trnat-agu_7


Basic Information

Item Value
gene id trnat-agu_7
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 17527235 ~ 17527308 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_947
GGCGCCGTGGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGAtcctgggttcgaatcccagcGGTGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_947 True 74 tRNA 0.57 1 17527235 17527308

Neighbor

gene id symbol gene type direction distance location
LOC120544634 NA coding upstream 85 17525646 ~ 17527150 (+)
asl asl coding upstream 28969 17490012 ~ 17498266 (+)
LOC120543932 NA coding upstream 59657 17464407 ~ 17467578 (+)
LOC120543786 rnf145 coding upstream 330954 17176441 ~ 17196281 (+)
il12bb NA coding upstream 359787 17163715 ~ 17167448 (+)
slc13a2 slc13a2,LOC108238977,LOC106523460,LOC103362294 coding downstream 7926 17535234 ~ 17544619 (+)
cryba1b LOC103139184,LOC104958815,LOC104934409,LOC103475646,LOC103362292 coding downstream 41462 17568770 ~ 17570951 (+)
LOC120544640 LOC103362291,LOC104958819,LOC100699206,LOC103139201 coding downstream 45308 17572616 ~ 17614138 (+)
c16h17orf97 NA coding downstream 103838 17631146 ~ 17633871 (+)
LOC120544327 NA coding downstream 121677 17648985 ~ 17653759 (+)
G166028 LOC104958813,LOC105939289,LOC101064037,LOC102197733 non-coding upstream 12675 17511177 ~ 17514560 (+)
G166024 NA non-coding upstream 19500 17506839 ~ 17507735 (+)
G166000 NA non-coding upstream 96587 17430241 ~ 17430648 (+)
G165995 NA non-coding upstream 117284 17400609 ~ 17409951 (+)
G165905 NA non-coding upstream 364787 17161933 ~ 17162448 (+)
G166032 NA non-coding downstream 1400 17528708 ~ 17530096 (+)
LOC120544639 NA non-coding downstream 36408 17563716 ~ 17565417 (+)
G166042 NA non-coding downstream 59133 17586441 ~ 17606988 (+)
trnaw-cca_17 NA non-coding downstream 103333 17630641 ~ 17630712 (+)
G166049 NA non-coding downstream 107461 17634769 ~ 17635430 (+)
G165984 tcerg1,LOC102783943 other upstream 36547 17349566 ~ 17490688 (+)
LOC120544326 bod1,LOC103369971,LOC101484775,LOC100697254,LOC102215513,LOC102291330,LOC102786418,LOC105939389 other upstream 164951 17342780 ~ 17362284 (+)
LOC120544493 LOC103370065,LOC101073234,LOC102787924,LOC100696184 other upstream 241893 17198697 ~ 17285342 (+)
ubtd2 ubtd2,LOC102788971,LOC100712015 other upstream 367090 17145476 ~ 17160145 (+)
fgf13b LOC104966980,LOC101465170,LOC103376159,LOC100710934,LOC108238960,LOC103138886,LOC103475676,LOC107084161,LOC106524025 other upstream 506819 16995758 ~ 17020416 (+)
LOC120575677 LOC103362304,LOC102306182,LOC100703890 other downstream 142807 17670115 ~ 17685280 (+)
G166064 NA other downstream 227563 17754871 ~ 17766415 (+)
LOC120543551 LOC104929447,LOC101164739,LOC103354082 other downstream 948851 18476159 ~ 18477783 (+)
ccdc169 ccdc169,LOC104928215,LOC103354101,LOC102289504,LOC102794168 other downstream 1526835 19054143 ~ 19061286 (+)
G166610 NA other downstream 1684114 19211422 ~ 19215527 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnat-agu-153 NA coding NC_048593.1 CM023247.2 28591552 ~ 28591625 (+)
striped catfish (Pangasianodon hypophthalmus) trnat-agu_18 NA coding NC_047619.1 CM018565.1 2535466 ~ 2535539 (-)
bowfin (Amia calva) AMCG00020677 NA coding CM030127.1 CM030127.1 29059415 ~ 29071096 (-)
tiger barb (Puntius tetrazona) trnat-agu_68 NA coding NC_056723.1 CM032092.1 13168563 ~ 13168636 (+)
mexican tetra (Astyanax mexicanus) trnat-agu_18 NA coding NW_019172695.1 APWO02002293.1 1979 ~ 2052 (-)
mexican tetra (Astyanax mexicanus) trnat-agu_46 NA coding NW_019172925.1 APWO02000034.1 729125 ~ 729198 (+)