LOC120546083 (samd3,LOC101476819)


Basic Information

Item Value
gene id LOC120546083
gene name samd3,LOC101476819
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 71010 ~ 71798 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU232606
CAgacggaaggcatcaaaaactgggaagacagcagatgctctggctgaaattttaaaaatccacgatgaacaggaaatccatgacatacacaccaagcgcactactgttctccacgtccttcctgtgtatctgcgcGAGGACGTCTCTGGATGTTTAAGAACCTGCACAgatgAGTCTGATGAGCCAGAGCTTGATGGTGTTGCAGTGGGC
>XR_005636784.1
aaggcatcaaaaactgggaagacagcagatgctctggctgaaattttaaaaatccacgatgaacaggaaatccatgacatacacaccaagcgcactactgttctccacgtccttcctgtgtatctgcgcGAGGACGTCTCTGGATGTTTAAGAACCTGCACAgatgAGTCTGATGAGCCAGAGCTTGATGGTGTTGCAGTGGGCCTCATTACTTTCATCGGGTGACCATGA

Function

symbol description
samd3 Orthologous to human SAMD3 (sterile alpha motif domain containing 3).

NR:

description
uncharacterized protein LOC101476819

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232606 False 211 lncRNA 0.49 3 71037 71798
XR_005636784.1 True 231 lncRNA 0.48 3 71010 71791

Neighbor

gene id symbol gene type direction distance location
LOC120546082 LOC103362445,LOC102082667,LOC102197263,LOC102301125,LOC101469328 coding upstream 72410 144208 ~ 184783 (-)
mapkap1 mapkap1,LOC102781088 coding upstream 230698 302496 ~ 342377 (-)
LOC120545827 NA coding upstream 386286 458084 ~ 459276 (-)
nek6 LOC102297357,LOC102792581,LOC100704402,LOC104936759,LOC101471322 coding upstream 461581 533379 ~ 564782 (-)
LOC120545215 NA coding upstream 524095 595893 ~ 621737 (-)
G171636 NA non-coding upstream 223268 295066 ~ 295285 (-)
G171674 NA non-coding upstream 407996 479794 ~ 480151 (-)
G171680 NA non-coding upstream 447042 518840 ~ 519070 (-)
G171718 NA non-coding upstream 495221 567019 ~ 567342 (-)
G171719 NA non-coding upstream 498503 570301 ~ 570904 (-)
prrc1 prrc1 other upstream 922639 994437 ~ 1008188 (-)
megf10 megf10 other upstream 969000 1040798 ~ 1146587 (-)
G171868 NA other upstream 1098405 1170203 ~ 1170789 (-)
G172032 NA other upstream 1524718 1596516 ~ 1602156 (-)
G172311 NA other upstream 2913024 2984822 ~ 2985260 (-)

Expression


Co-expression Network