LOC120545599 (fbxw2)


Basic Information

Item Value
gene id LOC120545599
gene name fbxw2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 672472 ~ 745412 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU232770
cagGTTAGGGGACTGCCAAGTCGCCCTCTCTGCCTGCTCAACTGCTGTGCTGGCTCGATggggttttaagcccccaactaAGCCTTCAAGGCAGCGTTGCGACCGTCGTCttcaaccataaccattgcctaatcctagtgtgACGTTGGGGGCTTTAACAGCAAACTCCGTGTGCTGAGCGTCTGCCCTCAGGATTGTCGACCAGGCAGCAGGTGAGCAGGGTCTCGGGGTCCAGCCAGTGCAGCAGGTAGAAGGCCAGCTCCAGGGGGAGGAGGCGAAGGAAGTCCCTCTTCAGCAGCGTCTCCAGCCCGTTGGACAGGTGGCGGAGCTGCACGGCTCCGCTCAGAGAGATCAGCTGGTCCAGAGACTGGTTGCGCTGCTGGTCGTTCAGGGTAAGGAAAGAGGCCGAGACGGACTGCAGCCAGCCCTCGAAGGCTGCCGTCTCCATGGCAACATGAGAGCCAGCTGCAACACCGACAGGAACGCCGCCCGGCCGCACGTCAGCTCA
>TU232771
CTTCAGTAAAGAGTCAAATCCTGGTGTGTAGAGATCCTCAAGCCAGAAGTCCAGATCTCTAGgactcttctcttcctcctgcaaaggaaaaggaaaaccGGCTGAACTCTGAGACATCAGCAGGTATCTGTCATCAAACTCCACACGAGTGCCCTCTGGGGACGGAGGAGACCAGCTTTCAGTCTTCACCCTTTGCTCCCTCTGTGGAGACAACGAGGCAGCGATTTGAATTCTCATCACACCTACCTTCAACTCTTTGCCCAGACAAAGAGAAGACACTGGAGACACTGGACACACAGACCAGGCAGCAGGTGAGCAGGGTCTCGGGGTCCAGCCAGTGCAGCAGGTAGAAGGCCAGCTCCAGGGGGAGGAGGCGAAGGAAGTCCCTCTTCAGCAGCGTCTCCAGCCCGTTGGACAGGTGGCGGAGCTGCACGGCTCCGCTCAGAGAGATCAGCTGGTCCAGAGACTGGTTGCGCTGCTGGTCGTTCAGGGTAAGGAAAGAGGCCGAGACGGACTGCAGCCAGCCCTCGAAGGCTGCCGTCTCCATGGCAACATGAGAGCCAGCTGCAACACCGACAGGAACGCCGCCCGGCCGCACGTCAGCTCA
>XR_005636714.1
TCAGTAAAGAGTCAAATCCTGGTGTGTAGAGATCCTCAAGCCAGAAGTCCAGATCTCTAGgactcttctcttcctcctgcaaaggaaaaggaaaaccGGCTGAACTCTGAGACATCAGCAGGTATCTGTCATCAAACTCCACACGAGTGCCCTCTGGGGACGGAGGAGACCAGCTTTCAGTCTTCACCCTTTGCTCCCTCTGTGGAGACAACGAGGCAGCGATTTGAATTCTCATCACACCTACCTTCAACTCTTTGCCCAGACAAAGAGAAGACACTGGAGACACTGGACACACAGACCAGGCAGCAGGTGAGCAGGGTCTCGGGGTCCAGCCAGTGCAGCAGGTAGAAGGCCAGCTCCAGG
>XR_005636715.1
TCAGTAAAGAGTCAAATCCTGGTGTGTAGAGATCCTCAAGCCAGAAGTCCAGATCTCTAGgactcttctcttcctcctgcaaaggaaaaggaaaaccGGCTGAACTCTGAGACATCAGCAGGTATCTGTCATCAAACTCCACACGAGTGCCCTCTGGGGACGGAGGAGACCAGCTTTCAGTCTTCACCCTTTGCTCCCTCTGTGGAGACAACGAGGCAGCGATTTGAATTCTCATCACACCTACCTTCAACTCTTTGCCCAGACAAAGAGAAGACACTGGAGACACTGGACACACAGGAGGATGATGGTTAAAAGTCAACAAGAACACGAGGCAAAGCGTTCCAGGAAGAAATCATACACATTTTCTGACCAGGCAGCAGGTGAGCAGGGTCTCGGGGTCCAGCCAGTGCAGCAGGTAGAAGGCC

Function

symbol description
fbxw2 Orthologous to human FBXW2 (F-box and WD repeat domain containing 2).

NR:

description
PREDICTED: F-box/WD repeat-containing protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232770 False 508 lncRNA 0.61 2 672472 684728
TU232771 True 607 lncRNA 0.57 3 672472 745412
XR_005636714.1 False 363 lncRNA 0.53 3 672714 745410
XR_005636715.1 False 425 lncRNA 0.51 4 672723 745410

Neighbor

gene id symbol gene type direction distance location
crb2a NA coding downstream 12752 624960 ~ 659720 (-)
LOC120545215 NA coding downstream 50735 595893 ~ 621737 (-)
nek6 LOC102297357,LOC102792581,LOC100704402,LOC104936759,LOC101471322 coding downstream 107690 533379 ~ 564782 (-)
LOC120545827 NA coding downstream 213196 458084 ~ 459276 (-)
mapkap1 mapkap1,LOC102781088 coding downstream 330095 302496 ~ 342377 (-)
slc12a2 NA coding upstream 7000 752412 ~ 846977 (-)
slc27a6 slc27a6 coding upstream 138457 883869 ~ 951206 (-)
lmnb1 lmnb1 coding upstream 221587 966999 ~ 987881 (-)
LOC120545116 LOC103364476 coding upstream 266732 1012144 ~ 1033929 (-)
LOC120544936 LOC107748254 coding upstream 429116 1174528 ~ 1183903 (-)
G171728 NA non-coding downstream 72424 599546 ~ 600048 (-)
G171719 NA non-coding downstream 101568 570301 ~ 570904 (-)
G171718 NA non-coding downstream 105130 567019 ~ 567342 (-)
G171680 NA non-coding downstream 153402 518840 ~ 519070 (-)
G171674 NA non-coding downstream 192321 479794 ~ 480151 (-)
G171792 NA non-coding upstream 135166 880578 ~ 880789 (-)
G171793 NA non-coding upstream 140040 885452 ~ 885653 (-)
G171794 NA non-coding upstream 144509 889921 ~ 890164 (-)
G171795 NA non-coding upstream 145748 891160 ~ 891377 (-)
G171839 NA non-coding upstream 263419 1008831 ~ 1009427 (-)
prrc1 prrc1 other upstream 249025 994437 ~ 1008188 (-)
megf10 megf10 other upstream 295386 1040798 ~ 1146587 (-)
G171868 NA other upstream 424791 1170203 ~ 1170789 (-)
G172032 NA other upstream 851104 1596516 ~ 1602156 (-)
G172311 NA other upstream 2239410 2984822 ~ 2985260 (-)

Expression


Co-expression Network