LOC120544389


Basic Information

Item Value
gene id LOC120544389
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 16885988 ~ 16890336 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636494.1
CTGTCCTGCAGTTGCCACGCCCCCTATACTTTGCCACTCAGTTCCATCTGTAGTTTACCACACCTGCAATCAATCTGCCTCAATCAGCCACAGGCTCAAATAGGCAGCACCTGTGCACACAGCCCTTCCTTTGTTTAAAACCACATGGAGGATCTTTGATGCTGGACATGCTGTGTTTCTTGCCTTGTGTGCGTTATTGCTCTATGTAAGTTCCATAGTTTTACTTGGCATACTCTGAAAGAAAGTGCTAATGTCATTATAAGGCGAGTGCCTCTCCTGTATTCCTGTTTGTGctgtttaaaggtgctgtataTTGAAcagttaaaagtaaaataagttTACATTGCTCGTTTGAGCTACCTGAGATATGTGCATTGGAGTAGTTCTATTCATTGTTACGTTAATAACAGAGCAGATTATGTATGTTTATTGTGGCCTTGTTTGTGCCTTTGTGATACTAACTATATCCCATATCCTTCCCCCTcagaaaccacacacccaaacacgtAACTATACAAACCTGTAACCTGTcttcttgataatgcttggaaTAAAAGAATTGTGGAATTGAAAGTGATTGGACAAGAACTGTTCTTACTGACACCTCCACTGGTCTCACGCCAGCCACCCACAGCCCTCTACACCTCCTTTTTGgttaatttttgttgttttccatatcTTGTCCCTAATATCTGCAGAAATGACAAAGACTGGGAAACCAGATGCCTACTGGGCAGGTGTGATGTCCCTGTATGCCCAGGGAAAGTACACATTTACAACTGGCAAGAGGCCGGGTCCAGGAGATGGAGGGCGGTAATGCTGCGGATTGCTGATTGTCCTCTGACGCCCCTGAAAGGTCAAACTACTGTCCGCAAACTAGACATATTTGGGAAAACGATACCCTCAGCAGGGAAAGCGGCATTCAGTGCAGGTCAGCTGTGTCTCAATTCAGCTGAGAGTTTACAGGCCAGTGCAGGTGCAACAGCTACAGGTTCTCAGGCCAGTGCAGCAGCTGGGAAAGCTGTTACAGTTCCAGGACCACAGACGGGTGTAGCTCAGAAAACTCCAGCTCTGTGCAGGATGAGCGAGGGGAAGTCTCTCACATGCTCGCTGTGTAGTCAGGAGATGTGCGAGGACTACACGCAGCACCTGTCAGACTACCACACCCAGGAACAGTGTGGTGCAAAGGCCTGGGGGGCTTTTGGATTGTTACAGCACATAGAGGAATGTCACATTTTGACCAACAGACCTCCCAGATGTTGCTGCTCCTACCACTCCCATAGCCCAAGAGACAACACAGCAACCGAGTGACCCACCCGATGTTCCTGCTCCTCCCACAGCCCATGAGACGTCACTAGCACCACCACGACACCCACTCACTCTGCAGCCTCCTGAGGTAAACTGGGTGAATTTTCTACCCAAGCAGTTCACCAGAGTCATCCAGCCAGCTGACCAGGAGTGGATCGCCCACATTTTATGACAGTACTGGACAGCTGAAACAAAACCTGTCTCAGAACTGGTTTCATCCCCCCAGCCCCACCAAATCCATCTCACCTCCTGATCCACATAATTATTTCCGCCAGCGGATGTTCCTGTGGGCTCCAATGCGGATGTGGGGCATCCCTCTGAAATGCACCCAGTGCAATAGGAAGATGGACCATTCTGGCATTTACACTAAAGCCAGGGAGGTAATTGACATTGATTCGAAATATTACCTGGTGGGTGGAGACTATCCAAGGTGCAGCAAATGCATGATTCCCGTCTGCCCTTGGagcattgacattttaaaacggCTCGATCCCTCCCACCGTTACAAATTCCCAGCTGTTCTCACAACCCATTTGGCACTGGACAGGAGGTGTGTTGCGATGTTGCGCCCAAGAACATTGGGGAACAGCTCCAGCTATTTACAGCAAGCCTTGCAGGAGATACACAGTGAGGAGTGGGCTAGGCGGACCATCGACTACCTCACTGATTGTGAGGTCCACAAAAAGTCCTGTGTCCTCACCCAGTCTCAAGCTCTGTATCAGCTGCCACCACCCTTCAGTCCCCTGCCCCTGGCCCAGTGGTTTGAGACGGTTCATGCCAATGACATTCTGAGTCACCTTGACGAGTTGAAGGGTGTGATCACTTAAACGCTTGGTAGAATCTTGAAACTGGACTCTACTAAGAAGatcACAAAAAACTTGCTGGTGGCATTGAGGGCACAGCCACATGGATGTCTAATATCGGCAATGAATTTGGGCAAGTGCTGAATTCTGTGCTGACCACTGGTGAGGGGGCTGGCCTTGATGACCTTTGTCAAGGCATCGTCAAAAGGTACAGCGATGCTGGTGAGCCACAGCCAGATGCCATATATGTGGACAGAGACTGCTGCAGTGAGACAGGGGTGGGTCCAGTTCTCACTTGGTTTCGACCATGGACGTCAACGGTGAGACTGGATATTTTCCATTTTATGAGGCGGTTCACAAAGGGTCTTACGACAGAGCACCACCCACTGTATGGCACGTTCTGCTCAAAGTTGTCCACTTGAATCTTTGAGTGGGACAAAGAGGACATTCACCAACTCAAAGAGGCCAAGAGGgcagaatttaaaaaagaaaaaaaaaaaaaaaaaaagcaccaggGTCACATACCCACTGACTCTCAGGTGTTATCCAGCATCACATCCAGTGAGCTGGTCAAGCACTGCCGCAGGAGAACCCGAGGAGTTGAGGAGACCCGCGTTCTAATCCAGCAACTGCTGGACTCCATGTGGGACCTCACAGACACAAGTGGCTTGCATCTCATAAATCATGACAGCATGTCTCTTGTGTGGGAGGTACAGCAGAAGCACTTGCCCTGCATCCAAGATCCACCTGGTGTCCAGTTGTACACGAACACTGGATCAGGCCTGGAGAAGGGAGACAAAACGCTGGACGTCCTAAGATGTGGCAGAGGATCCTCCTCGCTCGAGAGCTTTCATCTGCACCAGTGTGGTTTCAT
>XR_005636495.1
CTGTCCTGCAGTTGCCACGCCCCCTATACTTTGCCACTCAGTTCCATCTGTAGTTTACCACACCTGCAATCAATCTGCCTCAATCAGCCACAGGCTCAAATAGGCAGCACCTGTGCACACAGCCCTTCCTTTGTTTAAAACCACATGGAGGATCTTTGATGCTGGACATGCTGTGTTTCTTGCCTTGTGTGCGTTATTGCTCTATaaaccacacacccaaacacgtAACTATACAAACCTGTAACCTGTcttcttgataatgcttggaaTAAAAGAATTGTGGAATTGAAAGTGATTGGACAAGAACTGTTCTTACTGACACCTCCACTGGTCTCACGCCAGCCACCCACAGCCCTCTACACCTCCTTTTTGgttaatttttgttgttttccatatcTTGTCCCTAATATCTGCAGAAATGACAAAGACTGGGAAACCAGATGCCTACTGGGCAGGTGTGATGTCCCTGTATGCCCAGGGAAAGTACACATTTACAACTGGCAAGAGGCCGGGTCCAGGAGATGGAGGGCGGTAATGCTGCGGATTGCTGATTGTCCTCTGACGCCCCTGAAAGGTCAAACTACTGTCCGCAAACTAGACATATTTGGGAAAACGATACCCTCAGCAGGGAAAGCGGCATTCAGTGCAGGTCAGCTGTGTCTCAATTCAGCTGAGAGTTTACAGGCCAGTGCAGGTGCAACAGCTACAGGTTCTCAGGCCAGTGCAGCAGCTGGGAAAGCTGTTACAGTTCCAGGACCACAGACGGGTGTAGCTCAGAAAACTCCAGCTCTGTGCAGGATGAGCGAGGGGAAGTCTCTCACATGCTCGCTGTGTAGTCAGGAGATGTGCGAGGACTACACGCAGCACCTGTCAGACTACCACACCCAGGAACAGTGTGGTGCAAAGGCCTGGGGGGCTTTTGGATTGTTACAGCACATAGAGGAATGTCACATTTTGACCAACAGACCTCCCAGATGTTGCTGCTCCTACCACTCCCATAGCCCAAGAGACAACACAGCAACCGAGTGACCCACCCGATGTTCCTGCTCCTCCCACAGCCCATGAGACGTCACTAGCACCACCACGACACCCACTCACTCTGCAGCCTCCTGAGGTAAACTGGGTGAATTTTCTACCCAAGCAGTTCACCAGAGTCATCCAGCCAGCTGACCAGGAGTGGATCGCCCACATTTTATGACAGTACTGGACAGCTGAAACAAAACCTGTCTCAGAACTGGTTTCATCCCCCCAGCCCCACCAAATCCATCTCACCTCCTGATCCACATAATTATTTCCGCCAGCGGATGTTCCTGTGGGCTCCAATGCGGATGTGGGGCATCCCTCTGAAATGCACCCAGTGCAATAGGAAGATGGACCATTCTGGCATTTACACTAAAGCCAGGGAGGTAATTGACATTGATTCGAAATATTACCTGGTGGGTGGAGACTATCCAAGGTGCAGCAAATGCATGATTCCCGTCTGCCCTTGGagcattgacattttaaaacggCTCGATCCCTCCCACCGTTACAAATTCCCAGCTGTTCTCACAACCCATTTGGCACTGGACAGGAGGTGTGTTGCGATGTTGCGCCCAAGAACATTGGGGAACAGCTCCAGCTATTTACAGCAAGCCTTGCAGGAGATACACAGTGAGGAGTGGGCTAGGCGGACCATCGACTACCTCACTGATTGTGAGGTCCACAAAAAGTCCTGTGTCCTCACCCAGTCTCAAGCTCTGTATCAGCTGCCACCACCCTTCAGTCCCCTGCCCCTGGCCCAGTGGTTTGAGACGGTTCATGCCAATGACATTCTGAGTCACCTTGACGAGTTGAAGGGTGTGATCACTTAAACGCTTGGTAGAATCTTGAAACTGGACTCTACTAAGAAGatcACAAAAAACTTGCTGGTGGCATTGAGGGCACAGCCACATGGATGTCTAATATCGGCAATGAATTTGGGCAAGTGCTGAATTCTGTGCTGACCACTGGTGAGGGGGCTGGCCTTGATGACCTTTGTCAAGGCATCGTCAAAAGGTACAGCGATGCTGGTGAGCCACAGCCAGATGCCATATATGTGGACAGAGACTGCTGCAGTGAGACAGGGGTGGGTCCAGTTCTCACTTGGTTTCGACCATGGACGTCAACGGTGAGACTGGATATTTTCCATTTTATGAGGCGGTTCACAAAGGGTCTTACGACAGAGCACCACCCACTGTATGGCACGTTCTGCTCAAAGTTGTCCACTTGAATCTTTGAGTGGGACAAAGAGGACATTCACCAACTCAAAGAGGCCAAGAGGgcagaatttaaaaaagaaaaaaaaaaaaaaaaaaagcaccaggGTCACATACCCACTGACTCTCAGGTGTTATCCAGCATCACATCCAGTGAGCTGGTCAAGCACTGCCGCAGGAGAACCCGAGGAGTTGAGGAGACCCGCGTTCTAATCCAGCAACTGCTGGACTCCATGTGGGACCTCACAGACACAAGTGGCTTGCATCTCATAAATCATGACAGCATGTCTCTTGTGTGGGAGGTACAGCAGAAGCACTTGCCCTGCATCCAAGATCCACCTGGTGTCCAGTTGTACACGAACACTGGATCAGGCCTGGAGAAGGGAGACAAAACGCTGGACGTCCTAAGATGTGGCAGAGGATCCTCCTCGCTCGAGAGCTTTCATCTGCACCAGTGTGGTTTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636494.1 True 2985 lncRNA 0.49 3 16885988 16890336
XR_005636495.1 False 2703 lncRNA 0.50 4 16885988 16890336

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_7 NA coding upstream 6666 16879241 ~ 16879322 (+)
LOC120544386 LOC105417437,LOC106917148 coding upstream 21955 16858015 ~ 16864033 (+)
rab38c LOC104935089,LOC104966993,LOC103375967,LOC100708531 coding upstream 80652 16800599 ~ 16805336 (+)
slc7a3a slc7a3,LOC104966995,LOC106527388,LOC108238988 coding upstream 100892 16770437 ~ 16785096 (+)
snx12 snx12,LOC107386733,LOC106527386,LOC107084209,LOC102223214 coding upstream 123006 16754410 ~ 16762982 (+)
LOC120544388 NA coding downstream 114 16890450 ~ 16893456 (+)
LOC120544325 LOC104933051,LOC104966984,LOC100710405 coding downstream 73623 16963959 ~ 16979710 (+)
LOC120544081 NA coding downstream 220531 17110867 ~ 17121814 (+)
il12bb NA coding downstream 273379 17163715 ~ 17167448 (+)
LOC120543786 rnf145 coding downstream 286105 17176441 ~ 17196281 (+)
G165764 dpp3 non-coding upstream 20328 16864145 ~ 16865660 (+)
G165729 NA non-coding upstream 166721 16700673 ~ 16719267 (+)
G165700 LOC104966060,LOC103373001,LOC103138635,LOC106527390,LOC108238886 non-coding upstream 274986 16540964 ~ 16611002 (+)
G165701 NA non-coding upstream 322084 16562908 ~ 16563904 (+)
LOC120544700 NA non-coding upstream 377811 16406852 ~ 16508177 (+)
G165849 NA non-coding downstream 27523 16917859 ~ 16921242 (+)
G165865 LOC103376153,LOC104933044,LOC106917154,LOC105916235,LOC103138852 non-coding downstream 58334 16948670 ~ 16955280 (+)
G165905 NA non-coding downstream 271597 17161933 ~ 17162448 (+)
G165995 NA non-coding downstream 510273 17400609 ~ 17409951 (+)
G166000 NA non-coding downstream 539905 17430241 ~ 17430648 (+)
LOC120544384 LOC100708800,LOC102793722,LOC102204659,LOC102301331,LOC103375969,LOC101471849,LOC101156840 other upstream 48817 16809886 ~ 16837171 (+)
LOC120544324 NA other upstream 131699 16736664 ~ 16754289 (+)
G165702 NA other upstream 259642 16585142 ~ 16626346 (+)
G165556 yipf5,LOC102777143 other upstream 927853 15956480 ~ 15958135 (+)
gabra6b NA other upstream 1984985 14862661 ~ 14901003 (+)
fgf13b LOC104966980,LOC101465170,LOC103376159,LOC100710934,LOC108238960,LOC103138886,LOC103475676,LOC107084161,LOC106524025 other downstream 105422 16995758 ~ 17020416 (+)
ubtd2 ubtd2,LOC102788971,LOC100712015 other downstream 255140 17145476 ~ 17160145 (+)
LOC120544493 LOC103370065,LOC101073234,LOC102787924,LOC100696184 other downstream 308361 17198697 ~ 17285342 (+)
LOC120544326 bod1,LOC103369971,LOC101484775,LOC100697254,LOC102215513,LOC102291330,LOC102786418,LOC105939389 other downstream 452444 17342780 ~ 17362284 (+)
G165984 tcerg1,LOC102783943 other downstream 459230 17349566 ~ 17490688 (+)

Expression


Co-expression Network