LOC120544008


Basic Information

Item Value
gene id LOC120544008
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 7441243 ~ 7451496 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636423.1
GGTTTGGTTCAGAGGATCTTTGCTGTAACTGTGCCAGAGTGACAGCTCAGAGAAAACCGCTTCCTGTTAGTCTGCTTGTGGAACTTTGCCCGACACAAACAGGAAGAACTTAAAGGACTATTCCAAGTTTTTCTTTGAAGTTTTACGCCCTTAAAAAGACATCGCTGACAACCACGGGCAGCTGGGGCTCCACCCTCAGCAGGCGGTGCAGCTCCGCCTTGGCCAATGGGAGGCGGCTCCTGTCAGAGGAGTCCACCACGTACACCAGAACGTGAGTCTTTCTCACGTAGTCCGAC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636423.1 True 296 lncRNA 0.52 3 7441243 7451496

Neighbor

gene id symbol gene type direction distance location
rars1 rars coding downstream 119456 7290596 ~ 7321787 (-)
LOC120575570 ddc,LOC102780833 coding downstream 1044916 6381059 ~ 6396327 (-)
gemin5 LOC102786240 coding downstream 1077451 6328847 ~ 6363792 (-)
LOC120544211 NA coding downstream 1150919 6286906 ~ 6290324 (-)
LOC120575643 LOC103353475 coding downstream 1259282 6072218 ~ 6181961 (-)
nop16 NA coding upstream 7268 7458764 ~ 7471087 (-)
dbn1 dbn1 coding upstream 175204 7626700 ~ 7782793 (-)
zgc:77151 NA coding upstream 350721 7802217 ~ 7846803 (-)
LOC120543650 NA coding upstream 455924 7907420 ~ 7948944 (-)
uimc1 NA coding upstream 502521 7954017 ~ 7980904 (-)
G163865 NA non-coding downstream 23021 7417210 ~ 7418222 (-)
G163862 NA non-coding downstream 69510 7371265 ~ 7371733 (-)
G163860 NA non-coding downstream 113350 7326222 ~ 7327893 (-)
G163742 NA non-coding downstream 349863 7091101 ~ 7091380 (-)
G163734 NA non-coding downstream 367989 7072946 ~ 7073254 (-)
G163894 NA non-coding upstream 343823 7795319 ~ 7796512 (-)
G163896 NA non-coding upstream 348404 7799900 ~ 7802200 (-)
LOC120543653 NA non-coding upstream 531572 7983068 ~ 7984196 (-)
G163956 NA non-coding upstream 613280 8064776 ~ 8065199 (-)
G163958 NA non-coding upstream 701585 8153081 ~ 8153347 (-)
wwc1 wwc1 other downstream 43118 7330914 ~ 7398125 (-)
G163767 NA other downstream 154978 7257138 ~ 7286265 (-)
LOC120544563 NA other downstream 2690813 4735214 ~ 4750430 (-)
LOC120544552 LOC104935312,LOC100692486,LOC101485649,LOC106922321,LOC102232317,LOC102292363 other downstream 2746627 4606736 ~ 4694616 (-)
LOC120544568 LOC104932967,LOC104935308 other downstream 2947892 4491005 ~ 4493351 (-)
LOC120543652 LOC101463747,LOC100690676,LOC102213522,LOC102314573,LOC102780849 other upstream 409957 7861453 ~ 7887088 (-)
G164022 kctd7,LOC102776841 other upstream 895332 8346828 ~ 8352505 (-)
rabgef1 rabgef1,LOC102778478 other upstream 916999 8368495 ~ 8380575 (-)
smg8 smg8,LOC102779993 other upstream 1000081 8451577 ~ 8465799 (-)
trim37 trim37,LOC102780947 other upstream 1060678 8512174 ~ 8543503 (-)

Expression


Co-expression Network