G171793



Basic Information


Item Value
gene id G171793
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 885452 ~ 885653 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>TU232833
cttacacatgttttcaaaactctacacacaattcccaaaactgcacacacaaaatgctaaatgcctcacatctccttcaaaatcaAACACTgaattcaaaataccataaacacatctcaaaatgggTTAGTCatctgctgagaggggttgaaaagtgtaatgtaatgttacagtaaaacagaaaatatttgtaAGTTTGTAA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU232833 True 202 lncRNA 0.33 1 885452 885653

Neighbor


gene id symbol gene type direction distance location
slc12a2 NA coding downstream 38475 752412 ~ 846977 (-)
crb2a NA coding downstream 225732 624960 ~ 659720 (-)
LOC120545215 NA coding downstream 263715 595893 ~ 621737 (-)
nek6 LOC102297357,LOC102792581,LOC100704402,LOC104936759,LOC101471322 coding downstream 320670 533379 ~ 564782 (-)
LOC120545827 NA coding downstream 426176 458084 ~ 459276 (-)
lmnb1 lmnb1 coding upstream 81346 966999 ~ 987881 (-)
LOC120545116 LOC103364476 coding upstream 126491 1012144 ~ 1033929 (-)
LOC120544936 LOC107748254 coding upstream 288875 1174528 ~ 1183903 (-)
syk syk coding upstream 507111 1392764 ~ 1423159 (-)
reep5 reep5,LOC105917055,LOC107098485,LOC103152299 coding upstream 620901 1506554 ~ 1522474 (-)
G171792 NA non-coding downstream 4663 880578 ~ 880789 (-)
LOC120545599 fbxw2 non-coding downstream 140040 672472 ~ 745412 (-)
G171728 NA non-coding downstream 285404 599546 ~ 600048 (-)
G171719 NA non-coding downstream 314548 570301 ~ 570904 (-)
G171718 NA non-coding downstream 318110 567019 ~ 567342 (-)
G171794 NA non-coding upstream 4268 889921 ~ 890164 (-)
G171795 NA non-coding upstream 5507 891160 ~ 891377 (-)
G171839 NA non-coding upstream 123178 1008831 ~ 1009427 (-)
G171846 NA non-coding upstream 151178 1036831 ~ 1037526 (-)
G171848 NA non-coding upstream 152686 1038339 ~ 1038810 (-)
prrc1 prrc1 other upstream 108784 994437 ~ 1008188 (-)
megf10 megf10 other upstream 155145 1040798 ~ 1146587 (-)
G171868 NA other upstream 284550 1170203 ~ 1170789 (-)
G172032 NA other upstream 710863 1596516 ~ 1602156 (-)
G172311 NA other upstream 2099169 2984822 ~ 2985260 (-)

Expression



Co-expression Network