAAATAATCATCAAAAAACGGCTGTTAGCTCGCGAACTAGCCACTTAGCCGCGCTAGCTTCACTAACCGTCACCGGATTGTCTTTCACAAAAGGGCAACCCGTCAACAAGACACTGTGTACAGCCAAAGAAACgctgttctttttatttatacattggGCAGGTTGTACAGATACTATTATAatagtgcagaatgaatgggttTAGCACGGAGGAAGACAGCCACGACGGACCACCGGCTCCGCCGTTTTACGGACAGAGCTGCTGCCTGATCGAGGACGGCGAGCGCTGCGGCCGCTCCGCTGGAAACGCCTCCTTCAGCAAAAGGATCCAGAAGAGCATCTCGCAGAAGAAGCTCAAGCTGGACATCGACAAGAGCgtgagACACCTCTATATCTGCGACTTCCACAAGAACTTCATCCAAAGCGTGCGCaacaagaggaagaggaagaccaGCGACGATGGCGGAGAGTCCCCGGATCATGACGTGGAGGTGCCGGAGGTCGACCTTTTCCAGCTGCAGGTGAACACGCTGAGACGCTACAAGCGACACTACAAGCTGCAGACCCGGCCCGGACTCAACAAGGCCCAGCTGGCAGAGACGGTGAGTCGTCATTTCAGGAATATCCCGGTGAACGAGAAGGAGACGCTTACCTACTTTATTTACATGGTGAAGAGCAGCAAGAGCCGCTTGGACCAGAAAGACGGCGGCGGCGGTGGTGGTGGCGGTGGCGGCAGCAAACCGCTGGACTAaactacaaaaaacaacaacaacaaagtccCCATTAATAATCCACACAGCTGTTCACAAACCCCCGACACCACTAACACggcctccctccgtccctctcctTGTGAAGACCAGACTCTGGGCGTCCTCGGAGGACATTTAACTGAAAACGGAGAATTCAGGCTGGCGTTACGACGCAGTGaattcttttgtttgttttttttgctcttaTTGCTGTCTTCACacgtaaaggtcccatggcatgaaaatgtcactttatgaggttttttaacattaatatgagttccccccccagcctgcctatgg

Function

symbol description
sap30l Predicted to enable several functions, including non-sequence-specific DNA binding activity, bending; phosphatidylinositol phosphate binding activity; and zinc ion binding activity. Acts upstream of or within heart looping. Predicted to be located in nucleolus. Predicted to be part of histone deacetylase complex. Is expressed in several structures, including anterior neural rod; pectoral fin bud; pericardial region; pleuroperitoneal region; and trunk. Orthologous to several human genes including SAP30L (SAP30 like).

NR:

description
PREDICTED: histone deacetylase complex subunit SAP30L

GO: NA

KEGG:

id description
K19202 SAP30; histone deacetylase complex subunit SAP30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826383.1 True 1437 mRNA 0.52 4 5490062 5508288

Neighbor

gene id symbol gene type direction distance location
serpinf1 serpinf1 coding downstream 174504 5295961 ~ 5315558 (-)
LOC120544303 NA coding downstream 301035 5186003 ~ 5189027 (-)
LOC120544302 LOC104931089,LOC104947899 coding downstream 315795 5173314 ~ 5174267 (-)
LOC120544301 LOC104947899,LOC104931089 coding downstream 320038 5169071 ~ 5170024 (-)
LOC120543536 LOC104931089,LOC104947899 coding downstream 326113 5163005 ~ 5163949 (-)
LOC120575636 LOC100711410,LOC102305690,LOC102207837,LOC103358844,LOC106960860,LOC102785365 coding upstream 150119 5658407 ~ 5814142 (-)
LOC120575637 NA coding upstream 290750 5799038 ~ 5803339 (-)
LOC120575643 LOC103353475 coding upstream 563930 6072218 ~ 6181961 (-)
LOC120544211 NA coding upstream 778618 6286906 ~ 6290324 (-)
gemin5 LOC102786240 coding upstream 820559 6328847 ~ 6363792 (-)
G163561 NA non-coding downstream 52249 5434433 ~ 5437813 (-)
G163523 NA non-coding downstream 86010 5343653 ~ 5404052 (-)
G163554 NA non-coding downstream 90038 5399545 ~ 5400024 (-)
G163552 NA non-coding downstream 106451 5348695 ~ 5383611 (-)
G163553 NA non-coding downstream 130440 5355298 ~ 5359622 (-)
G163585 NA non-coding upstream 125063 5633351 ~ 5634063 (-)
G163624 NA non-coding upstream 142411 5650699 ~ 5653658 (-)
G163625 NA non-coding upstream 174865 5683153 ~ 5683413 (-)
G163643 NA non-coding upstream 654296 6162584 ~ 6163275 (-)
G163689 NA non-coding upstream 747096 6255384 ~ 6255652 (-)
LOC120544555 siah2,LOC101471392,LOC102786130 other downstream 668190 4281773 ~ 4821872 (-)
G163315 NA other downstream 669563 4334843 ~ 4820499 (-)
LOC120544563 NA other downstream 739632 4735214 ~ 4750430 (-)
LOC120544552 LOC104935312,LOC100692486,LOC101485649,LOC106922321,LOC102232317,LOC102292363 other downstream 795446 4606736 ~ 4694616 (-)
LOC120544568 LOC104932967,LOC104935308 other downstream 996711 4491005 ~ 4493351 (-)
G163767 NA other upstream 1748850 7257138 ~ 7286265 (-)
wwc1 wwc1 other upstream 1822626 7330914 ~ 7398125 (-)
LOC120543652 LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849 other upstream 2353165 7861453 ~ 7887088 (-)
G164022 kctd7,LOC102776841 other upstream 2838540 8346828 ~ 8352505 (-)
rabgef1 rabgef1,LOC102778478 other upstream 2860207 8368495 ~ 8380575 (-)

Expression


Co-expression Network