LOC120544514


Basic Information

Item Value
gene id LOC120544514
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 8939813 ~ 8944602 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005636510.1
CGCGacgcagctaacgttagctaacaagcTACATTTGAAAAGCCTCTTCTCACTTTAATTCCGTCGCCAATACGAGCTTACTACATAGTCGTTATGTTGTTGTGCCTATTGTCAGAAAGCTAGCTATCTCTTCTTGGCGACGGCAACTTAAAGTCCCCTGAGAAATCAACCCGGCTTATAATAAACTCGGGGTGTTAATAAGCTCACATAGAGCGATCAACAAACAGGTTGTGCAGCAGTTTCAGCCAGTCAACGACAAGCCAGCAGCCAGAGTAAACAAGGATGTCCGGTCGCAGCCTTCAAAGTAAAGGTGGTGTATGTTGGGATTACATCTGTGACACCCCAGTTCCAGTCACTGCAGGACATAAACTACATGTGTTCCACATAACCTGTTTCCTTCGACCAGACTGGGACTCATTCCACACATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005636510.1 True 429 lncRNA 0.46 3 8939813 8944602

Neighbor

gene id symbol gene type direction distance location
mcama NA coding upstream 28165 8857113 ~ 8911648 (+)
tmem120a LOC104921110,LOC103360253 coding upstream 115301 8815703 ~ 8824512 (+)
styxl1 styxl1 coding upstream 125520 8804792 ~ 8814293 (+)
LOC120544310 NA coding upstream 151374 8786755 ~ 8788439 (+)
LOC120543578 NA coding upstream 160691 8773824 ~ 8779122 (+)
lrwd1 LOC107098205,LOC104945841 coding downstream 3813 8948415 ~ 8962917 (+)
htr3b htr3b coding downstream 100663 9045265 ~ 9054135 (+)
htr3a htr3a,LOC106514605,LOC108238041,LOC103395383 coding downstream 113758 9058360 ~ 9070105 (+)
cadm1a cadm1,LOC108238063,LOC107387207 coding downstream 717320 9661922 ~ 10076292 (+)
LOC120544618 sc5d,LOC102788886 coding downstream 1155269 10099871 ~ 10107367 (+)
G164208 NA non-coding upstream 135623 8803884 ~ 8804190 (+)
G164163 NA non-coding upstream 240840 8698232 ~ 8698973 (+)
G164162 NA non-coding upstream 242935 8696445 ~ 8696878 (+)
G164136 NA non-coding upstream 302768 8636831 ~ 8637045 (+)
G164135 NA non-coding upstream 305505 8634060 ~ 8634308 (+)
G164293 NA non-coding downstream 64122 9008724 ~ 9183840 (+)
G164309 NA non-coding downstream 135887 9080489 ~ 9178209 (+)
G164334 zbtb16 non-coding downstream 288088 9232690 ~ 9233949 (+)
G164335 NA non-coding downstream 291878 9236480 ~ 9236971 (+)
G164336 NA non-coding downstream 324276 9268878 ~ 9275413 (+)
G164156 NA other upstream 257759 8680133 ~ 8682054 (+)
LOC120544397 LOC101484903,LOC104947545,LOC103360243 other upstream 308952 8628410 ~ 8630861 (+)
kcnj6 kcnj9,kcnj6 other upstream 577370 8353458 ~ 8362443 (+)
LOC120575583 LOC101066275 other upstream 644533 8292709 ~ 8295280 (+)
nsd1b nsd1 other upstream 684274 8212479 ~ 8255539 (+)
bckdk bckdk,LOC102785460 other downstream 20758 8965360 ~ 8987592 (+)
G164466 NA other downstream 1263569 10208171 ~ 10208658 (+)
G164531 NA other downstream 1616041 10560643 ~ 10562266 (+)
LOC120544459 cul5 other downstream 1627763 10572365 ~ 10589296 (+)
LOC120543733 myo7a,LOC101463922,LOC102291063 other downstream 1705395 10649997 ~ 10696751 (+)

Expression


Co-expression Network